mRNA_L-digitata_M_contig100200.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A059ECM8_9PROT (Uncharacterized protein n=5 Tax=root TaxID=1 RepID=A0A059ECM8_9PROT) HSP 1 Score: 404 bits (1038), Expect = 7.720e-140 Identity = 209/216 (96.76%), Postives = 211/216 (97.69%), Query Frame = 3
Query: 291 MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTVIASDKHVISL 938
MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLAR E+GAVIHEADAQAAQVISMIE TVIA+D VISL
Sbjct: 1 MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARGESGAVIHEADAQAAQVISMIEDSTVIAADNQVISL 216
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A2E3ATP4_9PROT (Uncharacterized protein n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A2E3ATP4_9PROT) HSP 1 Score: 348 bits (894), Expect = 1.730e-117 Identity = 178/247 (72.06%), Postives = 202/247 (81.78%), Query Frame = 3
Query: 201 MADQLTGHGSRRNYLWPWLAPYPESPKCVVMSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTVIASDKHVISLH 941
MA + H RRN L P LAP P+SPKC+ M+RTICLN+ IGELPGE GRAMDRAILDVVSRCSIACGGHAGD+ SMRATLKAA+AR+VVVGAHPSYPDRQNFGRK++ M +ELE RQQVRTLASLAR QGV +DHLKPHGALYNDA+RD LAE +VR+ R+ARIRA++GPP+S L+KIAH TG DFLAEGFADR YA DGSL+ARSE GAVI AQ AQVI ++E GTV A H I L+
Sbjct: 1 MAGEHARHWCRRNNLRPRLAPDPQSPKCLGMNRTICLNAXIGELPGEAGRAMDRAILDVVSRCSIACGGHAGDEXSMRATLKAARARNVVVGAHPSYPDRQNFGRKTVAMSXEELEMSXRQQVRTLASLARLQGVTLDHLKPHGALYNDAARDSDLAEIVVRIARDARIRAIIGPPNSRLSKIAHGTGMDFLAEGFADRRYAGDGSLIARSEPGAVIEATQAQVAQVIGIVENGTVSAQGSHAIPLN 247
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A059DW94_9PROT (Uncharacterized protein n=4 Tax=Hyphomonas TaxID=85 RepID=A0A059DW94_9PROT) HSP 1 Score: 289 bits (740), Expect = 1.440e-94 Identity = 146/216 (67.59%), Postives = 177/216 (81.94%), Query Frame = 3
Query: 291 MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTVIASDKHVISL 938
MSRTICLNSDIGELPGETGRA+DRAILDVVSRCSIACGGHAGD+DSMRATLKAAKAR VV GAHPSYPD++NFGR S+ + ++LE+ LRQQVRTL+SLAR QGV +DHLKPHGALYND+++D LA+ +VR+ + RIRAV+GPP+S+L K+A G DF+AEGFADR Y+ DGSL+ R+E G+V+ Q AQV+ + E G V D +ISL
Sbjct: 1 MSRTICLNSDIGELPGETGRALDRAILDVVSRCSIACGGHAGDEDSMRATLKAAKARGVVAGAHPSYPDKKNFGRISVSLSPEDLEASLRQQVRTLSSLARLQGVVLDHLKPHGALYNDSAKDADLAQIVVRIAHQNRIRAVIGPPNSVLRKVALEAGLDFVAEGFADRQYSSDGSLVPRAEPGSVLTSVQEQVAQVLHISEEGCVTTRDGSMISL 216
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A062U741_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas beringensis TaxID=1280946 RepID=A0A062U741_9PROT) HSP 1 Score: 258 bits (660), Expect = 1.820e-82 Identity = 127/206 (61.65%), Postives = 160/206 (77.67%), Query Frame = 3
Query: 291 MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTV 908
M+RTICLN+DIGELPG+ GRAMDRAILDVVSRC+IACGGHAGD+ SM TLKAAKAR+V+ GAHPSYPD++NFGR SM M ++L+ LRQQVRT S+AR G ++HLKPHGALYNDA+RD LA + + REAR++ ++GPPDS L++ A +L EGFADR Y DGSL+ RSEAGAV+ + Q +QV+ ++ G+V
Sbjct: 1 MTRTICLNADIGELPGQNGRAMDRAILDVVSRCNIACGGHAGDETSMSQTLKAAKARNVIAGAHPSYPDQENFGRVSMSMSSEDLKDTLRQQVRTFLSIARDIGAPVEHLKPHGALYNDAARDAGLASIVAAVAREARLKVLVGPPDSELSRAAAEFRLSYLPEGFADRRYQVDGSLMPRSEAGAVLSDIKDQISQVMEFVDNGSV 206
