mRNA_L-digitata_M_contig100108.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE) HSP 1 Score: 230 bits (587), Expect = 5.410e-72 Identity = 105/152 (69.08%), Postives = 126/152 (82.89%), Query Frame = 1
Query: 1 GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGLSESFCGPDVGSDLPADPLGDKEVVQNDVPLARLMHSAKQYARMMDSGLPCTPVHNGVERRKF 456
GYHRYLRRLLSSYCASP+LAHS+LLEFN+RWNVRMAV N GL +EVG F+DQ+E EII+RDTASWYPD+P+F +WVSALDVADTGERSGLS+S GP G D P D + ++ Q+ +P+ +L HSAK+YA M+ G+PCTPVH G ERRKF
Sbjct: 68 GYHRYLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTASWYPDNPLFPEWVSALDVADTGERSGLSQSMWGPASGGDAPGDLVDEQASPQHAIPMPKLTHSAKKYAETMNIGMPCTPVHTGAERRKF 219
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE) HSP 1 Score: 230 bits (587), Expect = 9.770e-71 Identity = 106/155 (68.39%), Postives = 131/155 (84.52%), Query Frame = 1
Query: 1 GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGLSESFCGPDVGSDLPADP---LGDKEVVQNDVPLARLMHSAKQYARMMDSGLPCTPVHNGVERRKF 456
GYHRY+RRLLS+YCASPSLAHS+LLEFNYRWNVRMAV N GL +EVG F+DQFEIEII+R+TASWYPDSP+F +WVSALD ADTGE+SGLSES GP G D+P++P + ++ + QN VP+ +L HSAK+YA+MM +G+P TPVH G E+RK+
Sbjct: 341 GYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDVPSEPSDLVDEQGLAQNAVPMPKLTHSAKKYAQMMHAGMPVTPVHTGAEKRKY 495
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE) HSP 1 Score: 231 bits (588), Expect = 4.170e-69 Identity = 107/155 (69.03%), Postives = 130/155 (83.87%), Query Frame = 1
Query: 1 GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGLSESFCGPDVGSDLPADP---LGDKEVVQNDVPLARLMHSAKQYARMMDSGLPCTPVHNGVERRKF 456
GYHRYLRRLLS+YCASPSLAHS+LLEFNYRWNVRMAV N GL +EVG F+DQFEIEII+R+TASWYPDSP+F +WVSALD ADTGE+SGLSES GP G D+P++P + ++ + QN VP+ +L HSAK+YA+MM +G+P TPVH G E+R F
Sbjct: 338 GYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDVPSEPSDLVDEQGLAQNAVPMPKLTHSAKKYAQMMHAGMPVTPVHTGAEKRNF 492
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.690e-53 Identity = 84/134 (62.69%), Postives = 107/134 (79.85%), Query Frame = 1
Query: 25 LLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGLSESFCGPDVGSDLPADPLGDKEVVQNDVPLARLMHSAKQYARMMDSGLPCTP 426
LLS+YCASP+LAHSILLEFN+RWN++MAV N L KE+GG +DQF+IEII+R+T SW DSP+FS+ VSALD ADTG+RSGL++S CG D D LG++E+VQN VPL ++ HSA +YARMM+ G+P P
Sbjct: 84 LLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGGCFDQFDIEIIQRETTSWDLDSPVFSERVSALDAADTGQRSGLAQSMCGGADAGDSGVDALGEQEMVQNAVPLPKITHSANEYARMMNVGMPECP 217
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.490e-37 Identity = 75/152 (49.34%), Postives = 95/152 (62.50%), Query Frame = 1
Query: 1 GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGLSESFCGPD--------VGSDLPADPLGDKEVVQNDVPLARLMHSAKQYARMMDSGLPCTPVH 432
GYHRYLR LL+SYCASPSLA S+LLEFNYRWN+RM + N GL +GG Y+Q+ +E I+RDTA W P+F +W +A+D DTGER GL S G + +D GD +V P++ L SAK YA+MM +P T VH
Sbjct: 661 GYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLWGGERDGEVWGIADNDAFCTDDGDSDV-NGRTPMSDLTLSAKMYAKMMGESMPETRVH 811
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE) HSP 1 Score: 137 bits (346), Expect = 8.560e-35 Identity = 70/166 (42.17%), Postives = 99/166 (59.64%), Query Frame = 1
Query: 1 GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGLSES---FCGPDVGSDL-------PADPLGDKEVVQNDVP----LARLMHSAKQYARMMDSGLPCTPVHNGVERRKF 456
