mRNA_L-digitata_M_contig10028.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10028.1.1 vs. uniprot
Match: D7FZ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ23_ECTSI) HSP 1 Score: 195 bits (496), Expect = 2.520e-56 Identity = 98/125 (78.40%), Postives = 109/125 (87.20%), Query Frame = 1
Query: 1 LHVRSCSRLAWSAALATTGAFIAVSPNNAPRDEYLALFRRNMGLLGASLVGPAVYSFLLYDGSKANINTYVRVITFGFTWGYLITFALELIVATGFQLLVLAAMEPAAFKLTPRVPAIFLPWVLR 375
L +RS SR+ +A +AT GAF+AVSPNNAPRD YLALFRRN+GL+ ASLVGPAVYSFLLYDGSKANINTYVRV+TF FTWGYLI+FALE++ AT FQL VLA MEP AF LTP VPAIFLPWVLR
Sbjct: 444 LTLRSWSRIMGAAGIATAGAFLAVSPNNAPRDLYLALFRRNLGLIAASLVGPAVYSFLLYDGSKANINTYVRVVTFAFTWGYLISFALEIVAATSFQLCVLAVMEPKAFDLTPHVPAIFLPWVLR 568
BLAST of mRNA_L-digitata_M_contig10028.1.1 vs. uniprot
Match: A0A6H5L6A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A5_9PHAE) HSP 1 Score: 188 bits (478), Expect = 5.140e-53 Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = 1
Query: 1 LHVRSCSRLAWSAALATTGAFIAVSPNNAPRDEYLALFRRNMGLLGASLVGPAVYSFLLYDGSKANINTYVRVITFGFTWGYLITFALELIVATGFQLLVLAAMEPAAFKLTPRVPAIFLPWVLR 375
L +RS SR+ +A +AT GAF+AVSPNNA RD YLALFRRN+GL+ ASLVGPAVYS LLYDGSKANINTYVRV+TF FTWGYLI+FALE++ AT FQL VLA MEP AF LTP VPAIFLPWVLR
Sbjct: 599 LTLRSWSRITGAAGIATAGAFLAVSPNNAARDLYLALFRRNLGLIAASLVGPAVYSCLLYDGSKANINTYVRVVTFAFTWGYLISFALEIVAATFFQLCVLAVMEPKAFDLTPHVPAIFLPWVLR 723
BLAST of mRNA_L-digitata_M_contig10028.1.1 vs. uniprot
Match: A0A835YXW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW0_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.200e-27 Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1
Query: 70 VSPNNAPRDEYLALFRRNMGLLGASLVGPAVYSFLLYDGSKANINTYVRVITFGFTWGYLITFALELIVATGFQLLVLAAMEPAAFKLTPRVPAIFLPWVLR 375
VSP NAPR+ Y+ LF+RN+ LLG SLVGP ++ L+D SKA+ N + FTWGYL+T LEL++ T +++ VL MEP A+ P VPAI+LPWVLR
Sbjct: 88 VSPRNAPREVYMQLFQRNLLLLGTSLVGPGLFMLTLHDSSKASANAVISAFFHAFTWGYLLTVLLELVLTTVYRMAVLQVMEPQAYSACPDVPAIWLPWVLR 189
BLAST of mRNA_L-digitata_M_contig10028.1.1 vs. uniprot
Match: B5YMS3_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMS3_THAPS) HSP 1 Score: 90.1 bits (222), Expect = 1.770e-18 Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = 1
Query: 13 SCSRLAWSAALATTGAFIAVSPNNAPRDEYLALFRRNMGLLGASLVGPAVYSFLLYDGSKANINTYVRVITFGFTWGYLITFALELIVATGFQLLVLAAMEPAAFKLTPRVPAIFLPWVLR 375
S ++A+S ++ AVSP P EY LF + + +G S + P +YDG NINT + FT GY + F LE+IV T +L V EPA F LTP+VP+I LPWVLR
Sbjct: 588 SLQKIAFSTIGVALLSYCAVSPRTLPFPEYNRLFLQTLSTVGLSAIIPLAMLMCVYDGKYNNINTIIGTFHVSFTLGYTLAFVLEIIVTTALRLGVFMIWEPAIFSLTPKVPSIILPWVLR 708
BLAST of mRNA_L-digitata_M_contig10028.1.1 vs. uniprot
