mRNA_H-elongata_contig185099.4997.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185099.4997.1
Unique NamemRNA_H-elongata_contig185099.4997.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185099.4997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185099contigH-elongata_contig185099:296..683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.0584002-CDS-H-elongata_contig185099:295..6041622930059.0584002-CDS-H-elongata_contig185099:295..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185099 296..604 +
1691679264.866707-CDS-H-elongata_contig185099:295..6041691679264.866707-CDS-H-elongata_contig185099:295..604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185099 296..604 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930059.0736227-UTR-H-elongata_contig185099:604..6831622930059.0736227-UTR-H-elongata_contig185099:604..683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185099 605..683 +
1691679264.875399-UTR-H-elongata_contig185099:604..6831691679264.875399-UTR-H-elongata_contig185099:604..683Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig185099 605..683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185099.4997.1prot_H-elongata_contig185099.4997.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185099 296..604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185099.4997.1

>prot_H-elongata_contig185099.4997.1 ID=prot_H-elongata_contig185099.4997.1|Name=mRNA_H-elongata_contig185099.4997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MDEPASRTPQQLQQQQQYGNQPHYIVTVCRSSPSASPLSCWCWCEYGTNS
AIFVLHDFHFWEWSRASSSSSAPRRRSPLQPPHLYRVDPLLYRATGFGEV
LG*
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mRNA from alignment at H-elongata_contig185099:296..683+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185099.4997.1 ID=mRNA_H-elongata_contig185099.4997.1|Name=mRNA_H-elongata_contig185099.4997.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=388bp|location=Sequence derived from alignment at H-elongata_contig185099:296..683+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAACCGGCGAGTAGAACGCCACAACAGCTCCAGCAGCAACAGCA
ATATGGAAACCAGCCTCACTACATAGTTACGGTGTGCCGCTCCAGCCCCT
CAGCGAGCCCACTCAGCTGCTGGTGCTGGTGCGAGTACGGCACCAACAGC
GCCATATTCGTTCTTCATGATTTCCATTTCTGGGAGTGGAGTAGGGCATC
ATCATCATCATCAGCTCCCCGGCGTAGGTCTCCCTTGCAGCCCCCACACT
TGTATCGCGTAGATCCGCTCCTTTATCGGGCCACGGGCTTTGGGGAGGTA
TTGGGGTAGGTGGGCAGCTTGCTTCGCTAGCGGGCGGTGCCGCAGCGGGT
CTAGGAGGAGATGTGATGACTTACCCACGTTCGCCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig185099:296..683+

>mRNA_H-elongata_contig185099.4997.1 ID=mRNA_H-elongata_contig185099.4997.1|Name=mRNA_H-elongata_contig185099.4997.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig185099:296..683+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAACCGGCGAGTAGAACGCCACAACAGCTCCAGCAGCAACAGCA
ATATGGAAACCAGCCTCACTACATAGTTACGGTGTGCCGCTCCAGCCCCT
CAGCGAGCCCACTCAGCTGCTGGTGCTGGTGCGAGTACGGCACCAACAGC
GCCATATTCGTTCTTCATGATTTCCATTTCTGGGAGTGGAGTAGGGCATC
ATCATCATCATCAGCTCCCCGGCGTAGGTCTCCCTTGCAGCCCCCACACT
TGTATCGCGTAGATCCGCTCCTTTATCGGGCCACGGGCTTTGGGGAGGTA
TTGGGGTAGATGGACGAACCGGCGAGTAGAACGCCACAACAGCTCCAGCA
GCAACAGCAATATGGAAACCAGCCTCACTACATAGTTACGGTGTGCCGCT
CCAGCCCCTCAGCGAGCCCACTCAGCTGCTGGTGCTGGTGCGAGTACGGC
ACCAACAGCGCCATATTCGTTCTTCATGATTTCCATTTCTGGGAGTGGAG
TAGGGCATCATCATCATCATCAGCTCCCCGGCGTAGGTCTCCCTTGCAGC
CCCCACACTTGTATCGCGTAGATCCGCTCCTTTATCGGGCCACGGGCTTT
GGGGAGGTATTGGGGTAG
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