mRNA_L-digitata_M_contig10034.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: D7FJP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP5_ECTSI) HSP 1 Score: 197 bits (501), Expect = 1.570e-56 Identity = 169/468 (36.11%), Postives = 194/468 (41.45%), Query Frame = 1
Query: 1 EATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRVDGVSIVIEVLSFEDDLC----SGGDGASARHFFDDLAAANGAASSSCDFCADLSDRRVL*PLHRHDIYRRREPQRPPCTPGGVEYER*KYDAVMPGNMVLCGPGGVDFLFCRAVAV*DIDRMLESARCLILL*TTWYLVCR*SFNPCCRSPQSTSNGNVLSGGQSGARLTFRTVFATRRIATLA*PARRCIEGTHYTLECYRAVAVAGSPS*TASFPIGR*NN*P*SPIARLPSIMPALAPYAKAALAGRQTVAKFRGDAPPEAIRLYLVNVRLPNVGTDILITVNAPYPDEDTAATSMADADTFTADRP--------------PIVEQTHTSQRGNGPGEEALAAEVEGGAE---------------DGVGVA--PEGLPEVAEAGGVGGRRGSVQGSAG--------VSALRSLLRSFKILDWSLF 1275
+ATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQE F S+ DG+SIVIEVLSFE D+ + DGASARHFFDDLAAANGA SS+CDFC DLSD SIMP LA Y K+ALAGRQTVAKFR DAPP+A+RLYLVNVRLPNVGTD+LITVN P PD+DTA +MA A+ F + P+++ TS+ +G A A G + DGVG PEG E+ EAG VG +G S G V+ALR+LL+SF ILDWSLF
Sbjct: 8 DATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKEDGISIVIEVLSFEADINMDEQARKDGASARHFFDDLAAANGATSSACDFCGDLSD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIMPKLASYTKSALAGRQTVAKFRQDAPPDAVRLYLVNVRLPNVGTDLLITVNVPCPDQDTAVRTMAGAECFCSGPSRHTAGANEEISTGAPLIDANKTSETASGA--HAAADGTAAGTDKPFKSAADFSPEATVDGVGGVDKPEGSGEI-EAG-VGEGKGEKHSSPGGGDDVDLGVAALRTLLQSFAILDWSLF 293
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: A0A7S3MHE7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHE7_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.470e-11 Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 4 ATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRVDGVSIVIEVLSFEDDLCSGGDGASARHFFDDLAAANGAASS 243
A+ R LFGGA+E L A Y+DVSD+RQVPDHQE F+ + + VSI++E+L +E+DL GA RH+++DL N AA +
Sbjct: 15 ASKRDLFGGAIEANLGADYLDVSDVRQVPDHQEVFIHKDNEVSIIVELLQYENDL-EDSIGA-VRHYYNDLVEVNEAAEN 92
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: A0A1Z5JLS6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLS6_FISSO) HSP 1 Score: 70.1 bits (170), Expect = 1.840e-10 Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 10 LRKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRVDGVSIVIEVLSFEDDLCSGGDGASARHFFDDLAAANG 231
LR+LFGG++EC +P + DVSD+RQVPDHQE + G +VIE+L ++ D+ D +AR+FF DLA +NG
Sbjct: 3 LRQLFGGSIECKVPEGWRDVSDIRQVPDHQECWQDD-QGNLLVIEILDYQTDVT---DDQAARYFFQDLAESNG 72
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: A0A1Z5KBW9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW9_FISSO) HSP 1 Score: 68.9 bits (167), Expect = 6.510e-10 Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 10 LRKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRVDGVSIVIEVLSFEDDLCSGGDGASARHFFDDLAAANG 231
LR+LFGG++EC +P + DVSD+RQVPDHQE + G +VIE+L ++ D+ D +A +FF DLA +NG
Sbjct: 21 LRQLFGGSIECRIPEGWRDVSDIRQVPDHQECWQDD-QGKLLVIEILDYQADI---NDDQAAHYFFQDLAESNG 90
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: A0A7R9ZKA5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKA5_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 9.260e-10 Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 13 RKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRVDGVSIVIEVLSFEDDLCSGGDGASARHFFDDLAAANG 231
R LFGGA+ C +P+A+ DVSD+RQVPDHQE + +DG +V+E+L ++ GD +++ FF DLA +NG
Sbjct: 11 RPLFGGAISCDIPSAWKDVSDIRQVPDHQECW-QEIDGSLLVVEILEKQEV----GDAEASKFFFQDLAESNG 78
