mRNA_H-elongata_contig184906.4990.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184906.4990.1
Unique NamemRNA_H-elongata_contig184906.4990.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: D7FZX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX0_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.470e-34
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIA 276
            DLAQRHLKELMQRDL QVKADV  EEKFD AK+HDEITELEKRVFQRRETDEVR   XXXXXXXXXXXVILQYGIGFFGS+IA+GLAVARIA
Sbjct:  110 DLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIA 201
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BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: A0A6H5KWP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP7_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.080e-34
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIA 276
            DLAQRHLKELMQRDL QVKADV  EEKFD AK+HDEITELEKRVFQRRETDEVR   XXXXXXXXXXXVILQYGIGFFGS+IA+GLAVARIA
Sbjct:  124 DLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRVFQRRETDEVRXXXXXXXXXXXXXXVILQYGIGFFGSVIAMGLAVARIA 215
[Close]
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: K3WEB9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEB9_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-8
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIAM 279
            D+AQRH++EL++RD   +K D+   EK D  K+  EI E+EK+   +++ ++    +           + LQY +GF G+I+A+G A+ R+ M
Sbjct:  109 DIAQRHMRELLERDFNNLKQDIRMLEKIDFDKIRVEIAEIEKKFLLQKQAEDETLNELRLSMEKVEKRM-LQYAVGFAGTIMAVGAALMRLVM 200
[Close]
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: M4BI08_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BI08_HYAAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.300e-8
Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIAM 279
            D+AQRH +EL++RD   +K D+   EK D  K+  EI ELEK+   +++ ++    +           + LQY +GF G+I+A+G A+ R+ +
Sbjct:  123 DIAQRHSRELLERDFNTLKQDIRMPEKIDFDKIRMEIAELEKKFLLQKQAEDKTLNELRLTMEKVETRM-LQYSVGFAGTIMAVGAALMRLVL 214
[Close]
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: A0A662XGR2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGR2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.090e-8
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    4 LAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIAM 279
            +AQRH +EL++RD   +K D+   EK D  K+  EI ELEK+   +++ ++    +           + LQY +GF G+I+A+G A+ R+ M
Sbjct:   27 IAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKRM-LQYAVGFAGTIMAVGAALMRLVM 117
[Close]
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: A0A8J5ITH5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5ITH5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.750e-8
Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIAM 279
            D+AQRH +EL++RD   +K D+   EK D  K+  EI ELEK+   +++ ++    +           + LQY +GF G+I+A+G A+ R+ +
Sbjct:   89 DIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKRM-LQYAVGFAGTIMAVGAALMRLVL 180
[Close]
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: G4YRP2_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YRP2_PHYSP)

HSP 1 Score: 57.0 bits (136), Expect = 7.140e-8
Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIAM 279
            D+AQRH +EL++RD   +K D+   EK D  K+  EI ELEK+   +++ ++    +           + LQY +GF G+I+A+G A+ R+ +
Sbjct:   93 DIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKRM-LQYAVGFAGTIMAVGAALLRLVL 184
[Close]
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: A0A0W8DGD0_PHYNI (Chloride Channel (ClC) Family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DGD0_PHYNI)

HSP 1 Score: 57.0 bits (136), Expect = 7.540e-8
Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIAM 279
            D+AQRH +EL++RD   +K D+   EK D  K+  EI ELEK+   +++ ++    +           + LQY +GF G+I+A+G A+ R+ +
Sbjct:   97 DIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKRM-LQYAVGFAGTIMAVGAALLRLVL 188
[Close]
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: A0A0P1ADT0_PLAHL (Uncharacterized membrane protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADT0_PLAHL)

HSP 1 Score: 57.0 bits (136), Expect = 9.960e-8
Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIAM 279
            D+AQRH +EL++RD   +K D+   EK D  K+  EI ELEK+   +++ ++    +           + LQY +GF G+I+A+G A+ R+ +
Sbjct:  120 DIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKVEKRM-LQYAVGFAGTIMAVGAALLRLVL 211
[Close]
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Match: A0A5D6XU22_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XU22_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.050e-7
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 DLAQRHLKELMQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQXXXXXXXXXXXVILQYGIGFFGSIIALGLAVARIAM 279
            D+AQRH++EL++RD   +K D+   EK D  K+  EI E+EK++    E  E R               +LQY +GF G+I+A+G A+ R+ +
Sbjct:  111 DIAQRHMRELLERDFNNLKQDIRMLEKIDFDKIRVEIAEIEKKLRLSMEKVEKR---------------MLQYAVGFAGTIMAVGAALTRLVL 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184906.4990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FZX0_ECTSI1.470e-3489.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWP7_9PHAE2.080e-3489.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3WEB9_GLOUD1.190e-834.41Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
M4BI08_HYAAE5.300e-834.41Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A662XGR2_9STRA6.090e-834.78Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A8J5ITH5_9STRA6.750e-834.41Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G4YRP2_PHYSP7.140e-834.41Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A0W8DGD0_PHYNI7.540e-834.41Chloride Channel (ClC) Family n=1 Tax=Phytophthora... [more]
A0A0P1ADT0_PLAHL9.960e-834.41Uncharacterized membrane protein n=1 Tax=Plasmopar... [more]
A0A5D6XU22_9STRA1.050e-736.56Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184906contigH-elongata_contig184906:93..1078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue8.4e-22
Seed eggNOG ortholog2880.D7FZX0
KEGG koko:K22137
EggNOG free text desc.Protein of unknown function (DUF1640)
EggNOG OGs29YXM@1,2RXUY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184906.4990.1prot_H-elongata_contig184906.4990.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184906 93..1048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.5767415-CDS-H-elongata_contig184906:92..2451622930058.5767415-CDS-H-elongata_contig184906:92..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184906 93..245 -
1691679264.6839511-CDS-H-elongata_contig184906:92..2451691679264.6839511-CDS-H-elongata_contig184906:92..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184906 93..245 -
1622930058.5875783-CDS-H-elongata_contig184906:949..10481622930058.5875783-CDS-H-elongata_contig184906:949..1048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184906 950..1048 -
1691679264.70174-CDS-H-elongata_contig184906:949..10481691679264.70174-CDS-H-elongata_contig184906:949..1048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184906 950..1048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.598436-UTR-H-elongata_contig184906:1048..10781622930058.598436-UTR-H-elongata_contig184906:1048..1078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184906 1049..1078 -
1691679264.7166054-UTR-H-elongata_contig184906:1048..10781691679264.7166054-UTR-H-elongata_contig184906:1048..1078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184906 1049..1078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184906.4990.1

