mRNA_L-digitata_M_contig100441.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100441.1.1
Unique NamemRNA_L-digitata_M_contig100441.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: A0A6H5JX12_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX12_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.250e-55
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:   16 QIEGVTFGYDAANPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            QIEGVTFGYDA NPLFSNVHFGVDLDSR+GIVGPNGAGKSTLLNLILDKLRPL GEVRRN NLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ
Sbjct:  286 QIEGVTFGYDARNPLFSNVHFGVDLDSRVGIVGPNGAGKSTLLNLILDKLRPLSGEVRRNPNLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 381
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: D8LTY8_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY8_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.830e-54
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:   16 QIEGVTFGYDAANPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            QIEGVTFGYDA NPLFSNVHFGVDLDSR+GIVGPNGAGKSTLLNLILDKLRPL GEVRRN NLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ
Sbjct:  479 QIEGVTFGYDAGNPLFSNVHFGVDLDSRVGIVGPNGAGKSTLLNLILDKLRPLSGEVRRNPNLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 574
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: A0A836CKX3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.660e-36
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:   19 IEGVTFGYDAANPL-FSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            +EGV+FGYDA + L F NVHFGVD++SRI IVGPNGAGKSTLLN+++DKL+P+ G V RN  L+IA FTQH AEQFDYRLN+VDNM++++P V EQ
Sbjct:  519 VEGVSFGYDAVHGLLFQNVHFGVDMESRIAIVGPNGAGKSTLLNVMMDKLKPVSGYVHRNPQLKIAAFTQHHAEQFDYRLNAVDNMLRMWPKVPEQ 614
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: A0A7S2XYX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYX4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.050e-32
Identity = 61/99 (61.62%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:   16 QIEGVTFGY----DAANPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQE 300
            Q+E +TFGY    D  + LF NV+FG+DL SRIGIVGPNG+GKSTLLNLILDKL P+ G V ++ NLRIA FTQH AEQFDYR++++ N+++++P  QE
Sbjct:  140 QVEDITFGYGGEGDPDSFLFRNVNFGIDLKSRIGIVGPNGSGKSTLLNLILDKLEPVHGLVHQHNNLRIAAFTQHHAEQFDYRMSALLNLMRIYPKEQE 238
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: A0A7S3XXA7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXA7_HETAK)

HSP 1 Score: 120 bits (302), Expect = 7.120e-31
Identity = 58/97 (59.79%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:   16 QIEGVTFGYDAANP-LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            Q+EG+TFGY   +  LF +VHF +DL SRIGI+G NG+GKSTLLNLILD+L P  G V R+ NLR+A FTQH AEQF+YRL ++ N++ +FP   EQ
Sbjct:  138 QVEGITFGYGGEDSILFRDVHFSIDLKSRIGILGANGSGKSTLLNLILDQLHPKAGFVHRHGNLRVAAFTQHHAEQFNYRLTALQNLLNIFPSENEQ 234
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: A0A7S3Q841_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q841_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.130e-27
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:   19 IEGVTFGYDA----ANPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            I+ V+F Y      A  +   V+FGVDLDSRIGI+G NGAGKSTLLNLI DKL+PL G V RN  LRI  FTQH+A++FD RL+SV+NM+ LFP   +Q
Sbjct:  575 IDDVSFDYHKSKKEAEYILQKVNFGVDLDSRIGILGANGAGKSTLLNLITDKLQPLSGSVSRNGRLRIGMFTQHSADKFDLRLSSVENMLALFPDATDQ 673
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: A0A7S2IBD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBD8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 8.670e-26
Identity = 50/82 (60.98%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:   58 LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            L  +V+FG+DLDSRIGI+G NGAGKSTLLNLI+DKL+P RG + RN  LR+ HFTQH+A++FD +L++V+NM+  F G  +Q
Sbjct:  583 LLRDVNFGIDLDSRIGILGANGAGKSTLLNLIMDKLQPTRGSISRNGRLRVGHFTQHSADKFDLQLSAVENMMATFEGRGDQ 664
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: A0A7S1YRA7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRA7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.150e-25
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:   58 LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            L  +V+FG+DLDSRIGI+G NGAGKSTLLNLI+DKL P  G + RN  LRI HFTQH+A++FD +L++V+NM+  F G  +Q
Sbjct:  166 LLQDVNFGIDLDSRIGILGANGAGKSTLLNLIMDKLEPTSGSISRNGRLRIGHFTQHSADKFDLQLSAVENMMASFEGRGDQ 247
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BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: A0A7S4RCN1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RCN1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.210e-25
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:   58 LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            L  +V+FG+DLDSRIGI+G NGAGKSTLLNLI+DKL P  G + RN  LRI HFTQH+A++FD +L++V+NM+  F G  +Q
Sbjct:  573 LLQDVNFGIDLDSRIGILGANGAGKSTLLNLIMDKLEPTSGSISRNGRLRIGHFTQHSADKFDLQLSAVENMMATFEGRGDQ 654
[Close]
BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Match: W7U344_9STRA (Abc transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U344_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.740e-25
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   58 LFSNVHFGVDLDSRIGIVGPNGAGKSTLLNLILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQEQ 303
            LF NV FGVDL++RIG+VG NGAGKSTLLNLILDKLRP  G + R+ NLR+A FTQH  +QFD RL++V+N   +FP    Q
Sbjct:  572 LFENVDFGVDLETRIGVVGANGAGKSTLLNLILDKLRPTEGHIFRHHNLRLASFTQHHGDQFDLRLSAVENFESMFPKSDTQ 653
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100441.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX12_9PHAE1.250e-5595.83ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LTY8_ECTSI1.830e-5495.83ABC transporter domain-containing protein n=1 Tax=... [more]
A0A836CKX3_9STRA5.660e-3668.75P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2XYX4_9STRA2.050e-3261.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XXA7_HETAK7.120e-3159.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Q841_9STRA2.130e-2759.60Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S2IBD8_9STRA8.670e-2660.98Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S1YRA7_9STRA1.150e-2560.98Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S4RCN1_9STRA4.210e-2560.98Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
W7U344_9STRA5.740e-2563.41Abc transporter n=2 Tax=Monodopsidaceae TaxID=4250... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100441contigL-digitata_M_contig100441:161..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTY8
PFAMsABC_tran,ABC_tran_Xtn
Model size306
Max annot lvl2759|Eukaryota
KEGG koko:K06158
Hectar predicted targeting categoryother localisation
Exons1
Evalue3e-55
EggNOG OGsCOG0488@1|root,KOG0062@2759|Eukaryota
DescriptionATPase activity
Cds size306
COG categoryJ
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.3053744-CDS-L-digitata_M_contig100441:160..4661682406607.3053744-CDS-L-digitata_M_contig100441:160..466Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100441 161..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100441.1.1prot_L-digitata_M_contig100441.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100441 161..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100441.1.1

