mRNA_L-digitata_M_contig10019.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10019.3.1 vs. uniprot
Match: A0A6H5KJR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR7_9PHAE) HSP 1 Score: 311 bits (797), Expect = 1.690e-87 Identity = 340/864 (39.35%), Postives = 396/864 (45.83%), Query Frame = 1
Query: 1 RASVGRSNKLSVFDAMADLDLAVGQEEWNDFADESTAPPRSPTXXXXXXXXXXXXXXXXXXXALPEATDSLAAAPGEELVETVGVASTVDGSATVAAAKETEGIDGAEPTPPE----------------PFIAGEGWPFSAGEG-VEAGAEAVVGGGSGGADGAVKAESEDDDWGDFEDAGAGGGQRPSDQPRDGEETEGK--REGNSVPLPDPEN--------SEDEWGGFVDVPVALALAEEEPATTGGAGSGXXXXXXXXXXXXXPFAAISPPXXXSRPQPLQDGSGFGETSSPAGGGDEGGEGTEAPQVSTQHIGEALFGTMGGSGXXXXXXXXXXXXXVAGLPLSLRDLRDALAGRGRLEEAVEVQRRMELPT-PTGTAGAGVGFTGETPDASNFSGEKGDEEGDGGG---DGDLERWRAAA--ELPPAPTLEQLAGAVSEVDAARGEKFRERFVAGRPPVEEEALAGGGAV-SLGRAVKRQRAARRAVSLSAALHLPAAAEAVAAGGGGGAEAEEG---GL---GGAEGVYHGVLDIDLGLGSTGGRLPPSLSDWASMVAYVARVAEDGLDALKEGGSVAGAGRS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTGLXXXXXXXKGDGTDGDVVREVALSARFVAFSRGLREAVRVCRMLQAAAEDG--LETVDGFAAMERAWAEFRRRARQAAALRWPHGADGDGDXXXXXXXXXATEYYPDVFGPEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSGS-VKAVREAGVGRAPAG--SALCAVCLQPLEVFGGGGRPA---------PDVVEYCGVRYLAAAVNLWVNVVNKPPPGPLP 2427
RAS R+ KLSVFD MADLDLAVGQE+WNDFADE+TAPPRSPT XXXXXXXXXX A ++ A + G +D V P + +G P + EG V A A A + G+ A A A+ +DD+WGDF DA A G Q G E E RE N+ ++EWG F D P A A EE G A S PFA I P X G T+ E EA ++ ++ G XXXXXXXXX GLPLSLR LRDALA +GRLEEAVEVQRRMELP+ P T V ++ E A + + DGGG D DLERWR AA +L P PT+E LA +S DAARGEKFRERFV GRPPVEEEA +L AVKRQR+ARRAV L + L A A G + E+G GL G E L++DLGL + R PPSL+DWA+M++YV +A G++AL GG A GL DG G V REVA S F +F RGLREA++VCRMLQA+AED L+ VDGFAAMERAWAE RR AR+A D P VFG ED S V A+REA V AP SALC V LQPL VF GG P VVEYCGVRYLA A NLWVNV++KPPP P P
Sbjct: 390 RASSSRT-KLSVFDEMADLDLAVGQEDWNDFADETTAPPRSPTPSXXXXXXXXXXATEEVVKAAVVEEPAIDDAICNSDADIRGEPRPLDQDPGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHAWPGLEQQGMPLFSSEGAVAASAHASIADGAAPAAAAEGAQGQDDEWGDFLDATAEGEGTTGQQHLAGPEGEATAVREDNAATXXXXXXXXXXXXXXGDEEWGTFADAPEAAA-GEEAGLAIGDASSTGGSREAPPEEAVDPFADIEPTTPXXXXXXXXX---XGATA----------EDEEAGRLGSEEX--------XGXXXXXXXXXXXTTVTAPGLPLSLRGLRDALAKQGRLEEAVEVQRRMELPSSPPRTID--VPYSPEDVTAEDANAHA-----DGGGEAEDADLERWRGAAAGDLRPFPTVEDLAATMSAADAARGEKFRERFVRGRPPVEEEAXXXXXXXXALDVAVKRQRSARRAVCLLSMLD----AAGTAGDGAADKDVEDGRDRGLTSGGAVEKEEEDKLELDLGLDTRRARSPPSLADWAAMMSYVTSMAGKGIEALAGGGXXXXXXSDRAAATPASLTRPSSPFSRPTTEREGADCRAEIDSAGLPPDAAALASDG--GAVRREVARSQEFESFCRGLREAIKVCRMLQASAEDACCLQGVDGFAAMERAWAELRRSAREAXXXXXXXXXXXXXDL-------------PSVFGVEDGEEGVCMEKEAQGVGGSPGAASGLVGGKGERTAVGGGVAPAGSSIVAAIREACVETAPPAEDSALCGVSLQPLAVFSGGAXXXXXXXXXVEPPGVVEYCGVRYLACAFNLWVNVLDKPPPRPSP 1204
BLAST of mRNA_L-digitata_M_contig10019.3.1 vs. uniprot
