mRNA_L-digitata_M_contig100438.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100438.1.1
Unique NamemRNA_L-digitata_M_contig100438.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: A0A2D7FMF4_9PROT (3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D7FMF4_9PROT)

HSP 1 Score: 258 bits (659), Expect = 2.980e-84
Identity = 128/134 (95.52%), Postives = 133/134 (99.25%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            GQ+HDLLYVDGGPSSTQSVG+LRMEGPEVFKHAVRNLASVCSEALDAAGLAA+DIDWLVPHQANQRIISTTARKLKMSE+KIVMTVDHHANTSAASIPLALTEAVRDGRV+ GDVVVLEAMGGGFTWGASVIRW
Sbjct:  191 GQYHDLLYVDGGPSSTQSVGYLRMEGPEVFKHAVRNLASVCSEALDAAGLAADDIDWLVPHQANQRIISTTARKLKMSEKKIVMTVDHHANTSAASIPLALTEAVRDGRVSVGDVVVLEAMGGGFTWGASVIRW 324
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BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: A0A2D8PPR5_9PROT (3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PPR5_9PROT)

HSP 1 Score: 230 bits (586), Expect = 3.420e-73
Identity = 110/134 (82.09%), Postives = 124/134 (92.54%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G+HHDLLYVDGGPSSTQ+VG+LRMEGPEVFKHAV+NL+SV  EALD AGL   D+DWLVPHQANQRIIS+TARKLK+SE KIV+TVD HANTSAASIPLAL EAV+DGR++ G+VVVLEAMGGGFTWGASV+RW
Sbjct:  191 GRHHDLLYVDGGPSSTQTVGYLRMEGPEVFKHAVKNLSSVIGEALDLAGLEPGDVDWLVPHQANQRIISSTARKLKVSENKIVVTVDRHANTSAASIPLALNEAVKDGRISSGEVVVLEAMGGGFTWGASVVRW 324
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BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: A0A520NNV9_9PROT (3-oxoacyl-[acyl-carrier-protein] synthase 3 n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NNV9_9PROT)

HSP 1 Score: 222 bits (565), Expect = 5.150e-70
Identity = 105/134 (78.36%), Postives = 123/134 (91.79%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G++HDLLYVDGGPS+TQ+VG LRMEGPEVFKHAV+NL+SV  EAL+ AGL  +D+DWLVPHQAN+RIIS+TARKL++ EEKIVMTV+ HANTSAASIPLAL +AVRDGR+  GDV+VLEAMGGGFTWGASV+RW
Sbjct:  191 GRYHDLLYVDGGPSATQTVGHLRMEGPEVFKHAVKNLSSVIGEALEIAGLHTDDVDWLVPHQANKRIISSTARKLRVGEEKIVMTVERHANTSAASIPLALNDAVRDGRINTGDVLVLEAMGGGFTWGASVVRW 324
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BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: A0A2S6Q7A2_9PROT (3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q7A2_9PROT)

HSP 1 Score: 216 bits (549), Expect = 1.350e-67
Identity = 103/134 (76.87%), Postives = 121/134 (90.30%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G+H+ LLYVDGG S+TQ+VG LRM+GPEVFKHAV+NL+SV  E L+ AGL ++D+DWLVPHQANQRII++TARKL++ E+KIVMTVD HANTSAASIPLAL  AV+DGR+T GDVVVLEAMGGGFTWGASVIRW
Sbjct:  191 GRHYGLLYVDGGASTTQTVGHLRMDGPEVFKHAVKNLSSVIGEVLELAGLQSKDVDWLVPHQANQRIITSTARKLRVDEKKIVMTVDRHANTSAASIPLALNTAVQDGRITAGDVVVLEAMGGGFTWGASVIRW 324
[Close]
BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: UPI000B11B524 (ketoacyl-ACP synthase III n=1 Tax=Sneathiella glossodoripedis TaxID=418853 RepID=UPI000B11B524)

HSP 1 Score: 207 bits (527), Expect = 2.860e-65
Identity = 98/134 (73.13%), Postives = 117/134 (87.31%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G+HHDLLYVDGGPSS+Q+ G+LRMEG EVFKHAV NLA+V  EALDA GL A+DIDWL+PHQAN+RII  T RKLKM   K+V+TVD H NTSAAS+PLAL EAVRDGRVT GD+++LEAMGGGFTWG++++R+
Sbjct:  114 GRHHDLLYVDGGPSSSQTTGYLRMEGREVFKHAVTNLANVVGEALDATGLNADDIDWLIPHQANKRIIDGTGRKLKMDPAKVVVTVDKHGNTSAASVPLALDEAVRDGRVTKGDLLLLEAMGGGFTWGSALVRF 247
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BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: UPI0015E16E2E (ketoacyl-ACP synthase III n=1 Tax=Sneathiella aquimaris TaxID=2599305 RepID=UPI0015E16E2E)

