mRNA_H-elongata_contig184901.4989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184901.4989.1
Unique NamemRNA_H-elongata_contig184901.4989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184901.4989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184901contigH-elongata_contig184901:127..410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184901.4989.1prot_H-elongata_contig184901.4989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184901 127..365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.506162-CDS-H-elongata_contig184901:126..2221622930058.506162-CDS-H-elongata_contig184901:126..222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184901 127..222 -
1691679264.6520247-CDS-H-elongata_contig184901:126..2221691679264.6520247-CDS-H-elongata_contig184901:126..222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184901 127..222 -
1622930058.52585-CDS-H-elongata_contig184901:332..3651622930058.52585-CDS-H-elongata_contig184901:332..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184901 333..365 -
1691679264.6635582-CDS-H-elongata_contig184901:332..3651691679264.6635582-CDS-H-elongata_contig184901:332..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184901 333..365 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.5400622-UTR-H-elongata_contig184901:365..4101622930058.5400622-UTR-H-elongata_contig184901:365..410Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184901 366..410 -
1691679264.6732275-UTR-H-elongata_contig184901:365..4101691679264.6732275-UTR-H-elongata_contig184901:365..410Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184901 366..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184901.4989.1

>prot_H-elongata_contig184901.4989.1 ID=prot_H-elongata_contig184901.4989.1|Name=mRNA_H-elongata_contig184901.4989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MFQRGRTAKKEVPVRLSRVARRPEKQQDASRWGLSCLGNFLL*
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mRNA from alignment at H-elongata_contig184901:127..410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184901.4989.1 ID=mRNA_H-elongata_contig184901.4989.1|Name=mRNA_H-elongata_contig184901.4989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=284bp|location=Sequence derived from alignment at H-elongata_contig184901:127..410- (Himanthalia elongata Himel1 dioecious)
AATTTGGATGAGGCGCACAAACTCACTGGCAACAACTAGTATCATATGTT
CCAGCGGGGACGAACTGCCAAGAAAGAAGTGAGCGATACGGCTAGGTACT
TTGTAGACTGGCGCATCACGAGTGAAAAAACGAACAAACCACTCCTCGTG
GTTGTGGTTTCTTACGAACTCTTGTATTATTAACCCAGGTTCCTGTGAGG
CTGTCAAGAGTTGCTCGGAGGCCTGAGAAGCAACAGGATGCGTCAAGATG
GGGCCTTTCCTGTCTAGGTAATTTTCTCCTATAG
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Coding sequence (CDS) from alignment at H-elongata_contig184901:127..410-

>mRNA_H-elongata_contig184901.4989.1 ID=mRNA_H-elongata_contig184901.4989.1|Name=mRNA_H-elongata_contig184901.4989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig184901:127..410- (Himanthalia elongata Himel1 dioecious)
ATGTTCCAGCGGGGACGAACTGCCAAGAAAGAAATGTTCCAGCGGGGACG
AACTGCCAAGAAAGAAGTTCCTGTGAGGCTGTCAAGAGTTGCTCGGAGGC
CTGAGAAGCAACAGGATGCGTCAAGATGGGGCCTTTCCTGTCTAGGTAAT
TTTCTCCTATAGGTTCCTGTGAGGCTGTCAAGAGTTGCTCGGAGGCCTGA
GAAGCAACAGGATGCGTCAAGATGGGGCCTTTCCTGTCTAGGTAATTTTC
TCCTATAG
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