mRNA_L-digitata_M_contig100427.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: A0A7V2Q9S5_9CHLR (Histidine kinase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7V2Q9S5_9CHLR) HSP 1 Score: 121 bits (303), Expect = 8.120e-27 Identity = 84/267 (31.46%), Postives = 138/267 (51.69%), Query Frame = 1
Query: 133 SDGDTLWHGITTDITDRQLQQLAVEESKERLRLQMEYAPDAILTFDPGLNCFVDANPQAASMFEMPREQLLQLSWRDLSPRVQPGGSVPSEVGHEWVRRAHAGESVTFQWVFQLRSGSTFSGEVRLNQMPHHGVQLVRVSITDISARLEKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIYDVEPSTPG-SLAILNQRLHPDD---REAVAAGLAKAGDPQNEGRFDGQHRIVWRNGEVRRLSARSQTLFTTVDGA 921
S G+ G DIT+R+ + A+ ES+ER R ++AP+ ++ D F D N +A +F R++LL++ +S VQP G EV E ++ A AG S + ++ SG+ F +V++ ++P LVRVS +DI+ R++ E++LR +EERL A+ ++AG+++ ++ + + D EP S A LHPDD EA+ AGD F + R+ + G+ R L + +T+ T DGA
Sbjct: 870 SAGNVRTVGQLLDITERKQAEEAIRESEERFRTLFDFAPEGVMVIDVDKLAFDDVNERALELFGYTRKELLEIGPLAVSAEVQPDGRSAMEVMGEAIQGAMAGGSPRLEAMYVRSSGAEFPVDVQVVKLPEADRNLVRVSFSDITERVQAEQVLRENEERLDLAMEASNAGVWEFWPQDDKAFFDDRWFAMLDYEPGELAQSYATWRSLLHPDDVEPTEAIVFAAVGAGDD-----FGAEFRMKTKGGDWRWLYSIGKTIERTEDGA 1131
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: A0A0G3BCW8_9BURK (Histidine kinase n=2 Tax=Schlegelella brevitalea TaxID=413882 RepID=A0A0G3BCW8_9BURK) HSP 1 Score: 111 bits (278), Expect = 1.490e-23 Identity = 91/278 (32.73%), Postives = 132/278 (47.48%), Query Frame = 1
Query: 142 DTLWHGITTDITDRQLQQLAVEESKERLRLQMEYAPDAILTFDPGLNCFVDA-------NPQAASMFEMPREQLLQLSWRDLSPRVQPGGSVPSEVGHEWVRRAHAGESVTFQW-VFQLRSGSTFSGEVRLNQMPH----HGVQLVRVSITDISARLEKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIYDVEPSTPGSLAILNQRLHPDDREAVAAGLAKAGDPQNEGRFDGQHRIVWRNGEVRRLSARSQTLFTTVDGARVPSRT 939
D L H T + + Q Q ++RL L E P I+ P L +VDA N F PR + RD++ G + ++ A AG++V+ + + R+G + V + +PH V V + + DI+A E LR +EERL QA+R G+FDHDH+ G ++WSP + I+D P P L + R+HPDDREA A L A DP G F +R++ +G+ R +SAR+QT F AR RT
Sbjct: 342 DELEHRAATAVAEAQEAQEQAARLQQRL-LAEELLP-LIIDNLPVLISYVDAEGVYRLNNRAYERWFGEPRSNITGRHVRDVA------GEAAWQTLRPYMEAALAGQAVSCEHQIAYPRAGKRW---VAITYVPHLTAAGSVLGVAILVHDITAHREALDELRRAEERLTQAVRAAGVGVFDHDHVSGELHWSPVIRAIHDWPPDRPPQLDSVLARVHPDDREAHLAALRSAHDPNGNGVFASDYRVLRADGKTRWISARAQTFFKGEGAARRAIRT 608
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: UPI001669E069 (PAS domain S-box protein n=1 Tax=Hymenobacter glacieicola TaxID=1562124 RepID=UPI001669E069) HSP 1 Score: 110 bits (274), Expect = 4.500e-23 Identity = 75/251 (29.88%), Postives = 121/251 (48.21%), Query Frame = 1
