mRNA_L-digitata_M_contig10018.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10018.1.1
Unique NamemRNA_L-digitata_M_contig10018.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10018.1.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 3.260e-51
Identity = 90/164 (54.88%), Postives = 119/164 (72.56%), Query Frame = 1 
Query:    1 AFSHLRRIPSVVGSIQTVYRCTALAIALSCCSAPFWNDVRVTGAYFWVTYSGNARFARWISLSFLTTQAVAGFLMALILIFNVTGPRPASLIVCCRTSKRVKVYFVLTILRTCVYLYNGAVLFVDEFAVFRVGKKEMVMIGWCSKYVNVIADTFVLFSAFQEID 492
            +F  LRR+P+++GS +    C  LAI  +  SA FWN V +TG YFWVT +GN    RWISLSF  TQ VAG LMAL ++F V+G R +SL VCC+TS+RVK +F+LTI  T VYLYNG VL  DEF+ F++ K+ +V+IGWCS+YV+VIADT ++F AF  ++
Sbjct:   95 SFVKLRRVPTMIGSTRAACVCLVLAILATVLSAVFWNGVLITGGYFWVTNTGNESHGRWISLSFGATQTVAGMLMALAVLFTVSGERFSSLKVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDFKISKR-LVIIGWCSRYVHVIADTGIIFGAFYALE 257
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BLAST of mRNA_L-digitata_M_contig10018.1.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.320e-48
Identity = 86/164 (52.44%), Postives = 116/164 (70.73%), Query Frame = 1 
Query:    1 AFSHLRRIPSVVGSIQTVYRCTALAIALSCCSAPFWNDVRVTGAYFWVTYSGNARFARWISLSFLTTQAVAGFLMALILIFNVTGPRPASLIVCCRTSKRVKVYFVLTILRTCVYLYNGAVLFVDEFAVFRVGKKEMVMIGWCSKYVNVIADTFVLFSAFQEID 492
            +F  LRR+P+++GS +    C  LA+  +  SA FWN V +TG YFWVT + N    RWISLSF  TQ VAG LMAL ++F +TG R +SL VCC+TS+RVK +F+LTI  T VYLYNG VL  DEF+ F++  + +V+IGWCS+Y +VIADT ++F AF  ++
Sbjct:   95 SFVTLRRVPTMIGSTRAACVCVVLAVLATVLSAVFWNGVLITGGYFWVTNTSNESHGRWISLSFGATQTVAGILMALTVLFTMTGERFSSLRVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDFKISTR-LVIIGWCSRYAHVIADTGIIFGAFYALE 257
[Close]
BLAST of mRNA_L-digitata_M_contig10018.1.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 7.210e-32
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:    1 AFSHLRRIPSVVGSIQTVYRCTALAIALSCCSAPFWNDVRVTGAYFWVTYSGNARFARWISLSFLTTQAVAGFLMALILIFNVTGPRPASLIVCCRTSKRVK 306
            AFS +RR+P V+GS + ++ C  +A+ L+  SAPFWNDV VTG+YFW+T   +   ARWISLSF+TTQ +AG LMAL L+F  TG R  SL+VC RTSKR+K
Sbjct:   70 AFSKMRRVPRVIGSSRVIWSCVFVAMGLTLLSAPFWNDVLVTGSYFWITNRNDPNLARWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMK 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUL6_ECTSI3.260e-5154.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRD9_9PHAE1.320e-4852.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL8_ECTSI7.210e-3257.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10018contigL-digitata_M_contig10018:4290..9293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size492
Hectar predicted targeting categorysignal anchor
