mRNA_H-elongata_contig184887.4986.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.790e-18 Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1
Query: 1 RCEPEVRFLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
R PEV+F AED EHSVW ++DPV VFAIQ+AFE V +TYIADGHHRSASAFR
Sbjct: 167 RENPEVQFRAEDGTEHSVWAVRDPVDVFAIQRAFESVKTTYIADGHHRSASAFR 220
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: A0A836CBS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS0_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.610e-13 Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 10 PEVRFLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
PE F+A+D + H VWP++DP V +Q+AF V +YIADGHHRSASAFR
Sbjct: 170 PETEFVADDGIGHKVWPVRDPYMVRDLQRAFAAVPCSYIADGHHRSASAFR 220
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: A0A5B8XW79_9DELT (DUF1015 domain-containing protein n=1 Tax=Bradymonadales bacterium V1718 TaxID=2600177 RepID=A0A5B8XW79_9DELT) HSP 1 Score: 67.4 bits (163), Expect = 9.410e-12 Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 4 CEPEVRFLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
EP+V F+A+D + H++W IKD V A+Q AFE V + YIADGHHRSASA R
Sbjct: 167 AEPDVDFVADDQIAHTIWVIKDESKVNALQSAFEKVPALYIADGHHRSASAAR 219
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: A0A356R6V1_9BACT (Uncharacterized protein n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A356R6V1_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 2.670e-11 Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 10 PEVRFLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
P+V F+AED +EH+VW ++DP ++ + K F+ + + YIADGHHRSA+A R
Sbjct: 22 PDVHFVAEDKIEHTVWSVRDPSSIQEVMKNFQDLPALYIADGHHRSAAASR 72
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: A0A356R4K0_9BACT (DUF1015 domain-containing protein n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A356R4K0_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 4.540e-11 Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 10 PEVRFLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
P+V F+AED +EH+VW ++DP A+ + K F+ + + YIADGHHRSA+A R
Sbjct: 169 PDVHFVAEDKIEHTVWSVRDPSAIQEVIKDFQDLPALYIADGHHRSAAASR 219
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: A0A2I0N3Q1_9CLOT (Uncharacterized protein n=1 Tax=Clostridiaceae bacterium JG1575 TaxID=1658742 RepID=A0A2I0N3Q1_9CLOT) HSP 1 Score: 64.7 bits (156), Expect = 8.510e-11 Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 10 PEVRFLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
PE F AED V+H+VW I+D AI+KAF+G+ + YIADGHHR+ASA +
Sbjct: 168 PEYDFTAEDGVQHTVWVIRDAKDNAAIEKAFQGIEALYIADGHHRAASAVK 218
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: A0A1F3VML3_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrionales bacterium RIFOXYC1_FULL_37_79 TaxID=1797395 RepID=A0A1F3VML3_9PROT) HSP 1 Score: 64.3 bits (155), Expect = 1.160e-10 Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 10 PEVRFLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
PEV F+A D++ H+VW IKDP + I + F+ + S Y+ADGHHRSASA R
Sbjct: 170 PEVDFVATDNIAHTVWVIKDPQLIKQISELFKSIDSLYVADGHHRSASAAR 220
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: R7H7X2_9FIRM (Uncharacterized protein n=2 Tax=Eubacteriales TaxID=186802 RepID=R7H7X2_9FIRM) HSP 1 Score: 63.5 bits (153), Expect = 2.180e-10 Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 22 FLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
F++ D V H VW I +P +V AI+ AFEG+SS YIADGHHR+ASA +
Sbjct: 173 FVSPDGVRHQVWKISEPQSVKAIRGAFEGISSIYIADGHHRAASAVK 219
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: UPI00047EA559 (DUF1015 family protein n=1 Tax=Lacrimispora aerotolerans TaxID=36832 RepID=UPI00047EA559) HSP 1 Score: 63.5 bits (153), Expect = 2.180e-10 Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 22 FLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
F AED + H +W + D V V I++AF GV STYIADGHHR+ASA +
Sbjct: 173 FTAEDGISHKIWQVSDEVTVSEIEQAFVGVPSTYIADGHHRAASAVK 219
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Match: D4JC82_9FIRM (Uncharacterized conserved protein n=6 Tax=Coprococcus catus TaxID=116085 RepID=D4JC82_9FIRM) HSP 1 Score: 63.2 bits (152), Expect = 2.980e-10 Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 22 FLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSASAFR 162
F AED + H VW + D +AV AI+KAF V + YIADGHHR+ASAF+
Sbjct: 173 FEAEDGIRHRVWIVDDDLAVAAIEKAFAAVDALYIADGHHRAASAFK 219 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184887.4986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig184887.4986.1 >prot_H-elongata_contig184887.4986.1 ID=prot_H-elongata_contig184887.4986.1|Name=mRNA_H-elongata_contig184887.4986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp RCEPEVRFLAEDSVEHSVWPIKDPVAVFAIQKAFEGVSSTYIADGHHRSAback to top mRNA from alignment at H-elongata_contig184887:252..416- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig184887.4986.1 ID=mRNA_H-elongata_contig184887.4986.1|Name=mRNA_H-elongata_contig184887.4986.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig184887:252..416- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig184887:252..416- >mRNA_H-elongata_contig184887.4986.1 ID=mRNA_H-elongata_contig184887.4986.1|Name=mRNA_H-elongata_contig184887.4986.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig184887:252..416- (Himanthalia elongata Himel1 dioecious)back to top |