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A062U3Q4_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas pacifica TaxID=1280941 RepID=A0A062U3Q4_9PROT) HSP 1 Score: 251 bits (641), Expect = 1.360e-79 Identity = 126/206 (61.17%), Postives = 156/206 (75.73%), Query Frame = 3
Query: 291 MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTV 908
M+RTICLN+DIGELPG GRAMDRAILDVVSRC+IACGGHAGD+ SM TLKAAKAR+V+ GAHPSYPD++NFGR SM MP +EL+ LRQQVRT +A G ++HLKPHGALYNDA+R+ LA I + REAR+ ++GPP+S L++ A ++L EGFADR Y DGSL RSE GAV+ + Q AQV+ ++ G+V
Sbjct: 1 MTRTICLNADIGELPGHNGRAMDRAILDVVSRCNIACGGHAGDETSMGQTLKAAKARNVIAGAHPSYPDKENFGRLSMAMPAEELKDTLRQQVRTFLRIALDIGAPVEHLKPHGALYNDAARNAGLASIIAAVAREARLNVLVGPPNSELSRAAAEFHLNYLPEGFADRRYQADGSLTPRSEPGAVLKDIKDQIAQVLEFVDQGSV 206
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A059FW14_9PROT (LamB/YcsF family protein n=2 Tax=Hyphomonas johnsonii TaxID=81031 RepID=A0A059FW14_9PROT) HSP 1 Score: 234 bits (596), Expect = 9.110e-73 Identity = 120/218 (55.05%), Postives = 153/218 (70.18%), Query Frame = 3
Query: 285 VVMSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTVIASDKHVISL 938
+ +++ ICLN+DIGE+PGE GRA+DRA+LDVV+RCSIA GGHAGD SM AT+KAA AR+V++GAHPSYPDR+ FGR++M M D L L +QVR LAS+AR +G A+ HLKPHGALYN A+RD +A +V T +RI ++GPP S LA A +G FLAEGFADRTY G L R+E GAVI + Q + ++E GTV + L
Sbjct: 1 MAVTKAICLNADIGEMPGEPGRALDRAMLDVVTRCSIASGGHAGDAQSMAATVKAADARNVLIGAHPSYPDREGFGRRAMAMDADALRDSLLEQVRALASIARERGQALSHLKPHGALYNTAARDAGIARVVVEATLRSRIDLLIGPPHSKLAAAAADSGLPFLAEGFADRTYEASGDLTPRTEPGAVIETDADRIRQALQIVETGTVTTRTGETLQL 218
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A0F2QFD5_9PROT (Uncharacterized protein n=1 Tax=Hyphomonadaceae bacterium BRH_c29 TaxID=1629720 RepID=A0A0F2QFD5_9PROT) HSP 1 Score: 228 bits (581), Expect = 1.420e-70 Identity = 113/208 (54.33%), Postives = 150/208 (72.12%), Query Frame = 3
Query: 291 MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTVIA 914
M ICLN+D+GELPG+ GRA+DRAILDVV+RC+IACGGHAGD++SM AT++AA AR+V +GAHPSYPDR+ FGR + ELE L QVR L ++A QG ++ HLKPHG+LYNDA++D +LA +V + + + ++GPPDS L + G F+AE FADR+Y DGSL R+ GAV+ + Q AQV+S++E G VIA
Sbjct: 1 MRTRICLNADVGELPGDNGRALDRAILDVVTRCNIACGGHAGDEESMAATIQAAVARNVRIGAHPSYPDREGFGRTRPSVSDQELEQSLLSQVRALKTIAHRQGASVAHLKPHGSLYNDAAKDESLAGIVVSICQRVGVPELLGPPDSALERKTREAGLVFVAEAFADRSYEADGSLTPRALPGAVMADEAMQLAQVVSIVEAGEVIA 208
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A059G643_9PROT (LamB/YcsF family protein n=1 Tax=Hyphomonas oceanitis SCH89 TaxID=1280953 RepID=A0A059G643_9PROT) HSP 1 Score: 228 bits (580), Expect = 2.220e-70 Identity = 118/216 (54.63%), Postives = 149/216 (68.98%), Query Frame = 3
Query: 291 MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTVIASDKHVISL 938
M +TICLN+DIGELPG RA+DRAILDVVSRCSIACGGHAGD SM AT+KAA AR V++GAHPSYPDR+ FGRK M M +++L + L QQVR LA++ R +G ++ HLKPHGALYN A+ D +A IV +T ++RI ++GPP S L A G D+L+EGFADR Y G+L+ RS GAV+ + Q + + G V A I L