Query: 139 GDTLWHGITTDITDRQLQQLAVEESKERLRLQMEYAPDAILTFDPGLNCFVDANPQAASMFEM-PREQLLQLSWRDLSPRVQPGGSVPSEVGHEWVRRAHAGESVTFQWVFQLRSGSTFSGEVRLNQMPHHGVQLVRVSITDISARLEKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIY-DVEPSTPGSLAILNQRLHPDDREAVAAGLAKAGDPQNEGRFDGQHRIVWRNGEVRRLSA 885
G+ L DIT+++ + +E S+ R R+ + + D +L N FVD NP + + + QL+ SP QP G + + ++ A F+W +G F +V L +P +V S DI+A E +L+R SEE+L A+ + AG++ +++ + W+ I E +P L L Q +HPDDREAVAA L +A E D +HR++W +G +R +SA
Sbjct: 176 GNQLCRLALIDITEQRQARRELELSERRFRILFDQSQDGMLLMRD--NRFVDCNPATLRLLGLIEKSQLIGQHAAAFSPERQPDGQLSFTLAQQYWEHALRWGHARFEWCRYRSNGEQFWEDVLLTAIPETDGHVVHASWRDITAEKESPRLMRESEEQLQMALTASEAGVWTIEYVTSEITWNERARSICGQPEAPSPAPLQFLQQAIHPDDREAVAAHLHRAA--TEEVPLDLEHRLIWPDGSIRYVSA 422
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: A0A3C1FXM5_9BACT (Uncharacterized protein n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A3C1FXM5_9BACT) HSP 1 Score: 107 bits (268), Expect = 2.580e-22 Identity = 59/129 (45.74%), Postives = 78/129 (60.47%), Query Frame = 1
Query: 553 ITDISARLEKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIYDVEPSTPGSLAILNQRLHPDDREAVAAGLAKAGDPQNEGRFDGQHRIVWRNGEVRRLSARSQTLFTTVDGARVPSRT 939
I DI+ + ++ LR SEERL QAIR + +GIFDHDH+ GT+YWSP IY +L ++P+DRE +AA + A DP +G FD +HRI+ R G +R L+ RSQT F GAR RT
Sbjct: 124 IRDITETKKVDEALRESEERLRQAIRVSQSGIFDHDHLTGTIYWSPLQREIYGWGADETVTLQAFLDCVYPEDRERIAAAVRCAHDPAGDGLFDVEHRIIRRGGAIRWLTTRSQTFFDGEGGARQKVRT 252
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: A0A350M545_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A350M545_9FLAO) HSP 1 Score: 102 bits (253), Expect = 2.160e-21 Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 559 DISARLEKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIYDVEPSTPGSLAILNQRLHPDDREAVAAGLAKAGDPQNEGRFDGQHRIVWRNGEVRRLSARSQTLFTTVDGARVP 930
+I R + E LRTSE+R+ QA+R + GIFDHDHI T++WSPE + Y + +L + +++ PDDRE +A + +A DP +G FD HRI R+G VR ++ RSQT F DG +P
Sbjct: 159 EIIERKKTEDALRTSEDRVQQAVRVANIGIFDHDHISDTIFWSPEQRKHYGLGIDETVTLELFLEQVFPDDREQIANAVRRAHDPAGDGLFDVTHRIFRRDGTVRWITTRSQTFFVG-DGXVLP 281
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: A0A7C5R2Q7_9PLAN (PAS domain S-box protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C5R2Q7_9PLAN) HSP 1 Score: 104 bits (260), Expect = 2.710e-21 Identity = 71/218 (32.57%), Postives = 114/218 (52.29%), Query Frame = 1
Query: 64 DYRVNLPQLGLRWLRSEARPESLSDGDTLW-HGITTDITDRQLQQLAVEESKERLRLQMEYAPDAILTFDPGLNCFVDANPQAASMFEMPREQLLQLSWRDLSPRVQPGGSVPSEVGHEWVRRAHAGESVTFQWVFQLRSGSTFSGEVRLNQMPHHGVQLVRVSITDISARLEKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIYDV 714