HSP 1 Score: 208 bits (530), Expect = 9.760e-65
Identity = 97/134 (72.39%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G HHDLL+VDGGPSSTQS G+LRM G EVFKHAV NLASV  EAL+A GL  +DIDWL+PHQAN+RII  T RKLKM  EK+V+TVD H NTSAAS+PLAL EAVRDGR+  GD+++LEAMGGGFTWG++++RW
Sbjct:  190 GNHHDLLFVDGGPSSTQSTGYLRMAGREVFKHAVNNLASVVGEALEATGLETDDIDWLIPHQANKRIIDGTGRKLKMPSEKVVVTVDRHGNTSAASVPLALDEAVRDGRIKKGDLLLLEAMGGGFTWGSALVRW 323
[Close]
BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: UPI001AEC4FFF (ketoacyl-ACP synthase III n=1 Tax=Niveispirillum irakense TaxID=34011 RepID=UPI001AEC4FFF)

HSP 1 Score: 205 bits (521), Expect = 2.170e-63
Identity = 98/134 (73.13%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G+HHDLLYVDGGPSSTQ+VG LRM G EVFKHAV NL  V  EAL A GL A+DIDWLVPHQAN+RII  T RKLK+S EK+V+TVDHH NTSAASIPLAL EAV DGR+  GD+++LEAMGGGFTWG +++R+
Sbjct:  189 GEHHDLLYVDGGPSSTQTVGHLRMRGQEVFKHAVVNLTEVVREALQANGLEAQDIDWLVPHQANRRIIEGTGRKLKLSPEKVVLTVDHHGNTSAASIPLALAEAVHDGRIKRGDLMLLEAMGGGFTWGGALVRY 322
[Close]
BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: FABH_RHOCS (3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=FABH_RHOCS)

HSP 1 Score: 204 bits (520), Expect = 3.160e-63
Identity = 98/134 (73.13%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G+HHDLLYVDGGPS+TQ+VG LRM+G EVFKHAV NLA V  EAL A GL+  DI WLVPHQAN+RII +TARKLK+   ++V+TVDHH NTSAASIPLAL EAV DGRV  GD+V+LEAMGGGFTWGA+++RW
Sbjct:  190 GRHHDLLYVDGGPSTTQTVGHLRMKGQEVFKHAVVNLAHVVEEALAANGLSPADISWLVPHQANRRIIESTARKLKLDGSRVVLTVDHHGNTSAASIPLALCEAVHDGRVQRGDIVLLEAMGGGFTWGAALVRW 323
[Close]
BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: A0A858R5V6_9PROT (3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Rhodospirillaceae bacterium B3 TaxID=2728875 RepID=A0A858R5V6_9PROT)

HSP 1 Score: 204 bits (518), Expect = 6.510e-63
Identity = 98/134 (73.13%), Postives = 112/134 (83.58%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G+HHDLLYVDGGPSSTQ+VG LRM G EVFKHAV NLA V  EAL A GL A  IDWL+PHQAN+RII  T RKL++  EK+V+TVDHH NTSAASIPLAL EAV DGR+  GDV++LEAMGGGFTWGA+++RW
Sbjct:  191 GRHHDLLYVDGGPSSTQTVGHLRMRGQEVFKHAVVNLAEVVHEALSANGLEASAIDWLIPHQANRRIIEGTGRKLRLPPEKVVLTVDHHGNTSAASIPLALCEAVLDGRIKRGDVLLLEAMGGGFTWGAALVRW 324
[Close]
BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Match: A0A2E2QFG9_9PROT (3-oxoacyl-[acyl-carrier-protein] synthase 3 n=5 Tax=Sneathiella TaxID=510690 RepID=A0A2E2QFG9_9PROT)

