mRNA_L-digitata_M_contig100310.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100310.1.1
Unique NamemRNA_L-digitata_M_contig100310.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 4.240e-47
Identity = 114/126 (90.48%), Postives = 117/126 (92.86%), Query Frame = 1
Query:    1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
            RVTFRRVCDAMQV WHPRVSEVESTLARKVYERV R+RERELR DRWR  KIGAAMIGGGTLLAVTGGLA  XXXXXXXXXXXXXXXXXXXXX  FATTAWMAT+FGAGGAGLVGYKMDRRT+GVK
Sbjct:  122 RVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTGGLAXXXXXXXXXXXXXXXXXXXXXXXSGFATTAWMATLFGAGGAGLVGYKMDRRTKGVK 247          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: W7TZH7_9STRA (Uncharacterized protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZH7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.520e-10
Identity = 49/122 (40.16%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRT 366
            R+  R   DA ++ W   ++ VE+  A  +YE     +E+E      R  KI AA +GGG LLA+TGGLAAP                         +TA +AT+FGA GAGLVGYKM RRT
Sbjct:  161 RIMMRLASDAFEISWR-NIACVEAFTASYLYEIWEARQEKEKINKGLRYAKITAAAVGGGALLALTGGLAAPAIGIGLSAMSATGAVVAG-----LTSTASVATLFGASGAGLVGYKMRRRT 276          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A1V9YBI8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBI8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.340e-7
Identity = 49/132 (37.12%), Postives = 66/132 (50.00%), Query Frame = 1
Query:    1 RVTFRRVCDAMQ-VPWHPRVSEVESTLARKVYERVTRERERELR-----GDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
            R  FR +   +  +PW    SE E+ L   ++   T  + R++      GD  R++KIG A + GGTLLA+TGGL AP                  XX      TA  + +FG  GAGLVG+K DRRT G+K
Sbjct:  155 RAMFRFLVQEIHALPWAVIASE-EAALGMALFLEATELKSRKVASPRRWGDWKRNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVGTXXGSAGGITA-ASVLFGTAGAGLVGFKTDRRTSGIK 284          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A024G2C1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G2C1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.350e-7
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDR-----W-RSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
            R   R +  +M++ W  +V E E+ + R++Y    +  +++  G +     W R++ IGAA + GGTLLAVTGGLAAP                          TA  + +FG  GA ++G+K D+RT+GV+
Sbjct:  125 RTMCRHLAASMEISWS-KVIEEETIIGRELYAEAMKISKKKFGGQKKGIWNWKRNMAIGAAAVTGGTLLAVTGGLAAPAISASLAVFGTTGAAIGTAIGSTAGVTA-TSILFGTTGASVIGFKTDKRTRGVQ 254          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: T0QKH0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QKH0_SAPDV)

HSP 1 Score: 58.9 bits (141), Expect = 1.350e-7
Identity = 50/121 (41.32%), Postives = 62/121 (51.24%), Query Frame = 1
Query:   34 QVPWHPRVSEVESTLARKVYERVTRERERELR-----GDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATV-FGAGGAGLVGYKMDRRTQGVK 378
            ++PW    SE ES L   ++      + R++      GD  R++KIG A + GGTLLA+TGGL AP                 XXX      TA  ATV FG  GAGL GYK DRRT G+K
Sbjct:  184 ELPWTVIASE-ESALGMALFLEANELKSRKVESPRRWGDWKRNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVGXXXASAGGVTA--ATVLFGTAGAGLAGYKTDRRTSGIK 301          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A667ZSF3_9TELE (Transmembrane and coiled-coil domains 4 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZSF3_9TELE)