D N+ Q R+ P ++G+ + + D+T R+ +LA +ES+E+LR +E AP+AIL +D FV AN AA +F + ++LLQ S LSP QP G E+ +++RA G++V+F+W + G EV L ++P G +L+R S+ DI+ R E+ LR E L++++ D+I +VY+ E R V
Sbjct: 152 DVEENIVQGKKRYFEVRKTPVHNAEGEVIGIQAVFWDVTARRKAELAAKESQEQLRALVESAPEAILIYDVDEQKFVRANKNAARLFHLGLDELLQTSPWQLSPPTQPDGQDSKELAKYYIQRALQGKTVSFEWTHRTAKGRDIPCEVMLTRLPSRGRRLLRASVFDITQRKTAERELRY-ERYLLRSLL---------DNIPDSVYFKDEHSRFLRV 359
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: A0A7C2JTD4_9GAMM (Histidine kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JTD4_9GAMM) HSP 1 Score: 103 bits (256), Expect = 9.690e-21 Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 1
Query: 529 GVQLVRVSITDISARLEKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIYDVEPSTPGSLAILNQRLHPDDREAVAAGLAKAGDPQNEGRFDGQHRIVWRNGEVRRLSARSQTLFTTVDGARVPSRT 939
G +LV V + DI+AR + E+ L E +L A R G+FDHDH YWS +I+D+ P P L +L +L+PDDRE + +A A DP +GRF ++RI R+GEVR + AR+QTLF R P RT
Sbjct: 132 GTRLVGVCL-DITARKQAEERLARREVQLDLATRIVGVGVFDHDHTASCTYWSDHFRKIHDMPPDVPPDLGLLGAQLYPDDREPLQEAVAAAHDPAGDGRFSLEYRIRRRDGEVRWIVARAQTLFVGEGKDRHPVRT 267
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: A0A7J3J9P5_9ARCH (Response regulator n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J3J9P5_9ARCH) HSP 1 Score: 100 bits (249), Expect = 8.360e-20 Identity = 68/212 (32.08%), Postives = 108/212 (50.94%), Query Frame = 1
Query: 16 LQSLQESAHPLSPWQCDYRVNLPQLGLRWLRSEARPESLSDGDTLWHGITTDITDRQLQQLAVEESKERLRLQMEYAPDAILTFDPGLNCFVDANPQAASMFEMPREQLLQLSWRDLSPRVQPGGSVPSEVGHEWVRRAHAGESVTFQWVFQLRSGSTFSGEVRLNQMPH-HGVQLVRVSITDISARLEKEKLLRTSEERLMQAIRCTHAGI 648
++S+++SA L+PWQC+YRV LP G+ W+ ++ PE L+DG +W G TDIT+R+ + A+ +S+ R R E + D I+ P + ANPQA M M E++ + + VQ G + + + R A + F+ + G+TF GEV N +G ++ V I DI+ E LR + E L + AG+
Sbjct: 218 IKSIEDSAQHLTPWQCEYRVRLPD-GIHWMWGQSTPEKLADGRIVWSGFNTDITERKKAEEALAQSEARYRSLYENSFDGIMLSKPD-GTILAANPQACRMLGMTEEEIKKAGRDGIV--VQNGNQALALLESDRTGRVRA------ELTFKRKDGTTFIGEVSSNAFTDINGEKVKSVLIRDITESKNAEDRLRGTFEILEKVSEGIDAGL 419
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: UPI00118516A4 (PAS domain S-box protein n=1 Tax=Ideonella sp. A 288 TaxID=1962181 RepID=UPI00118516A4) HSP 1 Score: 99.0 bits (245), Expect = 3.230e-19 Identity = 88/333 (26.43%), Postives = 151/333 (45.35%), Query Frame = 1