Exons4
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.3353548-CDS-L-digitata_M_contig10018:4289..44031682406604.3353548-CDS-L-digitata_M_contig10018:4289..4403Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10018 4290..4403 -
1682406604.3457234-CDS-L-digitata_M_contig10018:4964..50321682406604.3457234-CDS-L-digitata_M_contig10018:4964..5032Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10018 4965..5032 -
1682406604.3542073-CDS-L-digitata_M_contig10018:7356..75071682406604.3542073-CDS-L-digitata_M_contig10018:7356..7507Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10018 7357..7507 -
1682406604.3635988-CDS-L-digitata_M_contig10018:9134..92931682406604.3635988-CDS-L-digitata_M_contig10018:9134..9293Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10018 9135..9293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10018.1.1prot_L-digitata_M_contig10018.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10018 4290..9293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10018.1.1

>prot_L-digitata_M_contig10018.1.1 ID=prot_L-digitata_M_contig10018.1.1|Name=mRNA_L-digitata_M_contig10018.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=164bp
AFSHLRRIPSVVGSIQTVYRCTALAIALSCCSAPFWNDVRVTGAYFWVTY
SGNARFARWISLSFLTTQAVAGFLMALILIFNVTGPRPASLIVCCRTSKR
VKVYFVLTILRTCVYLYNGAVLFVDEFAVFRVGKKEMVMIGWCSKYVNVI
ADTFVLFSAFQEID
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mRNA from alignment at L-digitata_M_contig10018:4290..9293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10018.1.1 ID=mRNA_L-digitata_M_contig10018.1.1|Name=mRNA_L-digitata_M_contig10018.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=5004bp|location=Sequence derived from alignment at L-digitata_M_contig10018:4290..9293- (Laminaria digitata LdigPH10_18mv male)
GCGTTTTCCCACCTTCGAAGAATCCCCAGCGTGGTCGGCTCTATCCAAAC
CGTCTACCGCTGCACGGCTCTGGCGATCGCCTTGTCCTGCTGCTCCGCCC
CGTTTTGGAACGATGTCCGTGTCACGGGGGCGTATTTCTGGGTGACCTAC
AGCGGCAACGTAAGATGTTTCTACAACGGTCGACAGCTAGACGCTCAGTG
ATGGCTGTAGGCGCGCGCGAGGTAGGGGTACTCAATATCATACATGGCCG
TAGTCGTATGACCATACTCCCTAGCTAGAGGGGGGGGGGGGTACTCAGTA
TCATGCGTGGCCGTAGTCATGGCCATATACCCTTGCATCCCTACAATGCC
GGGACGGAGCGGCGGGGTGCACTCTTTACCATGCGTGGCCGAAATCGTAT
GGCCGTACTGAAGCATACCCTTGCCTGCCTACATTGCCGGGACGAAGCTC
GAGGGAGGTCGCGTCTATATACGTGCTACATGTTGAGGGGGTACCTTCGG
GGCCATCATTACCTGATCGACGGACCCGTGGCACGATAGCGACGCGTTCT
ACGACAGAGGTAGCACATGTCGGGGGAAAATTTTTCTGATTGACCGGGCT
CCTTAACCCAATATTGTTTGAATCTTGTTACTTTATTCTTAAAATAATGT
TTTGGTTTTTTTAACTTCGTAAGCCAAGGGAGTTTTCTTCGGCTTACGTG
TAGTATGCGGTTTCTCCCAAAGTCCGTCTTTGGACGAGGTATGCCGTTCC
TCACGCGAGGAGCTTCAAAACATGTTAGATGCGTCCCTACCGTGGCATGC
