mRNA_L-digitata_M_contig100375.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100375.1.1
Unique NamemRNA_L-digitata_M_contig100375.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100375.1.1 vs. uniprot
Match: A0A7W1AFW5_9BACT (Transglycosylase SLT domain-containing protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7W1AFW5_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 3.120e-5
Identity = 51/154 (33.12%), Postives = 71/154 (46.10%), Query Frame = 1 
Query:  121 ALLEARVRSIRGQ-VKGTRLLADWIQRRSPGHRYADDALFLHAEVLQRRGDTKGAHAAYERLIRQFPDADFGPTARWRLALAALLAGEKSAVRTHLDQILKDSSARPAERHRAQYWRARLALDAKDEAAAKAGFERLVL-DP-NFYGWLALDRL 573
            A L AR     GQ  +G   L   ++  S     A  ALFL  ++     D   A   + +++ ++P + F PTA +R A+ ALLAGE     T  D I  +   R  E   A YW +R    A D  AA+  + RL   DP ++Y  LA  RL
Sbjct:  134 AYLRARALVRAGQEARGNAALVRVVRLHSRDTTAASSALFLLGDLASDDRDDARARVHFRQVVVRYPTSRFAPTAAFRAAMIALLAGESRLAATEFDAIA-ERFPRSDEAGAATYWSSRAWEVAGDVFAARERWRRLADGDPGSYYTGLAARRL 286
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100375.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W1AFW5_9BACT3.120e-533.12Transglycosylase SLT domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100375contigL-digitata_M_contig100375:26..613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog404589.Anae109_0486
PFAMsSLT,TPR_16,TPR_6,TPR_8
Model size588
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K08309
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.65e-09
EggNOG OGsCOG0457@1|root,COG0741@1|root,COG0457@2|Bacteria,COG0741@2|Bacteria,1MV3F@1224|Proteobacteria,42N7A@68525|delta/epsilon subdivisions,2WPM9@28221|Deltaproteobacteria
Descriptiontransglycosylase
Cds size558
COG categoryM
CAZyGH23
BRITEko00000,ko01000,ko01011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.5542877-UTR-L-digitata_M_contig100375:25..551682406606.5542877-UTR-L-digitata_M_contig100375:25..55Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100375 26..55 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.5631745-CDS-L-digitata_M_contig100375:55..6131682406606.5631745-CDS-L-digitata_M_contig100375:55..613Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100375 56..613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100375.1.1prot_L-digitata_M_contig100375.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100375 56..613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100375.1.1

>prot_L-digitata_M_contig100375.1.1 ID=prot_L-digitata_M_contig100375.1.1|Name=mRNA_L-digitata_M_contig100375.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=186bp
MRRYRPAQRALEAARKRCARLKDTTFTLRVALLEARVRSIRGQVKGTRLL
ADWIQRRSPGHRYADDALFLHAEVLQRRGDTKGAHAAYERLIRQFPDADF
GPTARWRLALAALLAGEKSAVRTHLDQILKDSSARPAERHRAQYWRARLA
LDAKDEAAAKAGFERLVLDPNFYGWLALDRLATQKP
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mRNA from alignment at L-digitata_M_contig100375:26..613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100375.1.1 ID=mRNA_L-digitata_M_contig100375.1.1|Name=mRNA_L-digitata_M_contig100375.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=588bp|location=Sequence derived from alignment at L-digitata_M_contig100375:26..613+ (Laminaria digitata LdigPH10_18mv male)
GGCTACATCCAGGGCAAGGCGCTGAGGAAGATGCGTCGCTATCGGCCCGC
TCAGCGTGCGCTGGAGGCGGCCCGAAAGCGCTGTGCTCGGCTTAAGGATA
CAACCTTCACCCTCCGCGTGGCCCTGCTCGAGGCCCGGGTGCGCAGCATT
CGCGGCCAGGTGAAAGGCACGCGCCTGCTCGCCGACTGGATCCAGCGTCG
CTCGCCGGGTCATCGCTACGCCGACGACGCCCTGTTCCTGCACGCCGAGG
TGCTGCAGCGTCGCGGCGATACCAAGGGCGCGCACGCGGCCTATGAGCGC
CTCATTCGGCAGTTCCCCGACGCCGACTTTGGCCCCACCGCGCGGTGGCG
CCTGGCGCTGGCCGCGCTGTTGGCCGGTGAAAAGTCTGCGGTCCGCACTC
ACCTTGACCAGATCCTCAAGGACTCCAGCGCACGTCCGGCGGAGCGCCAC
CGCGCCCAGTATTGGCGGGCCCGCTTGGCTCTGGATGCCAAGGATGAGGC
CGCCGCGAAGGCGGGATTTGAGCGGCTGGTACTGGACCCTAACTTCTACG
GCTGGCTGGCCTTGGACCGCCTCGCGACCCAAAAGCCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100375:26..613+

>mRNA_L-digitata_M_contig100375.1.1 ID=mRNA_L-digitata_M_contig100375.1.1|Name=mRNA_L-digitata_M_contig100375.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=558bp|location=Sequence derived from alignment at L-digitata_M_contig100375:26..613+ (Laminaria digitata LdigPH10_18mv male)
ATGCGTCGCTATCGGCCCGCTCAGCGTGCGCTGGAGGCGGCCCGAAAGCG
CTGTGCTCGGCTTAAGGATACAACCTTCACCCTCCGCGTGGCCCTGCTCG
AGGCCCGGGTGCGCAGCATTCGCGGCCAGGTGAAAGGCACGCGCCTGCTC
GCCGACTGGATCCAGCGTCGCTCGCCGGGTCATCGCTACGCCGACGACGC
CCTGTTCCTGCACGCCGAGGTGCTGCAGCGTCGCGGCGATACCAAGGGCG
CGCACGCGGCCTATGAGCGCCTCATTCGGCAGTTCCCCGACGCCGACTTT
GGCCCCACCGCGCGGTGGCGCCTGGCGCTGGCCGCGCTGTTGGCCGGTGA
AAAGTCTGCGGTCCGCACTCACCTTGACCAGATCCTCAAGGACTCCAGCG
CACGTCCGGCGGAGCGCCACCGCGCCCAGTATTGGCGGGCCCGCTTGGCT
CTGGATGCCAAGGATGAGGCCGCCGCGAAGGCGGGATTTGAGCGGCTGGT
ACTGGACCCTAACTTCTACGGCTGGCTGGCCTTGGACCGCCTCGCGACCC
AAAAGCCC
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