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: A0A2R5GLU9_9STRA (Ran guanine nucleotide release factor n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLU9_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.510e-9 Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 13 RKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRVDGVSIVIEVLSFEDDLCSGGDGASARHFFDDLAAANGAASSSCDF 255
R+LFGGA+ LPAA+ DVS +R+VPDHQE F + SI++EVL S + + ++FF+DLA ANG+ ++ ++
Sbjct: 32 RELFGGAITASLPAAFADVSTVREVPDHQEVFADQNTDRSIIVEVLELT---ASESNETAGKYFFEDLAGANGSEATVIEY 109
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: A0A316ZHV6_9BASI (Mog1p/PsbP-like protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZHV6_9BASI) HSP 1 Score: 67.0 bits (162), Expect = 2.550e-9 Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 13 RKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRV-DGVSIVIEVLSFEDDLCSGGDGASARHF-FDDLAAANGAASSS 246
R LFGGA+ LPAAY+DVSD+RQVPD QE VSR D VS ++E+L C G+G F FD LA N A+SSS
Sbjct: 7 RPLFGGALSASLPAAYLDVSDVRQVPDTQEVHVSRAADDVSCIVELLQ-----CVPGEGDECVKFHFDSLAHDNSASSSS 81
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: A0A7S2YGC5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGC5_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 3.470e-9 Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 1 EATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRVDGVSIVIEVLSFEDDLCSGGDGASARHFFDDLAAANGAASS 243
+T+R L+GGA+ C +P ++D SD+RQVPDHQE + G +VIE+L ++ + + +A+ F+ DLA +NG +S+
Sbjct: 3 NSTVRPLYGGAITCQIPQGWLDASDVRQVPDHQECWQDPQTGALLVIEILDYQTSVSNE---TAAQFFYTDLAESNGISSA 80
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: A0A7S4J414_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J414_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.260e-9 Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 4 ATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVS---------------RVDGVSIVIEVLSFEDDLCSGGDGASARHFFDDLAAANGAASSS 246
A R LFGGA+ LP +++DVSD+R+VPDHQE + R G +++E+LS++D++ GD +AR FFDDLA AN A + S
Sbjct: 32 AAKRPLFGGALTVGLPRSFLDVSDVREVPDHQEVWQDCSGAADASNSGSPGKRPGGQCLIVEILSYQDEV---GDAEAARFFFDDLAEANEAPAHS 124
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Match: UPI0019089561 (Mog1p/PsbP-like protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019089561) HSP 1 Score: 64.3 bits (155), Expect = 1.640e-8 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 13 RKLFGGAMECLLPAAYVDVSDLRQVPDHQEAFVSRVDGVSIVIEVLSF--EDDLCSGGDGASARHFFDDLAAANGAASS 243
R+LFGGA+ LP A++D SDLRQ+PD+QE F+S VD V+ ++E+L ED+L +A+ FD LA N A ++
Sbjct: 1 RQLFGGAITTELPEAFIDASDLRQIPDNQEVFLSPVDDVTFIVEILEKVEEDNLLE-----AAKFHFDSLAHDNDAQNN 74 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10034.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10034.1.1 >prot_L-digitata_M_contig10034.1.1 ID=prot_L-digitata_M_contig10034.1.1|Name=mRNA_L-digitata_M_contig10034.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=156bp MPALAPYAKAALAGRQTVAKFRGDAPPEAIRLYLVNVRLPNVGTDILITVback to top mRNA from alignment at L-digitata_M_contig10034:164..2744+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10034.1.1 ID=mRNA_L-digitata_M_contig10034.1.1|Name=mRNA_L-digitata_M_contig10034.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2581bp|location=Sequence derived from alignment at L-digitata_M_contig10034:164..2744+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10034:164..2744+ >mRNA_L-digitata_M_contig10034.1.1 ID=mRNA_L-digitata_M_contig10034.1.1|Name=mRNA_L-digitata_M_contig10034.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=468bp|location=Sequence derived from alignment at L-digitata_M_contig10034:164..2744+ (Laminaria digitata LdigPH10_18mv male)back to top |