mRNA_H-elongata_contig184949.4991.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: D7FVN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN9_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.490e-48 Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 1
Query: 1 VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQEVVE 312
VSK GRIKWSEVT+L+KGGVFTHGSI+ELRRLKGWEGP VLYFGDSLWADLVEARKLHGWTTGAIIYDVELELE M + Y +L+ RA ALE+LLP VQ+V E
Sbjct: 402 VSKRDGRIKWSEVTHLKKGGVFTHGSIAELRRLKGWEGPSVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEKMSSPMYHQLSKRALALEILLPLVQDVAE 505
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: K8YVS7_NANGC (5-nucleotidase domain-containing n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVS7_NANGC) HSP 1 Score: 119 bits (299), Expect = 1.790e-30 Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQEVVE 312
V K TG+I+W+EVT LEKG V++HGS+ L +L GW+GPRVLY GD +WADLV R+ GW TGA+I ++E EL + + +YR+ AH+A + LL VQE +E
Sbjct: 224 VDKRTGKIRWTEVTTLEKGKVYSHGSLEGLTKLTGWQGPRVLYIGDQIWADLVGGRRNQGWRTGAVIRELEYELVVQQSKKYRQYAHQAVTVTELLRLVQEEME 327
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A4D9D0E6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0E6_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.850e-29 Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQEVVE 312
V K TG+I+W+EVT LEKG V++HGS+ L +L GW+GPRVLY GD +WADLV R+ GW TGA+I ++E EL + + +YR+ AH+A + LL VQE +E
Sbjct: 281 VDKRTGKIRWTEVTTLEKGKVYSHGSLEGLTKLTGWQGPRVLYIGDQIWADLVGGRRNQGWRTGAVIRELEYELVVQQSKKYRQYAHQAVTVTELLRLVQEEME 384
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A7S1UIE1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIE1_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.240e-28 Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1
Query: 16 GRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQ 300
GR+ W VT LEKG V+THGS++EL RL GW GP VLYFGDSLWADLV+AR+LHGWTT A++ +VE ++ + EY + ++ L LL VQ
Sbjct: 277 GRVTWEAVTELEKGCVYTHGSLAELARLTGWNGPNVLYFGDSLWADLVDARRLHGWTTAAVVAEVEEDIRVQHQDEYAYVLNKRGLLRELLRLVQ 371
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: W4FHV2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FHV2_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.120e-21 Identity = 48/95 (50.53%), Postives = 68/95 (71.58%), Query Frame = 1
Query: 19 RIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQE 303
+++W VT L V+T GS+ +L LKGW G +VLY GDSL+ADLVE ++ GW TGAII ++E E++I ++ Y+RLA + +LEVLL Q+QE
Sbjct: 315 QVQWQAVTDLLPHHVYTQGSLRQLIALKGWRGGKVLYIGDSLFADLVEPNRILGWRTGAIIRELEDEIQIQNSPAYQRLAFQHASLEVLLRQLQE 409
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: H3HDU7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDU7_PHYRM) HSP 1 Score: 94.4 bits (233), Expect = 2.020e-20 Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 1
Query: 19 RIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQ 300
+++W V LE+G V+T GS+ L +L GW G RVLY GD+L++DLVE + +GW TGAII ++E E+++ T EY+RLA + + E L+ +Q
Sbjct: 321 QVQWHAVRALERGDVYTQGSLYHLSKLTGWVGSRVLYIGDNLFSDLVEPSRANGWRTGAIIRELEDEMKVQRTPEYQRLAFQINKFEELMRNIQ 414
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: D0NVX5_PHYIT (5'-nucleotidase domain-containing protein, putative n=10 Tax=Phytophthora TaxID=4783 RepID=D0NVX5_PHYIT) HSP 1 Score: 92.4 bits (228), Expect = 9.830e-20 Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 19 RIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQ 300
+++W V L +G V+T GS+ +L +L GW G RVLY GD+L++DLVE + +GW TGAII ++E E+ + T EY+RLA + +E L+ +Q
Sbjct: 311 QVQWQAVRALHRGEVYTQGSVYQLSKLTGWVGSRVLYIGDNLFSDLVEPSRANGWRTGAIIRELEDEMNVHRTPEYQRLAFQISKIEELMRSIQ 404
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A7R9UAG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAG4_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.750e-19 Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 1 VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGW---------EGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHAL 276
VS TGR+K+ +T LEK V+ GSI+E+ RLK W +G R+LY GDSL+ADLV+AR+L+GW TGAII +V E + + +R+ + H L
Sbjct: 380 VSVRTGRVKFKPITSLEKDEVYCDGSIAEMMRLKNWGYDPKDGTFDGSRILYLGDSLFADLVDARRLYGWVTGAIIREVRHEAYVQSSPAWRQAKYITHTL 480
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A485KJC8_9STRA (Aste57867_8102 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJC8_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 4.800e-19 Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 19 RIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQEV 306
+++W V+ L V+T GS+ +L LKGW G +VLY GDSL+ADLVE ++ GW TGAII ++E E++I + Y++LA + ALE LL ++Q+V
Sbjct: 318 QVQWQAVSELLPHNVYTQGSLRQLIALKGWVGGKVLYIGDSLFADLVEPSRILGWRTGAIIRELEDEIKIQSSPAYQKLAFQHAALEDLLRKMQDV 413
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Match: A0A553NPM0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NPM0_TIGCA) HSP 1 Score: 90.1 bits (222), Expect = 6.770e-19 Identity = 40/94 (42.55%), Postives = 65/94 (69.15%), Query Frame = 1
Query: 22 IKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWADLVEARKLHGWTTGAIIYDVELELEIMDTAEYRRLAHRAHALEVLLPQVQE 303
+ W +V+ LE+G +++ G+I+EL+ L GWEG RVLYFGD +ADL + HGW TGAII ++E E+ +M+ +Y+ + A L++L+ + Q+
Sbjct: 341 LSWKQVSRLERGRIYSRGNINELQDLTGWEGDRVLYFGDHPYADLADLSLNHGWRTGAIIKEIEEEVSVMNLEQYKWGMNWATVLQILIDENQD 434 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184949.4991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig184949.4991.1 >prot_H-elongata_contig184949.4991.1 ID=prot_H-elongata_contig184949.4991.1|Name=mRNA_H-elongata_contig184949.4991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp VSKSTGRIKWSEVTYLEKGGVFTHGSISELRRLKGWEGPRVLYFGDSLWAback to top mRNA from alignment at H-elongata_contig184949:9..1117- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig184949.4991.1 ID=mRNA_H-elongata_contig184949.4991.1|Name=mRNA_H-elongata_contig184949.4991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1109bp|location=Sequence derived from alignment at H-elongata_contig184949:9..1117- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig184949:9..1117- >mRNA_H-elongata_contig184949.4991.1 ID=mRNA_H-elongata_contig184949.4991.1|Name=mRNA_H-elongata_contig184949.4991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig184949:9..1117- (Himanthalia elongata Himel1 dioecious)back to top |