mRNA_L-digitata_M_contig10040.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10040.1.1
Unique NamemRNA_L-digitata_M_contig10040.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: A0A6H5K685_9PHAE (BRAP2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K685_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.510e-32
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    4 LPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQ 204
            LP+RR  LLC+LSVPAHMVPTD+L F APFKE VHS+RILRPCNPV PSDPA+TPAEYMVLLQMESQ
Sbjct:   83 LPQRRGKLLCLLSVPAHMVPTDMLHFAAPFKEQVHSLRILRPCNPVGPSDPAKTPAEYMVLLQMESQ 149
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: D7FPZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ1_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.430e-29
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    4 LPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQ 204
            LP+RR  LLC+LSVPAHMVPTD+L F APFKE VHS+RILRPCNPV PSDPA+TPAEYMVLLQMESQ
Sbjct:   84 LPQRRGKLLCLLSVPAHMVPTDMLHFAAPFKEQVHSLRILRPCNPVGPSDPAKTPAEYMVLLQMESQ 150
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: A0A835YPP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.850e-13
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 QLPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQ 204
            QLP+ R  LLC+ S+PAHMVPTD+LQ  APF++ +  VRILRPC   R SD  R   EYMV+LQM +Q
Sbjct:  213 QLPEGRGCLLCITSMPAHMVPTDMLQLFAPFRQSMSYVRILRPC---RGSDSERL--EYMVVLQMLNQ 275
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: A0A833TQ33_PHYIN (Zn-finger in ubiquitin-hydrolases and other protein n=34 Tax=Phytophthora TaxID=4783 RepID=A0A833TQ33_PHYIN)

HSP 1 Score: 61.6 bits (148), Expect = 2.150e-9
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 QLPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQVR 210
            QLPK RSTL+CV++VP+HM P ++L+F A F+E +  VRIL+        DP R+    MVL+Q  SQ R
Sbjct:   66 QLPKERSTLVCVVTVPSHMSPVEILEFLASFREDIALVRILK--------DPERS--NCMVLMQFNSQER 125
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: W2PVR5_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PVR5_PHYPN)

HSP 1 Score: 59.7 bits (143), Expect = 9.920e-9
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 QLPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQVR 210
            QLP  RSTL+CV++VP+HM P ++L+F A F+E +  VRIL+        DP R+    MVL+Q  SQ R
Sbjct:   69 QLPNERSTLVCVVTVPSHMSPVEILEFLASFREDIALVRILK--------DPERS--NCMVLMQFNSQER 128
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: H3GNL2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNL2_PHYRM)

HSP 1 Score: 58.2 bits (139), Expect = 3.580e-8
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 QLPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQVR 210
            QLP  RSTL+CV++VP+HM P ++L+F A F++ +  VRIL+        DP R+    MVL+Q  SQ R
Sbjct:   69 QLPTERSTLVCVVTVPSHMSPVEILEFLASFRQDIALVRILK--------DPERS--NCMVLMQFNSQER 128
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: A0A3F2RYB5_9STRA (UBP-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYB5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.970e-8
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    1 QLPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQVR 210
            QLP  RS L+CV++VP+HM P ++L+F A F+E +  VRIL+        DP R+    MVL+Q  SQ R
Sbjct:   74 QLPNERSALVCVVTVPSHMSPVEILEFLASFREDIALVRILK--------DPERS--NCMVLMQFNSQER 133
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: A0A5D6XNV3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNV3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.710e-8
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    4 LPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQVR 210
            LP+ R+TLLC+++VP+HM P +LL+F A F+  V SVR+L+        DP R+    M LLQ  SQ R
Sbjct:  109 LPRERNTLLCIVTVPSHMAPVELLEFLAGFRADVASVRVLQ--------DPDRS--NCMALLQFASQER 167
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BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: K3W6P2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6P2_GLOUD)

