mRNA_H-elongata_contig10001.5.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10001.5.1
Unique NamemRNA_H-elongata_contig10001.5.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10001.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10001contigH-elongata_contig10001:8150..8632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size485
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.1232433-CDS-H-elongata_contig10001:8149..86321622929543.1232433-CDS-H-elongata_contig10001:8149..8632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10001 8150..8632 +
1691679061.1266105-CDS-H-elongata_contig10001:8149..86321691679061.1266105-CDS-H-elongata_contig10001:8149..8632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10001 8150..8632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10001.5.1prot_H-elongata_contig10001.5.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10001 8150..8632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10001.5.1

>prot_H-elongata_contig10001.5.1 ID=prot_H-elongata_contig10001.5.1|Name=mRNA_H-elongata_contig10001.5.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
NVNGSRAENGTRESTWEGHDYRNHSGESPGNGALDSSVDSRRRNLSGNDT
RNVAGNSTRRGTGKHGFGNSTVGSSGNGAGDNPGNHTWIVSENGTLYSGS
GNISRDGSGNGTGTGHSFGSDAGRRSENGSGNGTRKDTRARDAAPPVIQM
ETKVAPAGGGG
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mRNA from alignment at H-elongata_contig10001:8150..8632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10001.5.1 ID=mRNA_H-elongata_contig10001.5.1|Name=mRNA_H-elongata_contig10001.5.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig10001:8150..8632+ (Himanthalia elongata Himel1 dioecious)
AATGTAAATGGGAGCAGAGCCGAGAACGGTACGAGGGAGAGCACGTGGGA
GGGGCATGATTACCGAAACCATAGTGGGGAAAGTCCCGGTAACGGTGCTT
TAGACAGTTCCGTGGACAGTAGGAGGAGAAACTTGTCCGGAAACGATACC
AGAAACGTTGCTGGGAACAGCACTAGACGAGGAACCGGGAAGCATGGCTT
CGGGAACAGTACCGTGGGAAGTTCCGGGAACGGTGCTGGAGACAATCCCG
GGAATCACACCTGGATCGTTTCCGAGAACGGTACTCTTTACAGCGGCAGT
GGGAACATTTCCAGGGACGGCTCTGGCAACGGTACCGGTACCGGGCACAG
CTTCGGGAGCGATGCTGGGAGAAGATCCGAGAACGGTTCCGGGAACGGTA
CCCGGAAGGACACGAGGGCGAGGGACGCGGCGCCGCCCGTCATTCAAATG
GAGACAAAGGTAGCGCCCGCTGGTGGCGGTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig10001:8150..8632+

>mRNA_H-elongata_contig10001.5.1 ID=mRNA_H-elongata_contig10001.5.1|Name=mRNA_H-elongata_contig10001.5.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig10001:8150..8632+ (Himanthalia elongata Himel1 dioecious)
AATGTAAATGGGAGCAGAGCCGAGAACGGTACGAGGGAGAGCACGTGGGA
GGGGCATGATTACCGAAACCATAGTGGGGAAAGTCCCGGTAACGGTGCTT
TAGACAGTTCCGTGGACAGTAGGAGGAGAAACTTGTCCGGAAACGATACC
AGAAACGTTGCTGGGAACAGCACTAGACGAGGAACCGGGAAGCATGGCTT
CGGGAACAGTACCGTGGGAAGTTCCGGGAACGGTGCTGGAGACAATCCCG
GGAATCACACCTGGATCGTTTCCGAGAACGGTACTCTTTACAGCGGCAGT
GGGAACATTTCCAGGGACGGCTCTGGCAACGGTACCGGTACCGGGCACAG
CTTCGGGAGCGATGCTGGGAGAAGATCCGAGAACGGTTCCGGGAACGGTA
CCCGGAAGGACACGAGGGCGAGGGACGCGGCGCCGCCCGTCATTCAAATG
GAGACAAAGGTAGCGCCCGCTGGTGGCGGTGGCAATGTAAATGGGAGCAG
AGCCGAGAACGGTACGAGGGAGAGCACGTGGGAGGGGCATGATTACCGAA
ACCATAGTGGGGAAAGTCCCGGTAACGGTGCTTTAGACAGTTCCGTGGAC
AGTAGGAGGAGAAACTTGTCCGGAAACGATACCAGAAACGTTGCTGGGAA
CAGCACTAGACGAGGAACCGGGAAGCATGGCTTCGGGAACAGTACCGTGG
GAAGTTCCGGGAACGGTGCTGGAGACAATCCCGGGAATCACACCTGGATC
GTTTCCGAGAACGGTACTCTTTACAGCGGCAGTGGGAACATTTCCAGGGA
CGGCTCTGGCAACGGTACCGGTACCGGGCACAGCTTCGGGAGCGATGCTG
GGAGAAGATCCGAGAACGGTTCCGGGAACGGTACCCGGAAGGACACGAGG
GCGAGGGACGCGGCGCCGCCCGTCATTCAAATGGAGACAAAGGTAGCGCC
CGCTGGTGGCGGTGGC
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