mRNA_H-elongata_contig185039.4995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig185039.4995.1
Unique NamemRNA_H-elongata_contig185039.4995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig185039.4995.1 vs. uniprot
Match: D7FSK3_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK3_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.730e-24
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:   22 ATADEFDASLYTRNASLSNDLDLFWIIDSDRETIRVAVHAKAASGWAGIGISEMGGMEGADIVYY 216
            A  D+FD S Y RN SL  ++D+FW +D + E IRVAVHAKAA+GWAG+GISEMGGMEGADIV+Y
Sbjct:   33 AAVDDFDGSSYARNVSLDTNVDIFWTVDLEAEAIRVAVHAKAATGWAGVGISEMGGMEGADIVFY 97
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BLAST of mRNA_H-elongata_contig185039.4995.1 vs. uniprot
Match: D7FP37_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP37_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.950e-23
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   22 ATADEFDASLYTRNASLSNDLDLFWIIDSDRETIRVAVHAKAASGWAGIGISEMGGMEGADIVYY 216
            A  D+F+ S Y RN SL  ++D+FW ID + ETIRVAVHAKAASGWAG+GISEMGGMEGADIVYY
Sbjct:   32 AATDDFNGSSYARNVSLDTNVDIFWTIDLEAETIRVAVHAKAASGWAGVGISEMGGMEGADIVYY 96
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BLAST of mRNA_H-elongata_contig185039.4995.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-22
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   22 ATADEFDASLYTRNASLSNDLDLFWIIDSDRETIRVAVHAKAASGWAGIGISEMGGMEGADIVYY 216
            A AD+FD S Y RN SL   +D+FW ID + +TIR+AVHAKAA+GWAG+GISEMGGMEGADIVYY
Sbjct:   32 AAADDFDGSSYARNVSLDTTVDIFWTIDLEADTIRLAVHAKAATGWAGVGISEMGGMEGADIVYY 96
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BLAST of mRNA_H-elongata_contig185039.4995.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.130e-22
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   22 ATADEFDASLYTRNASLSNDLDLFWIIDSDRETIRVAVHAKAASGWAGIGISEMGGMEGADIVYY 216
            A  D+FD S Y RN SL  ++D+FW +D + ETIRVAVHAKAA+GWAG+GISEMGGMEGADIV+Y
Sbjct:   20 AAVDDFDGSSYARNVSLDTNVDIFWTVDLEAETIRVAVHAKAATGWAGVGISEMGGMEGADIVFY 84
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BLAST of mRNA_H-elongata_contig185039.4995.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 4.270e-20
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   22 ATADEFDASLYTRNASLSNDLDLFWIIDSDRETIRVAVHAKAASGWAGIGISEMGGMEGADIVYY 216
            A   +FDAS Y RN S+  ++D+FW +D++  TI+VAVHAKAA+GWAG+G+SEMGGMEGADIVYY
Sbjct:   31 AAQQDFDASSYARNISVDPNVDVFWTVDANLGTIKVAVHAKAATGWAGLGVSEMGGMEGADIVYY 95
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BLAST of mRNA_H-elongata_contig185039.4995.1 vs. uniprot
Match: A0A6H5K5H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.350e-20
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   22 ATADEFDASLYTRNASLSNDLDLFWIIDSDRETIRVAVHAKAASGWAGIGISEMGGMEGADIVYY 216
            A   +FDAS Y RN SL  ++D+FW +D++  TI+  VHAKAA+GWAG+G+SEMGGMEG DIVYY
Sbjct:   31 AAQQDFDASSYARNVSLDPNVDVFWTVDANLGTIKAIVHAKAATGWAGLGVSEMGGMEGGDIVYY 95
[Close]
BLAST of mRNA_H-elongata_contig185039.4995.1 vs. uniprot
Match: D7G337_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G337_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.830e-20
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   22 ATADEFDASLYTRNASLSNDLDLFWIIDSDRETIRVAVHAKAASGWAGIGISEMGGMEGADI 207
            A AD FD S Y RN SL  ++D+FW +D + E+IRVAVHAKAA+GWAG+GISEMGGMEGADI
Sbjct:   20 AAADGFDGSSYARNVSLDTNVDIFWTVDLEAESIRVAVHAKAATGWAGVGISEMGGMEGADI 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig185039.4995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FSK3_ECTSI1.730e-2467.69DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FP37_ECTSI2.950e-2372.31DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FP38_ECTSI1.530e-2270.77DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7G216_ECTSI2.130e-2269.23DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D8LD47_ECTSI4.270e-2064.62DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K5H3_9PHAE4.350e-2061.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G337_ECTSI5.830e-2069.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig185039contigH-elongata_contig185039:1..216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D7FP37
EggNOG free text desc.octopamine biosynthetic process
EggNOG OGsKOG3568@1,KOG3568@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.944381-CDS-H-elongata_contig185039:0..2161622930058.944381-CDS-H-elongata_contig185039:0..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185039 1..216 -
1691679264.8291306-CDS-H-elongata_contig185039:0..2161691679264.8291306-CDS-H-elongata_contig185039:0..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig185039 1..216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig185039.4995.1prot_H-elongata_contig185039.4995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig185039 1..216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig185039.4995.1

>prot_H-elongata_contig185039.4995.1 ID=prot_H-elongata_contig185039.4995.1|Name=mRNA_H-elongata_contig185039.4995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MVSTFSRATADEFDASLYTRNASLSNDLDLFWIIDSDRETIRVAVHAKAA
SGWAGIGISEMGGMEGADIVYY
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mRNA from alignment at H-elongata_contig185039:1..216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig185039.4995.1 ID=mRNA_H-elongata_contig185039.4995.1|Name=mRNA_H-elongata_contig185039.4995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig185039:1..216- (Himanthalia elongata Himel1 dioecious)
ATGGTCTCAACGTTTTCGAGGGCGACTGCGGATGAATTCGACGCGTCCCT
GTACACCCGAAACGCTTCGCTCAGCAACGATCTCGACCTCTTCTGGATCA
TAGACTCTGACCGCGAGACCATCCGCGTCGCCGTTCATGCAAAGGCAGCT
TCCGGCTGGGCTGGAATTGGAATATCTGAGATGGGAGGCATGGAAGGAGC
CGACATCGTGTACTAC
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Coding sequence (CDS) from alignment at H-elongata_contig185039:1..216-

>mRNA_H-elongata_contig185039.4995.1 ID=mRNA_H-elongata_contig185039.4995.1|Name=mRNA_H-elongata_contig185039.4995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig185039:1..216- (Himanthalia elongata Himel1 dioecious)
ATGGTCTCAACGTTTTCGAGGGCGACTGCGGATGAATTCGACGCGTCCCT
GTACACCCGAAACGCTTCGCTCAGCAACGATCTCGACCTCTTCTGGATCA
TAGACTCTGACCGCGAGACCATCCGCGTCGCCGTTCATGCAAAGGCAGCT
TCCGGCTGGGCTGGAATTGGAATATCTGAGATGGGAGGCATGGAAGGAGC
CGACATCGTGTACTACATGGTCTCAACGTTTTCGAGGGCGACTGCGGATG
AATTCGACGCGTCCCTGTACACCCGAAACGCTTCGCTCAGCAACGATCTC
GACCTCTTCTGGATCATAGACTCTGACCGCGAGACCATCCGCGTCGCCGT
TCATGCAAAGGCAGCTTCCGGCTGGGCTGGAATTGGAATATCTGAGATGG
GAGGCATGGAAGGAGCCGACATCGTGTACTAC
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