HSP 1 Score: 56.2 bits (134), Expect = 1.150e-6
Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYE-----------RVTRERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
            RV  R V   ++VP   R+ E E TL  ++ E           R+ RER R+LR    R + IG A +GGGT++ VTGGLAAP   XXXXXXXXXXXXXXXXXXXX    A   ++FGA GAGL GYKM++R   ++
Sbjct:  100 RVLIRHVSCLLRVP-PQRLEEFEETLGERLQEAGEESEXXXSRRLRRERGRKLR----RYLLIGLATVGGGTVIGVTGGLAAPLVAXXXXXXXXXXXXXXXXXXXXXXXXA---SLFGAAGAGLTGYKMNKRVGAIE 228          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A667ZSE4_9TELE (Transmembrane and coiled-coil domains 4 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZSE4_9TELE)

HSP 1 Score: 56.2 bits (134), Expect = 1.200e-6
Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYE-----------RVTRERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
            RV  R V   ++VP   R+ E E TL  ++ E           R+ RER R+LR    R + IG A +GGGT++ VTGGLAAP   XXXXXXXXXXXXXXXXXXXX    A   ++FGA GAGL GYKM++R   ++
Sbjct:  139 RVLIRHVSCLLRVP-PQRLEEFEETLGERLQEAGEESEXXXSRRLRRERGRKLR----RYLLIGLATVGGGTVIGVTGGLAAPLVAXXXXXXXXXXXXXXXXXXXXXXXXA---SLFGAAGAGLTGYKMNKRVGAIE 267          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A1W0AA63_9STRA (B2-adapt-app_C domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA63_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.270e-6
Identity = 51/132 (38.64%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    1 RVTFRRVC-DAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDR----W-RSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
            R  FR +  +A ++PW   +++ ES +   ++  V   + R++   R    W R++KIG A + GGTLLA+TGGL AP                XXXXXXX         +FG  GAGL GYK DRRT G+K
Sbjct:  166 RAMFRFLTHEAHELPWSV-ITKEESAIGMALFLEVNELKSRKVESPRKWNDWKRNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVXXXXXXXXXXXX-XTVLFGTAGAGLAGYKTDRRTSGIK 295          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: UPI0007719508 (transmembrane and coiled-coil domain-containing protein 4 isoform X1 n=3 Tax=Cephus cinctus TaxID=211228 RepID=UPI0007719508)

HSP 1 Score: 55.8 bits (133), Expect = 1.590e-6
Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1
Query:    1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDRWRS--------VKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRR 363
            RV  RR+ + ++VP+   V   E +L  ++ ++V  + E+E +  + R           IG A I GGTL+ VTGGLAAP                        A  A + +VFG  GAGL GYKM++R
Sbjct:  125 RVLARRIAELLKVPFDL-VELYELSLVERLSQKVEPQTEKEQKDAKHREKIKKIKRYASIGLATITGGTLIGVTGGLAAPLIGVGVGTLLGAAGTSAALVLSTTAGAAILGSVFGVAGAGLAGYKMNKR 252          
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A7S4T9W3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9W3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.160e-6
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  106 RERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGV 375
            R+RE+  R    R +KIG A +  GTLLAVTGGLAAP      XXXXXX            A+TA ++TVFG GG  LV  KMD+RT+G+
Sbjct:  373 RKREKTNRQKVIRGLKIGTAGVVAGTLLAVTGGLAAPAVAAGIXXXXXXTVIATVATIA-LASTAAVSTVFGVGGGALVAAKMDKRTRGL 461          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP69_ECTSI4.240e-4790.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TZH7_9STRA1.520e-1040.16Uncharacterized protein n=5 Tax=Nannochloropsis ga... [more]
A0A1V9YBI8_9STRA1.340e-737.12Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024G2C1_9STRA1.350e-732.58Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
T0QKH0_SAPDV1.350e-741.32Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A667ZSF3_9TELE1.150e-649.64Transmembrane and coiled-coil domains 4 n=1 Tax=My... [more]
A0A667ZSE4_9TELE1.200e-649.64Transmembrane and coiled-coil domains 4 n=1 Tax=My... [more]
A0A1W0AA63_9STRA1.270e-638.64B2-adapt-app_C domain-containing protein n=1 Tax=T... [more]
UPI00077195081.590e-633.33transmembrane and coiled-coil domain-containing pr... [more]
A0A7S4T9W3_9STRA4.160e-650.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100310contigL-digitata_M_contig100310:459..836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FP69
Preferred nameTMCO4
PFAMsDUF726
Model size378
Max annot lvl2759|Eukaryota
KEGG koko:K14773
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
Exons1
Evalue9.46e-41
EggNOG OGsKOG2385@1|root,KOG2385@2759|Eukaryota
DescriptionProtein of unknown function (DUF726)
Cds size348
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.0148458-CDS-L-digitata_M_contig100310:458..8061682406606.0148458-CDS-L-digitata_M_contig100310:458..806Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100310 459..806 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.026334-UTR-L-digitata_M_contig100310:806..8361682406606.026334-UTR-L-digitata_M_contig100310:806..836Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100310 807..836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100310.1.1prot_L-digitata_M_contig100310.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100310 459..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100310.1.1

