mRNA_L-digitata_M_contig10036.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10036.1.1
Unique NamemRNA_L-digitata_M_contig10036.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10036.1.1 vs. uniprot
Match: A0A6H5JI85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI85_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.360e-26
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = -2 
Query:    3 LDAGASGQDAFDLILRILCRGLSKALPAAVMQTLQNFMVEQGTPFSVYSGELRLLLANVRCVGPVEPEDGTLQLAIKTSIDDQYAALSAQIFAGRNMSTVPFGNVDELMGA 335
            +DA  SG DA  ++LR +C GLSK   A V+Q LQNF V  GT F  Y  EL++L+ +V+ VG  E  DGTLQ+A+K  + DQ+A L+A +F GRN   +P+ N+D+LM A
Sbjct:  130 MDAETSGPDALTMVLRSVCGGLSKVTSALVLQQLQNFAVPAGTTFKAYLEELKVLVESVQLVGFAE--DGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDNLDDLMAA 238
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BLAST of mRNA_L-digitata_M_contig10036.1.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.310e-25
Identity = 53/111 (47.75%), Postives = 74/111 (66.67%), Query Frame = -2 
Query:    3 LDAGASGQDAFDLILRILCRGLSKALPAAVMQTLQNFMVEQGTPFSVYSGELRLLLANVRCVGPVEPEDGTLQLAIKTSIDDQYAALSAQIFAGRNMSTVPFGNVDELMGA 335
            +D+G SG DA  L+LR +C GLS   PA V+Q LQNF V  GT F  Y  +L++L+ +V+ VG  E  DGTLQ+A+K  + DQYA L+A +F GRN   +P+ +++ LM A
Sbjct:   90 MDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFAE--DGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEA 198
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BLAST of mRNA_L-digitata_M_contig10036.1.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.570e-23
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = -2 
Query:    3 DAGASGQDAFDLILRILCRGLSKALPAAVMQTLQNFMVEQGTPFSVYSGELRLLLANVRCVGPVEPEDGTLQLAIKTSIDDQYAALSAQIFAGRNMSTVPFGNVDELMGA 332
            D+G SG DA  L+LR +C GLS   PA V+Q LQNF V  GT F  Y  +L++L+ +V+ VG  E  DGTLQ+A+K  + DQYA  +A +F GRN   +P+ +++ LM A
Sbjct: 1142 DSGMSGPDALKLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFAE--DGTLQVAVKAGVTDQYATCTAPVFHGRNTQALPYDSLESLMEA 1249
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BLAST of mRNA_L-digitata_M_contig10036.1.1 vs. uniprot
Match: A0A6H5KFF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.170e-22
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = -2 
Query:    3 LDAGASGQDAFDLILRILCRGLSKALPAAVMQTLQNFMVEQGTPFSVYSGELRLLLANVRCVGPVEPEDGTLQLAIKTSIDDQYAALSAQIFAGRNMSTVPFGNVDELMGA 335
            +DA  SG DA  ++LR +C GLS+   A V+Q LQNF V   T F  Y  EL++L+ +V+ VG  E  DGTLQ+A+K  + DQ+A L+A +F GRN   +P+  +D+LM A
Sbjct:  420 MDAKTSGPDALTMVLRSVCGGLSEVTSALVLQQLQNFAVPVDTTFKAYLEELKVLVESVQLVGFAE--DGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMVA 528
[Close]
BLAST of mRNA_L-digitata_M_contig10036.1.1 vs. uniprot
Match: A0A6H5JVS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.090e-20
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = -2 
Query:    3 LILRILCRGLSKALPAAVMQTLQNFMVEQGTPFSVYSGELRLLLANVRCVGPVEPEDGTLQLAIKTSIDDQYAALSAQIFAGRNMSTVPFGNVDELMGA 299
            ++LR +C GLS+   A V+Q LQ F V  GT F  Y  EL++L+ +V+ VG  E  DGTLQ+A+K  + DQ+A L+A +F GRN   +P+  +D+LM A
Sbjct:    1 MVLRSVCGGLSEVTSALVLQQLQKFAVPVGTTFKAYLEELKVLVESVQLVGFAE--DGTLQVAVKAGVTDQFATLTAPVFHGRNTQALPYDKLDDLMAA 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10036.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JI85_9PHAE4.360e-2648.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNG1_9PHAE5.310e-2547.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ9_9PHAE2.570e-2347.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFF1_9PHAE7.170e-2245.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS0_9PHAE3.090e-2045.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10036contigL-digitata_M_contig10036:2955..3291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size338
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.4243064-CDS-L-digitata_M_contig10036:2954..32901682406606.4243064-CDS-L-digitata_M_contig10036:2954..3290Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10036 2955..3290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10036.1.1prot_L-digitata_M_contig10036.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10036 2955..3290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10036.1.1

>prot_L-digitata_M_contig10036.1.1 ID=prot_L-digitata_M_contig10036.1.1|Name=mRNA_L-digitata_M_contig10036.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=112bp
SAPINSSTFPNGTVLMLRPAKICALRAAYWSSILVLMASCKVPSSGSTGP
THLTFANNNLNSPLYTEKGVPCSTMKFCNVCITAAGNALLKPLHNILRIK
SKASCPLAPASN
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mRNA from alignment at L-digitata_M_contig10036:2955..3291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10036.1.1 ID=mRNA_L-digitata_M_contig10036.1.1|Name=mRNA_L-digitata_M_contig10036.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=337bp|location=Sequence derived from alignment at L-digitata_M_contig10036:2955..3291+ (Laminaria digitata LdigPH10_18mv male)
AGTGCTCCCATTAACTCATCTACGTTCCCGAACGGTACCGTGCTCATGTT
GCGCCCAGCAAAGATCTGTGCACTCAGAGCGGCGTATTGGTCGTCAATAC
TAGTCTTGATGGCTAGCTGTAAGGTACCATCTTCTGGCTCTACCGGTCCG
ACACATCTTACATTTGCTAACAACAATCTTAACTCGCCACTGTACACTGA
AAAAGGTGTACCTTGCTCTACCATGAAATTTTGTAATGTTTGCATTACGG
CTGCTGGTAATGCCTTGCTCAAACCCCTACACAATATTCTGAGGATCAAG
TCAAAAGCATCCTGCCCACTGGCTCCAGCATCTAACA
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Coding sequence (CDS) from alignment at L-digitata_M_contig10036:2955..3291+

>mRNA_L-digitata_M_contig10036.1.1 ID=mRNA_L-digitata_M_contig10036.1.1|Name=mRNA_L-digitata_M_contig10036.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=336bp|location=Sequence derived from alignment at L-digitata_M_contig10036:2955..3291+ (Laminaria digitata LdigPH10_18mv male)
AGTGCTCCCATTAACTCATCTACGTTCCCGAACGGTACCGTGCTCATGTT
GCGCCCAGCAAAGATCTGTGCACTCAGAGCGGCGTATTGGTCGTCAATAC
TAGTCTTGATGGCTAGCTGTAAGGTACCATCTTCTGGCTCTACCGGTCCG
ACACATCTTACATTTGCTAACAACAATCTTAACTCGCCACTGTACACTGA
AAAAGGTGTACCTTGCTCTACCATGAAATTTTGTAATGTTTGCATTACGG
CTGCTGGTAATGCCTTGCTCAAACCCCTACACAATATTCTGAGGATCAAG
TCAAAAGCATCCTGCCCACTGGCTCCAGCATCTAAC
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