mRNA_L-digitata_M_contig100310.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI) HSP 1 Score: 171 bits (434), Expect = 4.240e-47 Identity = 114/126 (90.48%), Postives = 117/126 (92.86%), Query Frame = 1
Query: 1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
RVTFRRVCDAMQV WHPRVSEVESTLARKVYERV R+RERELR DRWR KIGAAMIGGGTLLAVTGGLA XXXXXXXXXXXXXXXXXXXXX FATTAWMAT+FGAGGAGLVGYKMDRRT+GVK
Sbjct: 122 RVTFRRVCDAMQVRWHPRVSEVESTLARKVYERVARDRERELRTDRWRGFKIGAAMIGGGTLLAVTGGLAXXXXXXXXXXXXXXXXXXXXXXXSGFATTAWMATLFGAGGAGLVGYKMDRRTKGVK 247
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: W7TZH7_9STRA (Uncharacterized protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZH7_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.520e-10 Identity = 49/122 (40.16%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRT 366
R+ R DA ++ W ++ VE+ A +YE +E+E R KI AA +GGG LLA+TGGLAAP +TA +AT+FGA GAGLVGYKM RRT
Sbjct: 161 RIMMRLASDAFEISWR-NIACVEAFTASYLYEIWEARQEKEKINKGLRYAKITAAAVGGGALLALTGGLAAPAIGIGLSAMSATGAVVAG-----LTSTASVATLFGASGAGLVGYKMRRRT 276
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A1V9YBI8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBI8_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.340e-7 Identity = 49/132 (37.12%), Postives = 66/132 (50.00%), Query Frame = 1
Query: 1 RVTFRRVCDAMQ-VPWHPRVSEVESTLARKVYERVTRERERELR-----GDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
R FR + + +PW SE E+ L ++ T + R++ GD R++KIG A + GGTLLA+TGGL AP XX TA + +FG GAGLVG+K DRRT G+K
Sbjct: 155 RAMFRFLVQEIHALPWAVIASE-EAALGMALFLEATELKSRKVASPRRWGDWKRNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVGTXXGSAGGITA-ASVLFGTAGAGLVGFKTDRRTSGIK 284
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A024G2C1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G2C1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.350e-7 Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 1
Query: 1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDR-----W-RSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
R R + +M++ W +V E E+ + R++Y + +++ G + W R++ IGAA + GGTLLAVTGGLAAP TA + +FG GA ++G+K D+RT+GV+
Sbjct: 125 RTMCRHLAASMEISWS-KVIEEETIIGRELYAEAMKISKKKFGGQKKGIWNWKRNMAIGAAAVTGGTLLAVTGGLAAPAISASLAVFGTTGAAIGTAIGSTAGVTA-TSILFGTTGASVIGFKTDKRTRGVQ 254
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: T0QKH0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QKH0_SAPDV) HSP 1 Score: 58.9 bits (141), Expect = 1.350e-7 Identity = 50/121 (41.32%), Postives = 62/121 (51.24%), Query Frame = 1
Query: 34 QVPWHPRVSEVESTLARKVYERVTRERERELR-----GDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATV-FGAGGAGLVGYKMDRRTQGVK 378
++PW SE ES L ++ + R++ GD R++KIG A + GGTLLA+TGGL AP XXX TA ATV FG GAGL GYK DRRT G+K
Sbjct: 184 ELPWTVIASE-ESALGMALFLEANELKSRKVESPRRWGDWKRNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVGXXXASAGGVTA--ATVLFGTAGAGLAGYKTDRRTSGIK 301
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A667ZSF3_9TELE (Transmembrane and coiled-coil domains 4 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZSF3_9TELE) HSP 1 Score: 56.2 bits (134), Expect = 1.150e-6 Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYE-----------RVTRERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
RV R V ++VP R+ E E TL ++ E R+ RER R+LR R + IG A +GGGT++ VTGGLAAP XXXXXXXXXXXXXXXXXXXX A ++FGA GAGL GYKM++R ++
Sbjct: 100 RVLIRHVSCLLRVP-PQRLEEFEETLGERLQEAGEESEXXXSRRLRRERGRKLR----RYLLIGLATVGGGTVIGVTGGLAAPLVAXXXXXXXXXXXXXXXXXXXXXXXXA---SLFGAAGAGLTGYKMNKRVGAIE 228
