mRNA_L-digitata_M_contig100214.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100214.1.1
Unique NamemRNA_L-digitata_M_contig100214.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: A0A6H5KNN9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN9_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.830e-24
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 LARKRHEKRRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            L R +   RRL E+TVWGYFTQICDALLHMHG+RI+HRD+KPAN+ V  DG VKLGDLGLGR
Sbjct:  561 LRRTKQSGRRLDEITVWGYFTQICDALLHMHGERIIHRDIKPANVFVSRDGIVKLGDLGLGR 622          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: D7FMU9_ECTSI (Putative serine-threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.030e-23
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 LARKRHEKRRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            L R +   +RL E+TVWGYFTQICDALLHMHG+RI+HRD+KPAN+ V  DG VKLGDLGLGR
Sbjct:  260 LRRTKQAGQRLDEITVWGYFTQICDALLHMHGERIIHRDVKPANVFVSRDGIVKLGDLGLGR 321          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: A0A1S8V9M6_9FUNG (Serine/threonine-protein kinase Nek7 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8V9M6_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 3.380e-19
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   25 RRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            RR+SE T+W YF+QICDAL H+H +R+MHRD+KPAN+ +   G  KLGDLGLGR
Sbjct:   10 RRISEKTIWKYFSQICDALAHLHKRRVMHRDIKPANVFITSQGVAKLGDLGLGR 63          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: F0Y2C1_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2C1_AURAN)

HSP 1 Score: 85.5 bits (210), Expect = 1.140e-18
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   22 KRRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            K+   E  +W YF+QICDAL HMH QRI+HRDLKPAN+ + L+GTVK+GDLGLGR
Sbjct:   99 KQGFEERVIWKYFSQICDALAHMHEQRILHRDLKPANVFLTLNGTVKVGDLGLGR 153          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: A0A482R4P4_9EURY (Protein kinase domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R4P4_9EURY)

HSP 1 Score: 84.7 bits (208), Expect = 1.840e-18
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 LARKRHEKRRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            L + R    RL E  +W YF+QI DA+ HMH +RIMHRDLKPANI + L+GT+K+GDLGLGR
Sbjct:  166 LRKARERDLRLDERVIWKYFSQIADAVAHMHSKRIMHRDLKPANIFLTLNGTIKVGDLGLGR 227          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: A0A8J2WWI5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWI5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.920e-18
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    7 RKRHEKRR-LSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            RK +E+ +   E  +W YF+QICDA+ HMH +RI+HRDLKPAN+ + LDGTVK+GDLGLGR
Sbjct:   94 RKANERGKPFEERVIWKYFSQICDAITHMHSRRILHRDLKPANVFLTLDGTVKVGDLGLGR 154          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: A0A7S2C573_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C573_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.410e-17
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    7 RKRHEKR-RLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            RK  E+  R  E  +W YF QIC+A+ HMH +RIMHRDLKPANI + L+GTVK+GDLGLGR
Sbjct:  121 RKAQEREARFEERVIWRYFAQICEAIQHMHERRIMHRDLKPANIFLTLNGTVKVGDLGLGR 181          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: A0A7R9V423_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V423_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 2.260e-17
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   22 KRRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            K+ L E ++W +F QI DALL+MH QRIMHRD+KPAN+LVG +G +K+GDLGLGR
Sbjct:  138 KKTLDEPSIWMFFAQITDALLYMHQQRIMHRDIKPANVLVGANGALKIGDLGLGR 192          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: A0A814J094_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814J094_9BILA)

HSP 1 Score: 82.4 bits (202), Expect = 2.830e-17
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   22 KRRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            K+ LSE T W +F+QIC  L HMH +RIMHRD+KPANI +   GT+KLGDLGLGR
Sbjct:  116 KKLLSEKTSWKFFSQICTGLEHMHSKRIMHRDIKPANIFINAQGTIKLGDLGLGR 170          
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Match: A0A814SGC8_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814SGC8_ADIRI)

HSP 1 Score: 82.4 bits (202), Expect = 3.230e-17
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   25 RRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLDGTVKLGDLGLGR 186
            +RL+E T+W +F+QIC  L HMH +RIMHRD+KPANI V  +G V+LGDLGLGR
Sbjct:  123 KRLTEKTIWKFFSQICSGLEHMHSKRIMHRDIKPANIFVSAEGIVRLGDLGLGR 176          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100214.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNN9_9PHAE4.830e-2474.19Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FMU9_ECTSI2.030e-2372.58Putative serine-threonine protein kinase n=1 Tax=E... [more]
A0A1S8V9M6_9FUNG3.380e-1964.81Serine/threonine-protein kinase Nek7 n=1 Tax=Batra... [more]
F0Y2C1_AURAN1.140e-1867.27Protein kinase domain-containing protein (Fragment... [more]
A0A482R4P4_9EURY1.840e-1861.29Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A8J2WWI5_9STRA5.920e-1862.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2C573_9STRA1.410e-1763.93Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7R9V423_9CHLO2.260e-1765.45Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A814J094_9BILA2.830e-1765.45Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A814SGC8_ADIRI3.230e-1764.81Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100214contigL-digitata_M_contig100214:119..307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FMU9
PFAMsPkinase
Model size189
Max annot lvl2759|Eukaryota
KEGG koko:K08857,ko:K20876
KEGG TC1.I.1.1.3
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.32e-24
EggNOG OGsKOG0591@1|root,KOG0591@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size189
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.1116464-CDS-L-digitata_M_contig100214:118..3071682406605.1116464-CDS-L-digitata_M_contig100214:118..307Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100214 119..307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100214.1.1prot_L-digitata_M_contig100214.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100214 119..307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100214.1.1

>prot_L-digitata_M_contig100214.1.1 ID=prot_L-digitata_M_contig100214.1.1|Name=mRNA_L-digitata_M_contig100214.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=63bp
LARKRHEKRRLSELTVWGYFTQICDALLHMHGQRIMHRDLKPANILVGLD
GTVKLGDLGLGR*
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mRNA from alignment at L-digitata_M_contig100214:119..307-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100214.1.1 ID=mRNA_L-digitata_M_contig100214.1.1|Name=mRNA_L-digitata_M_contig100214.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig100214:119..307- (Laminaria digitata LdigPH10_18mv male)
CTCGCTCGGAAACGACACGAGAAGAGGAGACTAAGCGAGCTGACGGTGTG GGGATACTTTACCCAGATTTGCGATGCCCTGCTGCATATGCACGGCCAGA GGATCATGCACCGGGACCTTAAGCCGGCCAACATTCTCGTGGGTTTGGAC GGAACGGTTAAGCTGGGCGACCTTGGACTTGGACGGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100214:119..307-

>mRNA_L-digitata_M_contig100214.1.1 ID=mRNA_L-digitata_M_contig100214.1.1|Name=mRNA_L-digitata_M_contig100214.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=189bp|location=Sequence derived from alignment at L-digitata_M_contig100214:119..307- (Laminaria digitata LdigPH10_18mv male)
CTCGCTCGGAAACGACACGAGAAGAGGAGACTAAGCGAGCTGACGGTGTG
GGGATACTTTACCCAGATTTGCGATGCCCTGCTGCATATGCACGGCCAGA
GGATCATGCACCGGGACCTTAAGCCGGCCAACATTCTCGTGGGTTTGGAC
GGAACGGTTAAGCTGGGCGACCTTGGACTTGGACGGTGA
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