>prot_L-digitata_M_contig100310.1.1 ID=prot_L-digitata_M_contig100310.1.1|Name=mRNA_L-digitata_M_contig100310.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=116bp
MQVPWHPRVSEVESTLARKVYERVTRERERELRGDRWRSVKIGAAMIGGG
TLLAVTGGLAAPAFAAGLAATSSVIGASAAATLSGFATTAWMATVFGAGG
AGLVGYKMDRRTQGVK
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mRNA from alignment at L-digitata_M_contig100310:459..836-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100310.1.1 ID=mRNA_L-digitata_M_contig100310.1.1|Name=mRNA_L-digitata_M_contig100310.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=378bp|location=Sequence derived from alignment at L-digitata_M_contig100310:459..836- (Laminaria digitata LdigPH10_18mv male)
AGGGTAACGTTCCGAAGAGTCTGCGATGCGATGCAAGTCCCCTGGCACCC GCGCGTGTCCGAGGTCGAGAGCACCCTCGCGCGCAAGGTCTACGAGCGCG TCACTCGCGAGAGAGAGCGGGAGCTGCGAGGAGACCGCTGGAGGAGCGTG AAGATAGGCGCCGCCATGATCGGCGGGGGCACCCTCCTGGCGGTGACGGG GGGGCTGGCGGCTCCCGCCTTTGCGGCTGGGCTCGCGGCTACCTCGTCTG TGATTGGTGCGTCGGCCGCGGCGACGCTGTCTGGGTTTGCTACGACGGCG TGGATGGCTACCGTGTTTGGCGCGGGGGGGGCGGGGCTGGTGGGGTATAA GATGGACAGGCGGACGCAGGGGGTCAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100310:459..836-

>mRNA_L-digitata_M_contig100310.1.1 ID=mRNA_L-digitata_M_contig100310.1.1|Name=mRNA_L-digitata_M_contig100310.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=348bp|location=Sequence derived from alignment at L-digitata_M_contig100310:459..836- (Laminaria digitata LdigPH10_18mv male)
ATGCAAGTCCCCTGGCACCCGCGCGTGTCCGAGGTCGAGAGCACCCTCGC
GCGCAAGGTCTACGAGCGCGTCACTCGCGAGAGAGAGCGGGAGCTGCGAG
GAGACCGCTGGAGGAGCGTGAAGATAGGCGCCGCCATGATCGGCGGGGGC
ACCCTCCTGGCGGTGACGGGGGGGCTGGCGGCTCCCGCCTTTGCGGCTGG
GCTCGCGGCTACCTCGTCTGTGATTGGTGCGTCGGCCGCGGCGACGCTGT
CTGGGTTTGCTACGACGGCGTGGATGGCTACCGTGTTTGGCGCGGGGGGG
GCGGGGCTGGTGGGGTATAAGATGGACAGGCGGACGCAGGGGGTCAAG
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