Query: 1 DRGHFLQSLQESAHPLSPWQCD--YRVNLPQLGLRWLRSEARPESLSDGD----TLWHGITTDITDRQLQQLAVEESKERLRLQMEYAPDAILTFDPGLNCFVDANPQAASMFEMPREQ------LLQLSWRDLSPRV--------QPGGSVPSEVGHEWVRRAHAGESVTFQWVFQLRSGSTFSGEVRLNQMPHHGVQLVRVSITDISARLEKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIYDVEPSTPGSLAILNQRLHPDDREAVAAGLAKAGDPQNEGRFDGQHRIVWRNGEVRRLSARSQTLFTTVDGARVPSRT 939
DR +++ + P D +R+ P +RWL + A+ +G G DIT+R+ + A+ S+ RL ++ + I D V +P M +Q ++ ++ + R+ P G + H RR +W+ +R+ + F+GE H V+ V + DI+ R + E+ LR SE RL + ++ ++ GIFDHDH+ G +YWSPE ++ P ++A + + +DR+ AA + +A DP +GR++ + RI R+G +R L + +QTLF R P RT
Sbjct: 968 DREELAAAIRRAHDPAGDGVLDIEHRIRRPDGAVRWLSARAQTFFAGEGADRRAVRTVGGAIDITERREAEEALRRSERRLTQAVQASNTGIFEHDHASGA-VYCSPHHRIMNGWSADQPISVADIVAVTLAEDRDRLGAAIMRSHDPAGDGALDAEHRIRRR-----DGVVRWL-SVRALTYFAGE----GAERHPVRTVG-GVIDITERRKAEEALRLSEGRLTRVVQASNTGIFDHDHVSGEIYWSPEYRAMHGRSADEPITIASVAEATLVEDRDRFAAAIKRAHDPAGDGRYEIEFRIRRRDGTLRCLRSSAQTLFAGEGTERHPVRT 1288
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Match: A0A8J7J2Z7_9DELT (Histidine kinase n=1 Tax=Geomesophilobacter sediminis TaxID=2798584 RepID=A0A8J7J2Z7_9DELT) HSP 1 Score: 98.6 bits (244), Expect = 3.900e-19 Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 577 EKEKLLRTSEERLMQAIRCTHAGIFDHDHIHGTVYWSPELYRIYDVEPSTPGSLAILNQRLHPDDREAVAAGLAKAGDPQNEGRFDGQHRIVWRNGEVRRLSARSQTLFTTVDGARVPSRT 939
+ E +LR SEER QAI ++ G+FDHDH TVYWSP L I +A LHPDDR+A+AA +A+A DP +G +D +HRI+ +G VR L+A+++T F R P RT
Sbjct: 365 QMEAILRLSEERTRQAISASNLGVFDHDHRSDTVYWSPRLREINGWNADQAMGVADFINILHPDDRDAIAASVARAHDPAGDGIWDVEHRIIRGDGAVRWLTAQARTFFEGDGTIRRPVRT 485 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100427.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100427.1.1 >prot_L-digitata_M_contig100427.1.1 ID=prot_L-digitata_M_contig100427.1.1|Name=mRNA_L-digitata_M_contig100427.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=313bp DRGHFLQSLQESAHPLSPWQCDYRVNLPQLGLRWLRSEARPESLSDGDTLback to top mRNA from alignment at L-digitata_M_contig100427:1..939+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100427.1.1 ID=mRNA_L-digitata_M_contig100427.1.1|Name=mRNA_L-digitata_M_contig100427.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=939bp|location=Sequence derived from alignment at L-digitata_M_contig100427:1..939+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100427:1..939+ >mRNA_L-digitata_M_contig100427.1.1 ID=mRNA_L-digitata_M_contig100427.1.1|Name=mRNA_L-digitata_M_contig100427.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=939bp|location=Sequence derived from alignment at L-digitata_M_contig100427:1..939+ (Laminaria digitata LdigPH10_18mv male)back to top |