>prot_H-elongata_contig184906.4990.1 ID=prot_H-elongata_contig184906.4990.1|Name=mRNA_H-elongata_contig184906.4990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MQRDLGQVKADVMQEEKFDIAKVHDEITELEKRVFQRRETDEVRFTQVHT
EIAALERRVILQYGIGFFGSIIALGLAVARIAM*
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mRNA from alignment at H-elongata_contig184906:93..1078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184906.4990.1 ID=mRNA_H-elongata_contig184906.4990.1|Name=mRNA_H-elongata_contig184906.4990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=986bp|location=Sequence derived from alignment at H-elongata_contig184906:93..1078- (Himanthalia elongata Himel1 dioecious)
GACCTCGCTCAGCGACACCTGAAGGAGTTGATGCAGAGGGACCTCGGCCA
GGTGAAAGCCGACGTGATGCAGGAGGAAAAATTCGACATTGCTAAGGTGC
ACGACGAAATTACGGAGCTGGAGAAACGGGTGAGTCATTCGGAGGAAAAC
GCTATTAATAGATATGATCTACCGATGAGATGAGGAGAGGAGGGCTCGAG
CTCTACGGCCAGAAGAAAACGTCTGCTCTCTTCCCTCGCGCGTCTATTTC
GCGTTTAAAGTGTTTTCGTCAATTTCAGGTAGCGATTCAGACCGTGCGCG
CCTGCTTGACACATACGAGTTTGTTGTTTTTTAGTTGCACCATTATTGGT
GGCGACTTAAGTATTTCTAACGCTCAGATGCAAAAGCGATTTTGACCCAC
AGGTTGTCCGCCCCTCCGCTCCTAGGAATCCAATCCCTCGATCGTAAGTC
CGCGGAATACCGCTCTGGAGCGGGCACGTTTTCGGCGTATGTGTGAACCG
CGTGTGAATCCATCGAAATACACTTCTTGCGAGCAAGCGTTCTTTGGCGC
TGGGACCACGGTGTACCCAAGTAGCTACATATCTCTAGGAAATCTTTCCG
ACCGACCGGCCCCATTTGTGAGCGCCCCGTTGCAAACGAGTTTTCTTTAC
ATCTCTCTAGGAAACCATTCTGACCGGCCGACGCCAGATGTCAACGTGTT
TCCATAGGGAAAGCATTCTATCCCAATTAACTACTCTCTAGAAAACCGTT
CCAAGTGAATCGATGCTACATGCTAATGTATCCCCGCTGCGGGGGGTTCC
CCGGCGAACAAATGTCCTCTCGGTACGTGGCAGGTTTTCCAGCGTCGAGA
AACGGACGAGGTGCGGTTTACTCAGGTCCACACCGAGATCGCCGCGCTCG
AGCGAAGGGTCATCCTGCAATACGGCATTGGATTTTTCGGCAGCATAATC
GCGCTGGGCCTGGCCGTCGCTCGGATCGCCATGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig184906:93..1078-

>mRNA_H-elongata_contig184906.4990.1 ID=mRNA_H-elongata_contig184906.4990.1|Name=mRNA_H-elongata_contig184906.4990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig184906:93..1078- (Himanthalia elongata Himel1 dioecious)
ATGCAGAGGGACCTCGGCCAGGTGAAAGCCGACGTGATGCAGGAGGAAAA
ATTCGACATTGCTAAGGTGCACGACGAAATTACGGAGCTGGAGAAACGGA
TGCAGAGGGACCTCGGCCAGGTGAAAGCCGACGTGATGCAGGAGGAAAAA
TTCGACATTGCTAAGGTGCACGACGAAATTACGGAGCTGGAGAAACGGGT
TTTCCAGCGTCGAGAAACGGACGAGGTGCGGTTTACTCAGGTCCACACCG
AGATCGCCGCGCTCGAGCGAAGGGTCATCCTGCAATACGGCATTGGATTT
TTCGGCAGCATAATCGCGCTGGGCCTGGCCGTCGCTCGGATCGCCATGTA
GGTTTTCCAGCGTCGAGAAACGGACGAGGTGCGGTTTACTCAGGTCCACA
CCGAGATCGCCGCGCTCGAGCGAAGGGTCATCCTGCAATACGGCATTGGA
TTTTTCGGCAGCATAATCGCGCTGGGCCTGGCCGTCGCTCGGATCGCCAT
GTAG
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