mRNA_L-digitata_M_contig1003.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1003.1.1
Unique NamemRNA_L-digitata_M_contig1003.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1003.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1003contigL-digitata_M_contig1003:9066..11953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1869
Hectar predicted targeting categoryother localisation
Exons4
Cds size975
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1003.1.1prot_L-digitata_M_contig1003.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1003 9087..10654 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.7608683-UTR-L-digitata_M_contig1003:9065..90861682406605.7608683-UTR-L-digitata_M_contig1003:9065..9086Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1003 9066..9086 +
1682406605.7905054-UTR-L-digitata_M_contig1003:10654..110321682406605.7905054-UTR-L-digitata_M_contig1003:10654..11032Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1003 10655..11032 +
1682406605.7980144-UTR-L-digitata_M_contig1003:11458..119531682406605.7980144-UTR-L-digitata_M_contig1003:11458..11953Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1003 11459..11953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.7684402-CDS-L-digitata_M_contig1003:9086..95201682406605.7684402-CDS-L-digitata_M_contig1003:9086..9520Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1003 9087..9520 +
1682406605.7760096-CDS-L-digitata_M_contig1003:9717..101081682406605.7760096-CDS-L-digitata_M_contig1003:9717..10108Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1003 9718..10108 +
1682406605.7831588-CDS-L-digitata_M_contig1003:10504..106541682406605.7831588-CDS-L-digitata_M_contig1003:10504..10654Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1003 10505..10654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1003.1.1

>prot_L-digitata_M_contig1003.1.1 ID=prot_L-digitata_M_contig1003.1.1|Name=mRNA_L-digitata_M_contig1003.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=325bp
MACLGLCMASRNLEMSHIVVMHDTRRLLWLRRKQHAFRDKHRDSRVPVLS
ASSLTVESFPSSISEGKKLIDELREIRSLLAWGVRRLRYSWECSKRESTA
LWPESLREMTFGPNFNHPDIDIIWPGSLEALEFGRDFDQPLYGVVWPTTL
KRFEFGTYFDQAIEDVRWPDSLEYLAFGEQFNSRVKIVVWPSLLKGLSFR
ETFNQKIEKVEWPASIQRVSFGENFNQKTHKVVWPASLERLTFGSAYNQS
LAGVEWPASLHSLTFGTKFNWLIAELVWPDTLEMVWFGDSFDQPIDNVVW
PAALKHLTFRSNFNQPIEAVAWPP*