HSP 1 Score: 203 bits (517), Expect = 8.960e-63
Identity = 94/134 (70.15%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:    1 GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGLAAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLALTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW 402
            G  HDLLYVDGGPSSTQ+ G+LRMEG EVF+HAV NLASV  EA++A GL   DIDWL+PHQAN+RII  T RKLK+  EK+V+TVD H NTSAAS+PLAL EAVRDGR+  GD+++LEAMGGGFTWG++++RW
Sbjct:  190 GDKHDLLYVDGGPSSTQTTGYLRMEGREVFRHAVNNLASVVHEAMEATGLETSDIDWLIPHQANKRIIDGTGRKLKLDPEKVVLTVDKHGNTSAASVPLALDEAVRDGRIKRGDLLLLEAMGGGFTWGSALVRW 323
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100438.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FMF4_9PROT2.980e-8495.523-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Ta... [more]
A0A2D8PPR5_9PROT3.420e-7382.093-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Ta... [more]
A0A520NNV9_9PROT5.150e-7078.363-oxoacyl-[acyl-carrier-protein] synthase 3 n=2 Ta... [more]
A0A2S6Q7A2_9PROT1.350e-6776.873-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Ta... [more]
UPI000B11B5242.860e-6573.13ketoacyl-ACP synthase III n=1 Tax=Sneathiella glos... [more]
UPI0015E16E2E9.760e-6572.39ketoacyl-ACP synthase III n=1 Tax=Sneathiella aqui... [more]
UPI001AEC4FFF2.170e-6373.13ketoacyl-ACP synthase III n=1 Tax=Niveispirillum i... [more]
FABH_RHOCS3.160e-6373.133-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Ta... [more]
A0A858R5V6_9PROT6.510e-6373.133-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Ta... [more]
A0A2E2QFG9_9PROT8.960e-6370.153-oxoacyl-[acyl-carrier-protein] synthase 3 n=5 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100438contigL-digitata_M_contig100438:1..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog414684.RC1_1327
Preferred namefabH
PFAMsACP_syn_III,ACP_syn_III_C
Model size405
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00004,RC02729,RC02888
KEGG koko:K00648
KEGG ReactionR10707
KEGG Pathwayko00061,ko01100,ko01212,map00061,map01100,map01212
KEGG ModuleM00082,M00083
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.18e-64
EggNOG OGsCOG0332@1|root,COG0332@2|Bacteria,1MU9N@1224|Proteobacteria,2TR60@28211|Alphaproteobacteria,2JQQP@204441|Rhodospirillales
EC2.3.1.180
DescriptionCatalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Cds size405
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406607.24473-CDS-L-digitata_M_contig100438:0..4051682406607.24473-CDS-L-digitata_M_contig100438:0..405Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100438 1..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100438.1.1prot_L-digitata_M_contig100438.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100438 1..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100438.1.1

>prot_L-digitata_M_contig100438.1.1 ID=prot_L-digitata_M_contig100438.1.1|Name=mRNA_L-digitata_M_contig100438.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=135bp
GQHHDLLYVDGGPSSTQSVGFLRMEGPEVFKHAVRNLASVCSEALDAAGL
AAEDIDWLVPHQANQRIISTTARKLKMSEEKIVMTVDHHANTSAASIPLA
LTEAVRDGRVTGGDVVVLEAMGGGFTWGASVIRW*
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mRNA from alignment at L-digitata_M_contig100438:1..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100438.1.1 ID=mRNA_L-digitata_M_contig100438.1.1|Name=mRNA_L-digitata_M_contig100438.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=405bp|location=Sequence derived from alignment at L-digitata_M_contig100438:1..405+ (Laminaria digitata LdigPH10_18mv male)
GGACAGCACCATGATCTCCTGTATGTAGACGGCGGGCCCTCATCGACGCA
GTCGGTGGGTTTTCTCCGTATGGAAGGCCCCGAAGTCTTCAAACACGCTG
TCAGGAATCTGGCGAGCGTCTGTTCCGAGGCGCTCGACGCCGCGGGCCTG
GCGGCGGAGGATATCGACTGGCTGGTACCGCACCAGGCCAACCAGCGGAT
CATCTCGACCACCGCCCGCAAGCTGAAGATGAGCGAAGAGAAAATTGTCA
TGACGGTCGATCATCACGCCAATACGTCGGCGGCGTCGATACCGCTGGCA
CTCACGGAGGCGGTCCGGGACGGCCGTGTTACCGGCGGCGATGTCGTCGT
TCTGGAAGCAATGGGCGGCGGATTCACATGGGGTGCCAGCGTCATTCGCT
GGTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100438:1..405+

>mRNA_L-digitata_M_contig100438.1.1 ID=mRNA_L-digitata_M_contig100438.1.1|Name=mRNA_L-digitata_M_contig100438.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=405bp|location=Sequence derived from alignment at L-digitata_M_contig100438:1..405+ (Laminaria digitata LdigPH10_18mv male)
GGACAGCACCATGATCTCCTGTATGTAGACGGCGGGCCCTCATCGACGCA
GTCGGTGGGTTTTCTCCGTATGGAAGGCCCCGAAGTCTTCAAACACGCTG
TCAGGAATCTGGCGAGCGTCTGTTCCGAGGCGCTCGACGCCGCGGGCCTG
GCGGCGGAGGATATCGACTGGCTGGTACCGCACCAGGCCAACCAGCGGAT
CATCTCGACCACCGCCCGCAAGCTGAAGATGAGCGAAGAGAAAATTGTCA
TGACGGTCGATCATCACGCCAATACGTCGGCGGCGTCGATACCGCTGGCA
CTCACGGAGGCGGTCCGGGACGGCCGTGTTACCGGCGGCGATGTCGTCGT
TCTGGAAGCAATGGGCGGCGGATTCACATGGGGTGCCAGCGTCATTCGCT
GGTAA
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