Sbjct: 1 MKKTICLNADIGELPGSNARALDRAILDVVSRCSIACGGHAGDQTSMAATVKAAYARGVLMGAHPSYPDREGFGRKPMAMSREDLSATLSQQVRALAAITRERGASLSHLKPHGALYNTAAGDEGIARTIVDVTIQSRIPLLIGPPRSCLESAASDAGLDYLSEGFADRAYETSGALMPRSTTGAVLETDAERIRQAVQIAATGKVSARTGETIDL 216
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A0F2RCN9_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas sp. BRH_c22 TaxID=1629710 RepID=A0A0F2RCN9_9PROT) HSP 1 Score: 228 bits (580), Expect = 2.220e-70 Identity = 120/216 (55.56%), Postives = 150/216 (69.44%), Query Frame = 3
Query: 291 MSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTVIASDKHVISL 938
M R ICLN+DIGELPG+ GRA+DRAILDVV+RCSIA GGHAGD +SM AT+KAA AR+V++GAHPSYPDR+ FGR +M + + +L L QQVR LA++AR +GV I HLKPHGALYN A+RD A+ IV +T ++RI ++GPP S LA AH G +LAEGFADR Y G L R+ GAVI + + Q + + G V I L
Sbjct: 1 MIREICLNADIGELPGDNGRALDRAILDVVTRCSIASGGHAGDQESMAATVKAADARNVLIGAHPSYPDREGFGRNAMTLSRADLSITLLQQVRALAAIARERGVPIAHLKPHGALYNTAARDEDTAQTIVDVTIQSRIPLLIGPPTSRLALAAHHAGLPYLAEGFADRAYEASGELTPRTMEGAVIAADEDRVRQAVQIASTGQVTTRTGETIQL 216
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Match: A0A069E1Q3_9PROT (LamB/YcsF family protein n=4 Tax=Hyphomonas TaxID=85 RepID=A0A069E1Q3_9PROT) HSP 1 Score: 224 bits (572), Expect = 3.460e-69 Identity = 115/210 (54.76%), Postives = 145/210 (69.05%), Query Frame = 3
Query: 285 VVMSRTICLNSDIGELPGETGRAMDRAILDVVSRCSIACGGHAGDDDSMRATLKAAKARHVVVGAHPSYPDRQNFGRKSMKMPQDELESLLRQQVRTLASLARGQGVAIDHLKPHGALYNDASRDPTLAEFIVRLTREARIRAVMGPPDSMLAKIAHATGTDFLAEGFADRTYARDGSLLARSEAGAVIHEADAQAAQVISMIEGGTVIA 914
+ MS ICLN+D+GELPG+ GRA+DRAILDVV+RC+IACGGHAGDD+SM AT+ AA AR V+ GAHPSYPDR+ FGR + + LE L QVRTL ++A GQG + HLKPHG+LYNDA++D +LAE +V + I ++GPPDS L A G F AE FADR+Y DG L R+ GAV+ + Q Q +S+I G V A
Sbjct: 1 MAMSTRICLNADVGELPGDNGRALDRAILDVVTRCNIACGGHAGDDESMAATIHAAVARKVLTGAHPSYPDREGFGRARPNISNEALEQSLLSQVRTLKAIAHGQGATVAHLKPHGSLYNDAAKDESLAEMVVSICLRLGIPELLGPPDSALELKARNVGLVFAAEAFADRSYEADGHLTPRALPGAVMTDEAKQLEQALSIIVAGEVSA 210 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100200.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100200.1.1 >prot_L-digitata_M_contig100200.1.1 ID=prot_L-digitata_M_contig100200.1.1|Name=mRNA_L-digitata_M_contig100200.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=247bp MADQLTGHGSRRNYLWPWLAPYPESPKCVVMSRTICLNSDIGELPGETGRback to top mRNA from alignment at L-digitata_M_contig100200:2..942+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100200.1.1 ID=mRNA_L-digitata_M_contig100200.1.1|Name=mRNA_L-digitata_M_contig100200.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=941bp|location=Sequence derived from alignment at L-digitata_M_contig100200:2..942+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100200:2..942+ >mRNA_L-digitata_M_contig100200.1.1 ID=mRNA_L-digitata_M_contig100200.1.1|Name=mRNA_L-digitata_M_contig100200.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=741bp|location=Sequence derived from alignment at L-digitata_M_contig100200:2..942+ (Laminaria digitata LdigPH10_18mv male)back to top |