mRNA_L-digitata_M_contig100225.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100225.1.1
Unique NamemRNA_L-digitata_M_contig100225.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: A0A6H5JE14_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE14_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.480e-33
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    4 AAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            A P++ NILEWHYVITGTKGSPYEGGHYHGKLKFPPEYP KPPSVM++TPNGRFACSR
Sbjct:   27 AMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSR 84
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BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: W2KBB3_PHYPR (UBC core domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2KBB3_PHYPR)

HSP 1 Score: 116 bits (290), Expect = 4.680e-31
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            QA PLETNILEWHYVITGTKG+PYEGG YHGKLKFPPEYP KPPSVM++TPNGRF  ++
Sbjct:   26 QAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQ 84
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BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: A0A0P1AWA5_PLAHL (Ubiquitin-conjugating enzyme e2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA5_PLAHL)

HSP 1 Score: 115 bits (287), Expect = 1.200e-30
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            QA PLETNILEWHYVITGTKG+PYEGG YHG+LKFPPEYP KPPSVM++TPNGRF  ++
Sbjct:   22 QAVPLETNILEWHYVITGTKGTPYEGGFYHGRLKFPPEYPMKPPSVMMITPNGRFKTNQ 80
[Close]
BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: A0A484E228_BRELC (UBC core domain-containing protein n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E228_BRELC)

HSP 1 Score: 115 bits (287), Expect = 1.360e-30
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            QA PLETNILEWHYVITGT GSPYEGG YHGKLKFPPEYP KPPSVM++TPNGRF  ++
Sbjct:   26 QAVPLETNILEWHYVITGTTGSPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQ 84
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BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: A0A3F2RXI9_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXI9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.390e-30
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            QA P+ETNILEWHYVITGTKG+PYEGG+YHGKLKFPPEYP KPPSVM+ TPNGRF  ++
Sbjct:   26 QAVPVETNILEWHYVITGTKGTPYEGGYYHGKLKFPPEYPMKPPSVMMTTPNGRFKTNQ 84
[Close]
BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: H3GEL4_PHYRM (UBC core domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GEL4_PHYRM)

HSP 1 Score: 115 bits (287), Expect = 1.390e-30
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            QA P+ETNILEWHYVITGTKG+PYEGG+YHGKLKFPPEYP KPP+VM++TPNGRF  ++
Sbjct:   26 QAVPVETNILEWHYVITGTKGTPYEGGYYHGKLKFPPEYPMKPPAVMMITPNGRFKTNQ 84
[Close]
BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: A0A3R7J076_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J076_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.310e-30
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            +AAPLE NILEWHYVITGT+G+PYEGG YHGKLKFPPEYP KPPSV++LTPNGRF  +R
Sbjct:   26 RAAPLEKNILEWHYVITGTEGTPYEGGFYHGKLKFPPEYPMKPPSVLMLTPNGRFDVNR 84
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BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: A0A662YDA8_9STRA (UBC core domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDA8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.310e-30
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            QA PLETNILEWHYVITGT GSPYEGG+YHGKLKFPPEYP KPPSV++ TPNGRF  ++
Sbjct:   26 QAVPLETNILEWHYVITGTAGSPYEGGYYHGKLKFPPEYPMKPPSVLMCTPNGRFKTNQ 84
[Close]
BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: D0NAC0_PHYIT (Ubiquitin-conjugating enzyme E2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NAC0_PHYIT)

HSP 1 Score: 111 bits (277), Expect = 1.270e-29
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            +AAPLE NILEWHYVITGT+G+PYEGG YHGKLKFPPEYP KPPSV++ TPNGRF  +R
Sbjct:   22 RAAPLENNILEWHYVITGTEGTPYEGGFYHGKLKFPPEYPMKPPSVIMCTPNGRFDINR 80
[Close]
BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Match: W2FYI4_PHYPR (UBC core domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2FYI4_PHYPR)