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A667ZSE4_9TELE (Transmembrane and coiled-coil domains 4 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZSE4_9TELE) HSP 1 Score: 56.2 bits (134), Expect = 1.200e-6 Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYE-----------RVTRERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
RV R V ++VP R+ E E TL ++ E R+ RER R+LR R + IG A +GGGT++ VTGGLAAP XXXXXXXXXXXXXXXXXXXX A ++FGA GAGL GYKM++R ++
Sbjct: 139 RVLIRHVSCLLRVP-PQRLEEFEETLGERLQEAGEESEXXXSRRLRRERGRKLR----RYLLIGLATVGGGTVIGVTGGLAAPLVAXXXXXXXXXXXXXXXXXXXXXXXXA---SLFGAAGAGLTGYKMNKRVGAIE 267
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A1W0AA63_9STRA (B2-adapt-app_C domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA63_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.270e-6 Identity = 51/132 (38.64%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 1 RVTFRRVC-DAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDR----W-RSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGVK 378
R FR + +A ++PW +++ ES + ++ V + R++ R W R++KIG A + GGTLLA+TGGL AP XXXXXXX +FG GAGL GYK DRRT G+K
Sbjct: 166 RAMFRFLTHEAHELPWSV-ITKEESAIGMALFLEVNELKSRKVESPRKWNDWKRNLKIGTAAVAGGTLLALTGGLVAPALAAGFTALGGVGAVVXXXXXXXXXXXX-XTVLFGTAGAGLAGYKTDRRTSGIK 295
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: UPI0007719508 (transmembrane and coiled-coil domain-containing protein 4 isoform X1 n=3 Tax=Cephus cinctus TaxID=211228 RepID=UPI0007719508) HSP 1 Score: 55.8 bits (133), Expect = 1.590e-6 Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1
Query: 1 RVTFRRVCDAMQVPWHPRVSEVESTLARKVYERVTRERERELRGDRWRS--------VKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRR 363
RV RR+ + ++VP+ V E +L ++ ++V + E+E + + R IG A I GGTL+ VTGGLAAP A A + +VFG GAGL GYKM++R
Sbjct: 125 RVLARRIAELLKVPFDL-VELYELSLVERLSQKVEPQTEKEQKDAKHREKIKKIKRYASIGLATITGGTLIGVTGGLAAPLIGVGVGTLLGAAGTSAALVLSTTAGAAILGSVFGVAGAGLAGYKMNKR 252
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Match: A0A7S4T9W3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9W3_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 4.160e-6 Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 106 RERERELRGDRWRSVKIGAAMIGGGTLLAVTGGLAAPXXXXXXXXXXXXXXXXXXXXXXXFATTAWMATVFGAGGAGLVGYKMDRRTQGV 375
R+RE+ R R +KIG A + GTLLAVTGGLAAP XXXXXX A+TA ++TVFG GG LV KMD+RT+G+
Sbjct: 373 RKREKTNRQKVIRGLKIGTAGVVAGTLLAVTGGLAAPAVAAGIXXXXXXTVIATVATIA-LASTAAVSTVFGVGGGALVAAKMDKRTRGL 461 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100310.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100310.1.1 >prot_L-digitata_M_contig100310.1.1 ID=prot_L-digitata_M_contig100310.1.1|Name=mRNA_L-digitata_M_contig100310.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=116bp MQVPWHPRVSEVESTLARKVYERVTRERERELRGDRWRSVKIGAAMIGGGback to top mRNA from alignment at L-digitata_M_contig100310:459..836- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100310.1.1 ID=mRNA_L-digitata_M_contig100310.1.1|Name=mRNA_L-digitata_M_contig100310.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=378bp|location=Sequence derived from alignment at L-digitata_M_contig100310:459..836- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100310:459..836- >mRNA_L-digitata_M_contig100310.1.1 ID=mRNA_L-digitata_M_contig100310.1.1|Name=mRNA_L-digitata_M_contig100310.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=348bp|location=Sequence derived from alignment at L-digitata_M_contig100310:459..836- (Laminaria digitata LdigPH10_18mv male)back to top |