Match: D8LT09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT09_ECTSI) HSP 1 Score: 282 bits (722), Expect = 1.160e-80 Identity = 225/516 (43.60%), Postives = 264/516 (51.16%), Query Frame = 1
Query: 955 GLPLSLRDLRDALAGRGRLEEAVEVQRRMELPTPTGTAGAGVGFTGETPDASNFSGEKGDEEGDGGGDGDLERWRAAA--ELPPAPTLEQLAGAVSEVDAARGEKFRERFVAGRPPVEEEALAGGGAVS-LGRAVKRQRAARRAVSLSAALHLPAAAEAVAAGGGGGAEAE-----EGGL---GGAEGVYHGVLDIDLGLGSTGGRLPPSLSDWASMVAYVARVAEDGLDALKEGG--SVAGAGRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTGLXXXXXXXKGDGTDGDVVREVALSARFVAFSRGLREAVRVCRMLQAAAEDG--LETVDGFAAMERAWAEFRRRARQAAALRWPHGADGDGDXXXXXXXXXATEYYPDVFGPEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVL-SGSVKAVREAGVGRAPAG--SALCAVCLQPLEVFGGG-------GRPAPDVVEYCGVRYLAAAVNLWVNVVNKPPPGPLP 2427
GLPLSLR LRDALA RGRLEEAVEVQRRMELP+ V ++ E A + + D DLERWRA A +L P PT+E+LA +S DAARGEKFRERFV GRPPVEEE LG AV+RQR+ARRAV L + L +A G G A+ + +GGL GG E L++DLGL + R PPSL+DWA+M++YV +A G++AL GG S +G+ R+A G+ DG V REVA S +F RGLREAV+VCRMLQA+AEDG L+ VDGFAAMERAWAE RR AR+A GD P VFG ED S SV A+REA V P SALC V LQPL VF GG G P VVEYCGVRYLA A+NLWVNV++KPPPGP P
Sbjct: 181 GLPLSLRGLRDALAKRGRLEEAVEVQRRMELPSTPPPRAIDVPYSPEDVTADDDANXXXXXXXXXXXDADLERWRAVAAEDLRPFPTVEELAATMSAADAARGEKFRERFVRGRPPVEEEXXXXXXXXXXLGVAVRRQRSARRAVCLLSML------DAAGTAGDGAADKDLEDGRDGGLTSGGGDEKEEQDKLELDLGLDTRRARSPPSLADWAAMMSYVTSMAARGIEALAGGGAGSRSGSDRAAATPASPTRPSSPFTRPTAEREGADCRAEIDS-AGVPPDADALASDGVA--VRREVARSQELESFCRGLREAVKVCRMLQASAEDGCCLQGVDGFAAMERAWAELRRSAREAXXXXXXXXXXGD---------------LPSVFGVEDGEEGVCMGKEAQGVGGSPGAASGLVGGKDERTAVGGGVAPAGSSSVAAIREACVETPPPAEDSALCGVSLQPLAVFSGGAGXXXXSGVEPPGVVEYCGVRYLACAINLWVNVLDKPPPGPSP 672 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10019.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10019.3.1 >prot_L-digitata_M_contig10019.3.1 ID=prot_L-digitata_M_contig10019.3.1|Name=mRNA_L-digitata_M_contig10019.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=815bp RASVGRSNKLSVFDAMADLDLAVGQEEWNDFADESTAPPRSPTPPPPPSPback to top mRNA from alignment at L-digitata_M_contig10019:6012..8741- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10019.3.1 ID=mRNA_L-digitata_M_contig10019.3.1|Name=mRNA_L-digitata_M_contig10019.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2730bp|location=Sequence derived from alignment at L-digitata_M_contig10019:6012..8741- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10019:6012..8741- >mRNA_L-digitata_M_contig10019.3.1 ID=mRNA_L-digitata_M_contig10019.3.1|Name=mRNA_L-digitata_M_contig10019.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=2445bp|location=Sequence derived from alignment at L-digitata_M_contig10019:6012..8741- (Laminaria digitata LdigPH10_18mv male)back to top |