GYHRYL+ LL+++CASP + H++L+EFN+RWN+ AV N G+ E+GGF Q+ I+ I+R TA WYPD P+FS WV+ D D+GER+GL+ S F G G+D+ P+D + V +L+ SA+ A +M P TPV E+ KF
Sbjct: 415 GYHRYLKTLLAAFCASPEVCHTVLMEFNHRWNISRAVENRGMAAEIGGFSHQYMIDHIQRATAEWYPDQPLFSGWVAPADFEDSGERAGLAASVLTFDGKPAGADVEDSFSPEPSDGGATSTDMNGSVDHRLHALQLLPSARHLASLMRFSTPVTPVSTPAEKEKF 580
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE) HSP 1 Score: 129 bits (325), Expect = 6.060e-32 Identity = 67/166 (40.36%), Postives = 95/166 (57.23%), Query Frame = 1
Query: 1 GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGLSES---FCGPDVGSDL-------PADPLGDKEVVQNDVP----LARLMHSAKQYARMMDSGLPCTPVHNGVERRKF 456
GYHRYL+ LL+ +CASP + H++L+EFN+RWN+ V N G+ E+G F Q+ I+ I+R TA WYPD P+FS WV+ D D+GER+ L+ S F G G+D+ P+D + V +L+ SA+ A +M P TPV E+ KF
Sbjct: 744 GYHRYLKTLLAYFCASPEVCHTVLMEFNHRWNISRTVENRGMSAEIGRFSHQYMIDHIQRVTAEWYPDQPLFSGWVAPADFEDSGERTNLAASVLTFDGKPAGADIEDSFSPEPSDRGATSTDMNGSVHHRLHAVQLLPSARHLASLMRFSTPVTPVSTPAEKEKF 909
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5K996_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K996_9PHAE) HSP 1 Score: 119 bits (297), Expect = 6.630e-31 Identity = 48/90 (53.33%), Postives = 69/90 (76.67%), Query Frame = 1
Query: 1 GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGL 270
GYHRYLR L +++CASP + HS+L+EFNYRWN+ AV+N G+ E+GGF Q+ I+ I+R TASWYP P++ +W++ +D D+GER+G
Sbjct: 96 GYHRYLRTLFANFCASPWVCHSVLMEFNYRWNISRAVDNRGMVAEIGGFSHQYLIDQIQRVTASWYPGQPLYPEWLAPVDFEDSGERAGF 185
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.290e-28 Identity = 50/69 (72.46%), Postives = 62/69 (89.86%), Query Frame = 1
Query: 76 EFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSDWVSALDVADTGERSGLSESF 282
EFNYRWN+RMAV N GL +EVG F+DQFEIEII+R+T+SWYPD+P+F +W+SALD ADTGE+SGLS+S
Sbjct: 659 EFNYRWNIRMAVKNRGLPREVGEFFDQFEIEIIQRETSSWYPDNPLFPEWISALDAADTGEKSGLSQSL 727
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE) HSP 1 Score: 111 bits (278), Expect = 3.800e-26 Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1
Query: 1 GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYDQFEIEIIERDTASWYPDSPMFSD 222
GYHR L RLLS+YCASP+LAHSILLEF +RWN++MAV N L KE+GG +DQF+IEII+R+T SW PD P+FS+
Sbjct: 360 GYHRLLLRLLSTYCASPALAHSILLEFKHRWNIKMAVKN--LSKEIGGCFDQFDIEIIQRETTSWDPDCPVFSE 431 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100108.1.1 >prot_L-digitata_M_contig100108.1.1 ID=prot_L-digitata_M_contig100108.1.1|Name=mRNA_L-digitata_M_contig100108.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=152bp GYHRYLRRLLSSYCASPSLAHSILLEFNYRWNVRMAVNNHGLRKEVGGFYback to top mRNA from alignment at L-digitata_M_contig100108:395..850- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100108.1.1 ID=mRNA_L-digitata_M_contig100108.1.1|Name=mRNA_L-digitata_M_contig100108.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=456bp|location=Sequence derived from alignment at L-digitata_M_contig100108:395..850- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100108:395..850- >mRNA_L-digitata_M_contig100108.1.1 ID=mRNA_L-digitata_M_contig100108.1.1|Name=mRNA_L-digitata_M_contig100108.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=456bp|location=Sequence derived from alignment at L-digitata_M_contig100108:395..850- (Laminaria digitata LdigPH10_18mv male)back to top |