>prot_L-digitata_M_contig100441.1.1 ID=prot_L-digitata_M_contig100441.1.1|Name=mRNA_L-digitata_M_contig100441.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=102bp
QKCRFQIEGVTFGYDAANPLFSNVHFGVDLDSRIGIVGPNGAGKSTLLNL
ILDKLRPLRGEVRRNANLRIAHFTQHAAEQFDYRLNSVDNMIKLFPGVQE
QV
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mRNA from alignment at L-digitata_M_contig100441:161..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100441.1.1 ID=mRNA_L-digitata_M_contig100441.1.1|Name=mRNA_L-digitata_M_contig100441.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig100441:161..466- (Laminaria digitata LdigPH10_18mv male)
CAAAAATGTCGGTTTCAGATCGAGGGCGTGACCTTCGGCTACGACGCGGC
CAACCCGCTCTTCTCGAACGTTCACTTTGGCGTCGACCTGGACTCGCGAA
TCGGGATCGTCGGACCCAACGGCGCGGGCAAGTCCACACTGCTGAACCTG
ATCCTGGACAAGCTGAGGCCGCTGAGGGGGGAGGTGCGGCGCAATGCGAA
TTTGAGGATCGCTCACTTCACGCAGCACGCGGCGGAGCAGTTCGACTACA
GACTGAACAGCGTGGATAATATGATCAAACTCTTTCCGGGCGTGCAGGAG
CAGGTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100441:161..466-

>mRNA_L-digitata_M_contig100441.1.1 ID=mRNA_L-digitata_M_contig100441.1.1|Name=mRNA_L-digitata_M_contig100441.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=306bp|location=Sequence derived from alignment at L-digitata_M_contig100441:161..466- (Laminaria digitata LdigPH10_18mv male)
CAAAAATGTCGGTTTCAGATCGAGGGCGTGACCTTCGGCTACGACGCGGC
CAACCCGCTCTTCTCGAACGTTCACTTTGGCGTCGACCTGGACTCGCGAA
TCGGGATCGTCGGACCCAACGGCGCGGGCAAGTCCACACTGCTGAACCTG
ATCCTGGACAAGCTGAGGCCGCTGAGGGGGGAGGTGCGGCGCAATGCGAA
TTTGAGGATCGCTCACTTCACGCAGCACGCGGCGGAGCAGTTCGACTACA
GACTGAACAGCGTGGATAATATGATCAAACTCTTTCCGGGCGTGCAGGAG
CAGGTG
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