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mRNA from alignment at L-digitata_M_contig1003:9066..11953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1003.1.1 ID=mRNA_L-digitata_M_contig1003.1.1|Name=mRNA_L-digitata_M_contig1003.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2888bp|location=Sequence derived from alignment at L-digitata_M_contig1003:9066..11953+ (Laminaria digitata LdigPH10_18mv male)
GCGTCGACGACAAACCTCGAGATGGCGTGCCTGGGCCTGTGCATGGCCTC
GCGGAACCTGGAGATGTCGCACATCGTGGTCATGCATGACACTCGGCGTC
TCTTATGGCTGCGCCGCAAGCAACACGCGTTCCGAGACAAGCATCGTGAC
TCGCGCGTCCCGGTTCTGAGTGCGTCTTCGTTAACCGTCGAGTCGTTCCC
ATCGTCCATTTCGGAGGGAAAAAAATTGATCGACGAATTGCGCGAAATAC
GCAGTTTGCTCGCTTGGGGTGTACGACGCCTACGGTATTCGTGGGAGTGC
AGCAAACGCGAGAGTACGGCGTTGTGGCCCGAGTCACTGCGCGAGATGAC
GTTCGGGCCAAACTTCAACCACCCAGACATCGACATAATCTGGCCGGGCT
CCCTGGAAGCTTTAGAATTCGGTCGGGATTTTGACCAACCTTTGTATGGG
GTCGTGTGGCCGCCGTTGCTAAAGCGATTGACCTTCAAAGACGGCTTTCC
CCAACGACTCCAAGGAGCCGTATTGCCCACTTCGCTGACACAGCTGACGT
TCGGGTTTCTTTTCGATAAACCTATCGACAGGATGGTGTGGCCGAACTCG
CTGCAGAGTCTTACGTTTGGCGCTTGCTTCAATCAATCTATCAACGAGTC
AGGTGGCCAACCACTCTGAAGCGTTTCGAGTTTGGGACATACTTCGACCA
GGCTATCGAAGACGTCAGGTGGCCGGATTCGTTGGAGTACTTGGCGTTCG
GTGAACAATTCAACTCGAGGGTAAAGATCGTCGTGTGGCCGTCTCTTCTA
AAGGGGTTATCGTTCAGGGAAACGTTCAACCAGAAGATCGAGAAGGTTGA
GTGGCCTGCGTCGATTCAGCGGGTATCCTTTGGGGAAAATTTCAACCAGA
AAACACACAAGGTCGTCTGGCCCGCGTCTCTTGAGCGGTTGACCTTCGGG
TCAGCATACAACCAGTCGTTGGCCGGAGTGGAATGGCCTGCCTCGCTTCA
TAGCTTAACATTTGGGACAAAGTTCAACTGGCTTATCGCAGAGGTGGAGT
TGTCTGCTTCTCTGATTTGTTTGGAGTTTGGGTATTACTTCGACCAGCCA
ATCGACAAGGTAGTGTGGCCTTCCTCCCTGAGACATTAGGCCTTTGGTTC
CGTCCTCAGCCAACCATTGGACAGAGTCGAATGGTCTGCATCGCTCCACC
GATTGACGCTGGGGACTAAGATGGGCAAAGCCACCCAGGTCTTCGTTTGG
TGTAGTCGCGATACAACCTGGACGTTTGCGCCTACCTTCCGCCAACTTAC
ACTAGCCGGCGTGCGTCCTGCCATTTTGCAGCACCTAGGGCTGTCGGTGG
ACACGCCACGGCCTATCGACTGGGTCGTGTGGCCAACTTCACTGCTGTAT
CTGACGTTTAGGCCTACCTTCAACCAGCGGATCAACGAGCTGGTCTGGCC
GGACACGCTCGAGATGGTTTGGTTCGGGGATAGCTTCGATCAGCCCATCG
ACAACGTCGTGTGGCCTGCCGCGCTCAAGCACTTGACGTTCAGATCCAAC
TTCAACCAACCGATCGAAGCAGTCGCGTGGCCGCCCTAACTGCAATATTT
GACGTGTGGGGGGGAGTTCAGCCAGCCCATCGACGGGGTCACGTGGCCGG
TTTCGCTAAAGAAGTTTGCGTTTGGTGCATCCTTCAAAGGACAGGTCAAA
GGGGTCGTGTGGCCGAGATCGATTGGAATATTGACGTTGGGTGACGGCTT
CGACAGGCCTGTCGACGGGGTCGGGTGGCCTGCATCGCTGAAGCGTTTAA
CGTTTGGTGACAACTTCAACCAACCTGTCAACCAAGTGACGTGGTCGGCG
ATGGTTGAGACTATTTCGTTCGGGGATCGATTCGATCAGCCCATTCATGA
GGCGGTGTGGCCTGCCTCCCGCAAGGTTCTGGCCTTCGGCAAGAACTTTA
