mRNA_H-elongata_contig185142.5000.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185142.5000.1
Unique NamemRNA_H-elongata_contig185142.5000.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185142.5000.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.940e-8
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    7 QVLTPRLGFDLSLRQANAYTRERAALVGDAAHTV 108
            +V+TPRLGFDLSLRQA+ YT +R ALVGDAAHTV
Sbjct:  442 EVVTPRLGFDLSLRQAHKYTGDRMALVGDAAHTV 475
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BLAST of mRNA_H-elongata_contig185142.5000.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.250e-8
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    4 LQVLTPRLGFDLSLRQANAYTRERAALVGDAAHTV 108
            ++V+TPRLGFDLSLRQA+ YT  R ALVGDAAHTV
Sbjct:  343 VEVVTPRLGFDLSLRQAHRYTGARMALVGDAAHTV 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185142.5000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1J7_ECTSI4.940e-879.41Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A6H5KUH3_9PHAE9.250e-877.14FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185142contigH-elongata_contig185142:772..879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.2035193-CDS-H-elongata_contig185142:771..8791622930059.2035193-CDS-H-elongata_contig185142:771..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185142 772..879 -
1691679264.9293838-CDS-H-elongata_contig185142:771..8791691679264.9293838-CDS-H-elongata_contig185142:771..879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185142 772..879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185142.5000.1prot_H-elongata_contig185142.5000.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185142 772..879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185142.5000.1

>prot_H-elongata_contig185142.5000.1 ID=prot_H-elongata_contig185142.5000.1|Name=mRNA_H-elongata_contig185142.5000.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MLQVLTPRLGFDLSLRQANAYTRERAALVGDAAHTV
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mRNA from alignment at H-elongata_contig185142:772..879-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185142.5000.1 ID=mRNA_H-elongata_contig185142.5000.1|Name=mRNA_H-elongata_contig185142.5000.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=108bp|location=Sequence derived from alignment at H-elongata_contig185142:772..879- (Himanthalia elongata Himel1 dioecious)
ATGCTGCAGGTATTGACCCCGAGGCTTGGATTTGATCTTTCCCTCCGCCA
GGCCAATGCCTACACCAGAGAGCGCGCCGCACTAGTTGGGGACGCCGCGC
ACACGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig185142:772..879-

>mRNA_H-elongata_contig185142.5000.1 ID=mRNA_H-elongata_contig185142.5000.1|Name=mRNA_H-elongata_contig185142.5000.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig185142:772..879- (Himanthalia elongata Himel1 dioecious)
ATGCTGCAGGTATTGACCCCGAGGCTTGGATTTGATCTTTCCCTCCGCCA
GGCCAATGCCTACACCAGAGAGCGCGCCGCACTAGTTGGGGACGCCGCGC
ACACGGTGATGCTGCAGGTATTGACCCCGAGGCTTGGATTTGATCTTTCC
CTCCGCCAGGCCAATGCCTACACCAGAGAGCGCGCCGCACTAGTTGGGGA
CGCCGCGCACACGGTG
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