GTCTAACGTTTTCGTAGTCTCCTCACCTGAGTCGCAGCACTATATACTCT
ATCTAGATACATCACCCAAAAATCGATTTTGAGAAGGAAAAACAAAAATG
CTCAGCCCGACACGACAGACACCCCATGGGTTAGGAATATTGAAGGACAC
ATCGGATCTCCAAAGATATATTCCTGCGAAGCGCCGTATCGCGTTGTACG
ATAGAGGTAGCACATTTTGAGAGGAAATAATCTGGCTGACGGGGGGCTCC
TTAGCCCAATATCGATCGAATCTCGTTAGTTTTTTGTTTTCAATAACGTT
TATTTTGTACCTTAAGCCACGGGATTTTTTCGTCGGCTTAAGTGTATACT
TCGTATACTTTTGTTTCCGAACTTCTGTTTTTGGACGATTTTTTTTAAAG
CACCTCAAGTGAGGAGCCTCAGAAAATTTAGGCTTCACCACTACCGTGGC
ATGCGTCCCGTACCTTCGCATAGCTCCACTTACTTGCGTTGTTTTTCGTA
AGACGCATGCTACTGCAGCGACGCACCTAACATTTTATGAGGCTCCTTCC
TCAACTGCATCACTTGAGGAACTCCATATGTACCTCGTCCTAAAAAACGA
GCTTTGGGAGAAACGCGTACACGCCTAAGCCGACGACAAAAATGCCAGGG
CTTAGGAATAAAACTAAATATATATATATTTTAATCGATACTAAAAATAG
AGCTTTGAGAAAACGCGTGCGCCAAGGCCGACGACAAAAATGCCAGGGCT
TAGGTATAAAACAAAATATATGTATCTGGTATATTTTTAATCGATACTTA
AATAGTATTGGGTTAAGGAACCCGGTCAGCCTGAAAATGTGCTACCTTTA
TCGTATCTCTATCGCAGCACGCGTCGGCAGGTAATTCAAGATGGATTGGC
CTGTCGTTCCCCACCATACCCCCCTTCCCTTCCCTTCCCTTCCCTCTCTT
TCCCTCCCCTTCCCTCGTCGCCCTTTTCGTTTTCAGGCCCGCTTCGCGCG
CTGGATTAGCCTGTCGTTCCTCACCACGCAGGCGGTAGCCGGGTTTCTGA
TGGCGTTGATTCTCATCTTTAACGTCACGGGCCCCAGGCCTGCGAGCCTG
ATAGTGTGCTGCAGGACAAGCAAGAGGGTCAAAGTCTGTGAGTGACCACG
GCTACGGTAGGGGGGGGGGGGGACTCCTTTTTCAGTACCTACAAGTAGAA
TCGACGCATGTCCCGCCATCGACGCCATATATTTAAGATGTTATTGAGGG
GGACCATAGTAAATAGGAGCAAATATGATTAGCAATAATAATGTAGTATT
ATCTGGTAGGTTTTTGTGCAGATCGTGGGCCCTATTTACTATGGCCCTCC
GCAATAGTCTGTTCGGCTACTGGTAAAAAGGTTACCATTTCACCTACCCG
AACGAAGCCGTACAACATTTACTCGAAATACGGTACGTATCGATGATATG
TTATTTTGGCTCAGCGAGACGAGACTCTCGACGGCAGCGCATGTCGCGAA
ACCGAAAAGCTCGGGCGAAATCGATATAAGACTGCAATTAAATTGGGTGT
GGGTGGCCACTCGCAAGAGACGCGTGCCACGGTAGTGATGCTCCTATTAT
ACTATTTTATGAGGATCCTTACTTGAGGAGCTCCATACCTCGTCCAAAAA
CAGACTTTGGGAAACGCGTACGCCTAAGCCGATGACAAATCCCATGGCTT
ATGTGTAAAAAAAAAAAAAGCGGACTTTAGAAAACCGCGTACGCCTAAGC
CGACGACAAATCCCATGGCTTAGAGGTGCAAATATTTTTTTTTTGAACAA
ACAAACGAGATTCTAACATTATTGGGTTAGGGAGTCCGGCCAGTCAGAAA
CATGTTTCCCAAACAATGTGCCACGTCTACCGCAGAACGCGTCGCGAGTG
GCTCCGAGAAGCTGGAAACAGAAGACCTGTAGAAGTGAACCCCCCCCCAC
CGTAGCCTTGCTTCGTCTCGAAAGGGATGCGTTATCTATGGCCAAAATGA
CTACTAGGTAAGGCCAGCAAGAAATTACAGCATGGGCCCGGCAACAAGAA
ACACCAAATGGTATTAATAGCAAGCCTTAACGTTAGGTTCTTATTGTGAC
TCCTTGTTGAAACTACCTTGAGCATAAATAGGCTATTATACAGGATGTCG
TGTAGCGCTCGCGTCTGACTGAGCAGTTTTTCTTAATCCTTTTTTCTTAG
CATCCTCTAAAACGTGAGTTCGTTTTGTTCTTATTGGGTTCTTTCTTATT
CGTGGGCCTATACTACTGTAGTTCGCCCCCCCCCCCCCCCCCCCCCCCCC
CCCTCGCGTTTCTTGTGTGTGGTATGATGCGGGTGCGACGCGTGGAGCGT
GNNNNNNNNNNGGCATAACGTTGTGGGTATAATGTGCAACGTTCGGCATC
GAAGCTTCCACCGGACGGAGCAATCCCACGGTAGGGGGTGGAGCCACTTT
TCCTGAGCTCCTCGCATGAGGAGCTCATTATCTCACCCGAAACATGACTC
CGAAGAAATTTGTTCGCGCAACCCGACCAATGTTTCTATGCGCGAGCCCT