HSP 1 Score: 56.2 bits (134), Expect = 1.710e-7
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 QLPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQVR 210
            QLP  R+TLLC+++VP+HM P +LL+F A F++ + SVR+L+        DP R+    M LLQ  +Q R
Sbjct:  113 QLPHERNTLLCIVTVPSHMSPVELLEFLAGFRDDIASVRVLQ--------DPDRS--NCMALLQFVTQDR 172
[Close]
BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Match: A0A3M6VJ33_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJ33_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.370e-7
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    4 LPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPSDPARTPAEYMVLLQMESQVR 210
            LP  RS L+CV++VP+HM P D+L F   F+E +  VRIL+        DP R     MVL+Q +SQ R
Sbjct:   62 LPSERSALVCVVTVPSHMSPVDILDFLTSFREDIALVRILK--------DPERN--NCMVLMQFKSQER 120
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10040.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K685_9PHAE2.510e-3283.58BRAP2 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPZ1_ECTSI1.430e-2983.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPP8_9STRA1.850e-1358.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A833TQ33_PHYIN2.150e-948.57Zn-finger in ubiquitin-hydrolases and other protei... [more]
W2PVR5_PHYPN9.920e-947.14Uncharacterized protein n=8 Tax=Phytophthora paras... [more]
H3GNL2_PHYRM3.580e-845.71Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3F2RYB5_9STRA4.970e-845.71UBP-type domain-containing protein n=3 Tax=Phytoph... [more]
A0A5D6XNV3_9STRA6.710e-846.38Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3W6P2_GLOUD1.710e-744.29Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VJ33_9STRA4.370e-744.93Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10040contigL-digitata_M_contig10040:717..932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPZ1
PFAMsBRAP2,zf-RING_2,zf-UBP
Model size216
Max annot lvl2759|Eukaryota
KEGG koko:K00413,ko:K10632
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categorysignal peptide
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032182,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0042802,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902494,GO:1990234
Exons1
Evalue2.35e-30
EggNOG OGsKOG0804@1|root,KOG0804@2759|Eukaryota
EC2.3.2.27
Descriptionnuclear localization sequence binding
Cds size216
COG categoryGO
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.8331785-CDS-L-digitata_M_contig10040:716..9321682406606.8331785-CDS-L-digitata_M_contig10040:716..932Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10040 717..932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10040.1.1prot_L-digitata_M_contig10040.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10040 717..932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10040.1.1

>prot_L-digitata_M_contig10040.1.1 ID=prot_L-digitata_M_contig10040.1.1|Name=mRNA_L-digitata_M_contig10040.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=72bp
QLPKRRSTLLCVLSVPAHMVPTDLLQFTAPFKEHVHSVRILRPCNPVRPS
DPARTPAEYMVLLQMESQVRE*
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mRNA from alignment at L-digitata_M_contig10040:717..932-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10040.1.1 ID=mRNA_L-digitata_M_contig10040.1.1|Name=mRNA_L-digitata_M_contig10040.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=216bp|location=Sequence derived from alignment at L-digitata_M_contig10040:717..932- (Laminaria digitata LdigPH10_18mv male)
CAACTCCCCAAGCGTCGGAGCACGCTGCTCTGCGTCCTGTCGGTGCCCGC
GCACATGGTCCCGACTGACCTGTTGCAGTTCACGGCCCCGTTCAAGGAGC
ACGTGCACTCTGTCCGCATACTGCGCCCGTGCAACCCGGTGAGGCCCAGC
GATCCCGCGAGGACGCCGGCGGAGTACATGGTGCTGCTGCAGATGGAGAG
CCAGGTGAGGGAGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10040:717..932-

>mRNA_L-digitata_M_contig10040.1.1 ID=mRNA_L-digitata_M_contig10040.1.1|Name=mRNA_L-digitata_M_contig10040.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=216bp|location=Sequence derived from alignment at L-digitata_M_contig10040:717..932- (Laminaria digitata LdigPH10_18mv male)
CAACTCCCCAAGCGTCGGAGCACGCTGCTCTGCGTCCTGTCGGTGCCCGC
GCACATGGTCCCGACTGACCTGTTGCAGTTCACGGCCCCGTTCAAGGAGC
ACGTGCACTCTGTCCGCATACTGCGCCCGTGCAACCCGGTGAGGCCCAGC
GATCCCGCGAGGACGCCGGCGGAGTACATGGTGCTGCTGCAGATGGAGAG
CCAGGTGAGGGAGTGA
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