Match: A0A7S3Y3H7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3H7_HETAK) HSP 1 Score: 81.6 bits (200), Expect = 1.490e-15 Identity = 51/123 (41.46%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 1 LHVRSCSRLAWSAALATTGAFIAVSPNNAPRDEYLALFRRNMGLLGASLVGPAVYSFLLYDGSKANINTYVRVITFGFTWGYLITFALELIVATGFQLLVLAAMEPAAFKLTPRVPAIFLPWV 369
L V S RLA L +++AV P +AP+ Y R N LL SL+GP LLY N N +++V GF + Y + F E I+AT F+L + +E FKL+P+VPAIFLPWV
Sbjct: 159 LSVGSAIRLALMTTLGIVLSYVAVVPYSAPQALYNIKVRENFTLLFLSLIGPLGIIGLLYSTKAVNFNMFIKVFHLGF-FSYFLVFISEYIMATFFRLGIFYWLEKDIFKLSPKVPAIFLPWV 280
BLAST of mRNA_L-digitata_M_contig10028.1.1 vs. uniprot
Match: A0A7S1BAJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BAJ9_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 6.330e-14 Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 1
Query: 13 SCSRLAWSAALATTGAFIAVSPNNAPRDEYLALFRRNMGLLGASLVGPAVYSFLLYDGSKANINTYVRVITFGFTWGYLITFALELIVATGFQLLVLAAMEPAAFKLTPRVPAIFLPWVLR 375
S +L++ A ++ AVSP + P +Y F+RN L+ S + +Y F ++D ++ +INT V FT GY +F E+++AT +L V EP+ F LTP +P + LPWVLR
Sbjct: 150 SIQKLSFVLATTLLLSYCAVSPRSLPIIDYNDHFKRNCRLVAISALPSLLYCFCVFDHAENDINTIVGTFYTAFTVGYAGSFVSEIVLATLLRLGVFRIWEPSIFDLTPEIPVVVLPWVLR 270
BLAST of mRNA_L-digitata_M_contig10028.1.1 vs. uniprot
Match: A0A7S2A2U6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2U6_TRICV) HSP 1 Score: 76.6 bits (187), Expect = 8.370e-14 Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 43 LATTGAFI---AVSPNNAPRDEYLALFRRNMGLLGASLVGPAVYSFLLYDGSKANINTYVRVITFGFTWGYLITFALELIVATGFQLLVLAAMEPAAFKLTPRVPAIFLPWVLR 375
LA AF+ AVSP + P + Y A F RN+ + LV P L++D + +IN+ + T GY+ TF LE+++ T +L V A EP+ F +TP+VP + LPWVLR
Sbjct: 169 LALGSAFLCYSAVSPLSLPDEPYNAEFLRNLRVSSLVLVTPLFLFSLVFDPKQNDINSVIGTFYTSCTVGYVSTFLLEILLTTALRLAVFAMWEPSIFSMTPKVPTVVLPWVLR 282 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10028.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10028.1.1 >prot_L-digitata_M_contig10028.1.1 ID=prot_L-digitata_M_contig10028.1.1|Name=mRNA_L-digitata_M_contig10028.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=126bp LHVRSCSRLAWSAALATTGAFIAVSPNNAPRDEYLALFRRNMGLLGASLVback to top mRNA from alignment at L-digitata_M_contig10028:820..5730+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10028.1.1 ID=mRNA_L-digitata_M_contig10028.1.1|Name=mRNA_L-digitata_M_contig10028.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4911bp|location=Sequence derived from alignment at L-digitata_M_contig10028:820..5730+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10028:820..5730+ >mRNA_L-digitata_M_contig10028.1.1 ID=mRNA_L-digitata_M_contig10028.1.1|Name=mRNA_L-digitata_M_contig10028.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=378bp|location=Sequence derived from alignment at L-digitata_M_contig10028:820..5730+ (Laminaria digitata LdigPH10_18mv male)back to top |