AAAACAAGTGTTATACTCGTAAGATGTGATACCAAGACCGGTAGTTACTT
ATTTTGAGGAGCTAAACCGGCCAGACAATAATATCGAGGCAAAAACGTGG
TACCCCTACCCGCGGGATCGCTCACTGCTAAGGGGAGGGTCGAGAGTCAT
GCATGCGACCGTACGAGTAGAGGGGACGGGTGCTACGATGGAGGTATACT
ATTAATAGCACATTTTGATAAAAAAAAACATTTCTGATTGACGGGGGCTC
CTTAACCCGATATTGTTGGAAATCTCGTTTTATTATGTTGTCGACATTTT
CATTTTTTTTGTGCATGTGCACGTGAGCCATGGGATGTTTCGTACGCGTT
TCCCCAAAGTCCGGTTTCCGACGAGCTTATGGAGCTCCTCACGTGAAGGG
CCTAAGCCAATGTTAGGGGCACCCCAACCGTAGCATTATGCGTCAGGGGT
AGCACGTTGTCTGCCGAAATATTTGTGACTGGTGGATTTTGTTAAGCGAG
GAGCCACCCAGCATCCCAGTCTGTACACCTATGTAGGCCATAGGATTGTC
CATCGGTTTATGCCTATACGTTATTTCAAAACTCGGTTGTGGGGTGAGGT
ATTGAGCTATGCACCTTCGGATTCGAGTGACGTTTCCCCTTTTGGATGTC
TAGTTCCTCAGCTGCTGTTGTGAGACGCTGTGCAGGATCTGCGTAGTACA
GATCGAACCCAGAACACATGTGCTAGATTGCGCCGACGATACGGCTCCCA
CCCAGGCAACATGAAACTATTTAATACAAGCTAGGTATTATATCTCCCTT
GAAATATCTAGATGACCAAGTGGGAATCGACGATCTGTCCGAGGTGTTAA
ATATGTATTTAACCCGTTTTCGTCGCTGTGACCCTCTGCATGTCTCCTTG
GTGCTCGTCAGACTTTGTCTTGACGATACTCCGGACGTGCGTCTACCTCT
ACAACGGCGCCGTCCTATTCGTCGACGAGGTACGCTATCGTTGGAGGTGG
TGGTGGTGGTGGTGGTGGCGGTGATGACGGTGACGGTGGTGATGGTGGTG
GTAGTGGTGGTGGTGGTGGAGGTGGTGGTGGTGGTGGTGGTGGCGGTGGT
GGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGTTGTGGTTG
TGGTGGTGGTGGTTGTTGTGGTTGTGGTGGTACTTGTGGTTGTGGTGGTT
GTAGTGGTGGTTGTGGTGGTACTGGTGATAGTGGTGGTAGCGGTGGTACT
GGTGATAGTGGTGATGGTGGTGATAGCGGTGGTGGTTGTTGTGGTGCTGT
TGGTGTCGTCGTTGTCGCTATTGTTGTGGCCGTTTTTGTTGCTGCTGCTG
ATGTTGAAAGCATTGCTCTTCGCCATTTGCACGACCCCGCCCCCCCCACT
GACCCCACTGCGGCCGTAATAGCTTGCCGTATTGAACCCACGCCCTCCCC
ACTCCGCGGCTGCCGGAGAAACTCACGACACCCCGGCTCCCCCCGCCCCC
TGCCCCCCCGTCACCTCCCCCACATCCACCACAGCCGTAGTTTGCCGTTT
TCAGGGTGGGCAAGAAAGAGATGGTGATGATCGGATGGTGCTCGAAATAC
GTGAACGTCATCGCGGACACATTCGTCCTTTTCAGTGCTTTCCAGGAAAT
CGAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10018:4290..9293-

>mRNA_L-digitata_M_contig10018.1.1 ID=mRNA_L-digitata_M_contig10018.1.1|Name=mRNA_L-digitata_M_contig10018.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=492bp|location=Sequence derived from alignment at L-digitata_M_contig10018:4290..9293- (Laminaria digitata LdigPH10_18mv male)
GCGTTTTCCCACCTTCGAAGAATCCCCAGCGTGGTCGGCTCTATCCAAAC
CGTCTACCGCTGCACGGCTCTGGCGATCGCCTTGTCCTGCTGCTCCGCCC
CGTTTTGGAACGATGTCCGTGTCACGGGGGCGTATTTCTGGGTGACCTAC
AGCGGCAACGCCCGCTTCGCGCGCTGGATTAGCCTGTCGTTCCTCACCAC
GCAGGCGGTAGCCGGGTTTCTGATGGCGTTGATTCTCATCTTTAACGTCA
CGGGCCCCAGGCCTGCGAGCCTGATAGTGTGCTGCAGGACAAGCAAGAGG
GTCAAAGTCTACTTTGTCTTGACGATACTCCGGACGTGCGTCTACCTCTA
CAACGGCGCCGTCCTATTCGTCGACGAGTTTGCCGTTTTCAGGGTGGGCA
AGAAAGAGATGGTGATGATCGGATGGTGCTCGAAATACGTGAACGTCATC
GCGGACACATTCGTCCTTTTCAGTGCTTTCCAGGAAATCGAC
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