ACCAGGCGATCGATAGGGTCCTTTAGCCGGAATCGCTTAAACGACTAACG
TTCGGTGATAGCTTCAACCGGCCTCTTAGCCGGGTTACATGGCCAGCTTC
CCTGCAGCGGTTAGATAATAGGGGCAGGCCTCAGAGTATCAACCGGGCCG
TAGTTGCTCCTGCGTCGCCAAGACCACCAGCCAAGAGGGGGCCTCGTACA
CTCACATTCACGTATTCCGAATCCCCCAACCAGGTAGTCCCAACAGTTGT
TATTAAGTCACAACCACCACACACTCTTAGGGTTCCCCCGTTCTTTAACG
ATCCCATCGAAGGAATCGATTGGAGTCCAGGTGTTCAGCGTATCACTCTT
GGGGCTGACTTCATTCTGCCAATCGACTGTATCGCGTGGCCTCCGCCGCT
GGAGCGCTTGACGTTCGGGGACTGCTTTGACCTCCTTATTGAGGGGGTCC
GGTGGCCTGCAGGGCTGCAGTATATGACCTTCGGCGATGGCTTCAACCAG
GCCATCCACCTAGTTGAGTGGCCACCAGCGCTGCAGCATTTGACCTTCGG
GGATGACTTTAACCAGACCATGCACCTAGTTGAGTGGCCTGCGGCGCTTG
AGCATTTGACCTTCGGGGCTTTGTTTGACCAACAAATTTTTGGGGTCCGG
TGGCCCGCAGCGCTGCTGCGTTTGACCTTCGAGACACGCTTCAATCAACC
GATAAGCGGCGGAGTCAGTTGGCCCGCAGGGCTGCAGCATTTGACCTTCG
GGGCTTGCTTCGACCAACCCATCAAAGATGCCGGTTTGCCATCTTCCGTG
ACACGTTTGACGTTTGGATATGACTTCAACCAACCCGTCGGAGGTGTCAA
GTGGCCTAGCTCGGTGCAACGTCTGACCCTCGGGTATCGTTTTGACCAAC
CCGTCCATCAAGAAGTCGTGTGGCCGATCCACCTAGAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig1003:9066..11953+

>mRNA_L-digitata_M_contig1003.1.1 ID=mRNA_L-digitata_M_contig1003.1.1|Name=mRNA_L-digitata_M_contig1003.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=975bp|location=Sequence derived from alignment at L-digitata_M_contig1003:9066..11953+ (Laminaria digitata LdigPH10_18mv male)
ATGGCGTGCCTGGGCCTGTGCATGGCCTCGCGGAACCTGGAGATGTCGCA
CATCGTGGTCATGCATGACACTCGGCGTCTCTTATGGCTGCGCCGCAAGC
AACACGCGTTCCGAGACAAGCATCGTGACTCGCGCGTCCCGGTTCTGAGT
GCGTCTTCGTTAACCGTCGAGTCGTTCCCATCGTCCATTTCGGAGGGAAA
AAAATTGATCGACGAATTGCGCGAAATACGCAGTTTGCTCGCTTGGGGTG
TACGACGCCTACGGTATTCGTGGGAGTGCAGCAAACGCGAGAGTACGGCG
TTGTGGCCCGAGTCACTGCGCGAGATGACGTTCGGGCCAAACTTCAACCA
CCCAGACATCGACATAATCTGGCCGGGCTCCCTGGAAGCTTTAGAATTCG
GTCGGGATTTTGACCAACCTTTGTATGGGGTCGTGTGGCCAACCACTCTG
AAGCGTTTCGAGTTTGGGACATACTTCGACCAGGCTATCGAAGACGTCAG
GTGGCCGGATTCGTTGGAGTACTTGGCGTTCGGTGAACAATTCAACTCGA
GGGTAAAGATCGTCGTGTGGCCGTCTCTTCTAAAGGGGTTATCGTTCAGG
GAAACGTTCAACCAGAAGATCGAGAAGGTTGAGTGGCCTGCGTCGATTCA
GCGGGTATCCTTTGGGGAAAATTTCAACCAGAAAACACACAAGGTCGTCT
GGCCCGCGTCTCTTGAGCGGTTGACCTTCGGGTCAGCATACAACCAGTCG
TTGGCCGGAGTGGAATGGCCTGCCTCGCTTCATAGCTTAACATTTGGGAC
AAAGTTCAACTGGCTTATCGCAGAGCTGGTCTGGCCGGACACGCTCGAGA
TGGTTTGGTTCGGGGATAGCTTCGATCAGCCCATCGACAACGTCGTGTGG
CCTGCCGCGCTCAAGCACTTGACGTTCAGATCCAACTTCAACCAACCGAT
CGAAGCAGTCGCGTGGCCGCCCTAA
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