HSP 1 Score: 111 bits (277), Expect = 1.310e-29
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILTPNGRFACSR 177
            +AAPLE NILEWHYVITGT+G+PYEGG YHGKLKFPPEYP KPPSV++ TPNGRF  +R
Sbjct:   26 RAAPLEKNILEWHYVITGTEGTPYEGGFYHGKLKFPPEYPMKPPSVIMCTPNGRFEINR 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100225.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE14_9PHAE2.480e-3387.93UBC core domain-containing protein n=2 Tax=Ectocar... [more]
W2KBB3_PHYPR4.680e-3183.05UBC core domain-containing protein n=12 Tax=Phytop... [more]
A0A0P1AWA5_PLAHL1.200e-3081.36Ubiquitin-conjugating enzyme e2 n=1 Tax=Plasmopara... [more]
A0A484E228_BRELC1.360e-3083.05UBC core domain-containing protein n=2 Tax=Bremia ... [more]
A0A3F2RXI9_9STRA1.390e-3081.36UBC core domain-containing protein n=3 Tax=Phytoph... [more]
H3GEL4_PHYRM1.390e-3079.66UBC core domain-containing protein n=6 Tax=Phytoph... [more]
A0A3R7J076_9STRA4.310e-3081.36UBC core domain-containing protein n=3 Tax=Phytoph... [more]
A0A662YDA8_9STRA6.310e-3081.36UBC core domain-containing protein n=2 Tax=Nothoph... [more]
D0NAC0_PHYIT1.270e-2979.66Ubiquitin-conjugating enzyme E2 n=2 Tax=Phytophtho... [more]
W2FYI4_PHYPR1.310e-2979.66UBC core domain-containing protein n=10 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100225contigL-digitata_M_contig100225:504..801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G983
PFAMsUQ_con
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K04554
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.74e-34
EggNOG OGsKOG0894@1|root,KOG0894@2759|Eukaryota
EC2.3.2.23
Descriptionubiquitin-dependent ERAD pathway
Cds size180
COG categoryS
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.1846874-CDS-L-digitata_M_contig100225:503..6171682406605.1846874-CDS-L-digitata_M_contig100225:503..617Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100225 504..617 +
1682406605.193485-CDS-L-digitata_M_contig100225:735..8011682406605.193485-CDS-L-digitata_M_contig100225:735..801Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100225 736..801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100225.1.1prot_L-digitata_M_contig100225.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100225 504..801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100225.1.1

>prot_L-digitata_M_contig100225.1.1 ID=prot_L-digitata_M_contig100225.1.1|Name=mRNA_L-digitata_M_contig100225.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=60bp
QAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPRKPPSVMILT
PNGRFACSR*
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mRNA from alignment at L-digitata_M_contig100225:504..801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100225.1.1 ID=mRNA_L-digitata_M_contig100225.1.1|Name=mRNA_L-digitata_M_contig100225.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=298bp|location=Sequence derived from alignment at L-digitata_M_contig100225:504..801+ (Laminaria digitata LdigPH10_18mv male)
CAGGCGGCACCTCTGGAAACCAACATCCTGGAGTGGCACTACGTCATCAC
CGGCACGAAGGGGTCTCCATACGAAGGAGGCCACTACCACGGAAAGCTCA
AGTTCCCCCCTGAGGTGCAGTCCTAGACCATACGAGAGTACACGAATTGA
AACACGTTAATGTCGACACATAAGTAATATTGCCATATTGCCATGCTAAA
CCCCCCTTCTCCCCCCAACTTATGCCTTCCAGTATCCAAGGAAACCCCCA
TCGGTGATGATTCTGACCCCGAACGGGCGATTCGCGTGCTCGAGGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100225:504..801+

>mRNA_L-digitata_M_contig100225.1.1 ID=mRNA_L-digitata_M_contig100225.1.1|Name=mRNA_L-digitata_M_contig100225.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=180bp|location=Sequence derived from alignment at L-digitata_M_contig100225:504..801+ (Laminaria digitata LdigPH10_18mv male)
CAGGCGGCACCTCTGGAAACCAACATCCTGGAGTGGCACTACGTCATCAC
CGGCACGAAGGGGTCTCCATACGAAGGAGGCCACTACCACGGAAAGCTCA
AGTTCCCCCCTGAGTATCCAAGGAAACCCCCATCGGTGATGATTCTGACC
CCGAACGGGCGATTCGCGTGCTCGAGGTAG
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