mRNA_H-elongata_contig184815.4983.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A6H5KGW7_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW7_9PHAE) HSP 1 Score: 215 bits (547), Expect = 4.860e-63 Identity = 127/232 (54.74%), Postives = 142/232 (61.21%), Query Frame = 1
Query: 4 RKEMMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADHETSLAGESD----------------------------ATP----------------------------APSHLEADAFWLFSAVMTGLEGFYEHGG-VVSDRRRPAGGGVGGGRGVDSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQVNLL 528
RKEM DTIKADLERL+PTGCG+HFLAPARQ+LLLSVLS+WADL+ T YRQGMHEVLAPL+L LEKEVAAATRA ++AG+S A+P P LEADAFWLFSAVM+GLE FYEHG S AG G G G VDSPV+EMCKRLQG R+R ADPELQ+HL+HLDISPQ L
Sbjct: 130 RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTGTAYRQGMHEVLAPLILVLEKEVAAATRA----EAIAGDSTXXXXXXXXXXXXXXXXXXXXXXXXXXVKASPWVGKSIVNGEPLNAGTHPAFAAILGHGSTPEDLEADAFWLFSAVMSGLERFYEHGEKATSTSALGAGRGGGEGGSVDSPVVEMCKRLQGVRMRAADPELQQHLSHLDISPQAGYL 357
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A194XLJ2_9HELO (RabGAP/TBC n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A194XLJ2_9HELO) HSP 1 Score: 102 bits (255), Expect = 3.360e-22 Identity = 65/178 (36.52%), Postives = 98/178 (55.06%), Query Frame = 1
Query: 1 KRKEMMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADHETSLAGESDATPAPSHLEADAFWLFSAVMTGLEGFYEHGGVVSDRR--RPAGGGVGGGRGVDSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQVNLL 528
K +E+ I D+ER P +F +P Q++LL +L ++ ++ D GYRQGMHEVLAP++ +E++ D + + DAT ++E DAF L S +M + FYE DRR P GGG +G SP++E KR+ L DPEL KHL+ +++ PQ+ L+
Sbjct: 108 KDEEIRAEIFQDVERCMPEE--PYFRSPETQRMLLDILFIFCKINQDVGYRQGMHEVLAPILWVVEQDAIENAPQKDQNSVMEQILDAT----YIEHDAFTLLSLIMRSAKSFYEL--AEPDRRVSTPLGGGKSPEQGA-SPIVERSKRIHEVYLARLDPELAKHLSDIEVLPQIFLI 276
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A8H6L6E1_9LECA (Rab-GAP TBC domain-containing protein n=2 Tax=Letharia TaxID=112415 RepID=A0A8H6L6E1_9LECA) HSP 1 Score: 99.8 bits (247), Expect = 3.960e-21 Identity = 62/174 (35.63%), Postives = 95/174 (54.60%), Query Frame = 1
Query: 7 KEMMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADHETSLAGESDATPAPSHLEADAFWLFSAVMTGLEGFYEHGGVVSDRRRPAGGGVGGGRGVDSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQVNLL 528
+E+ I D+ER P +F P QK+LL +L ++ L+ D GYRQGMHEVLAP++ + ++ + L G + A+ ++E DAF LF+A+M ++ FYE G PA G+ +SP++E KR+ L ADPEL +HL ++I PQ+ L+
Sbjct: 109 EELRAEIFQDVERCMPENL--YFREPNTQKMLLDILFIYCKLNRDIGYRQGMHEVLAPILWVVSRDAIDSQSLGPDHADLDGLTLASLDNRYVEHDAFTLFAAIMQTVKTFYEMG----SNNEPATAGLLN----NSPIVERSKRIHENYLHHADPELAEHLTAIEILPQIFLI 272
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A8H4RWE6_9HELO (Rab-GAP TBC domain-containing protein n=1 Tax=Cudoniella acicularis TaxID=354080 RepID=A0A8H4RWE6_9HELO) HSP 1 Score: 99.8 bits (247), Expect = 3.990e-21 Identity = 66/180 (36.67%), Postives = 98/180 (54.44%), Query Frame = 1
Query: 7 KEMMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADHETSLAGESDATPA----PSHLEADAFWLFSAVMTGLEGFYEHGGVVSDRRRPAGGGVGGG--RGVDSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQVNLL 528
+E I D+ER P E+F P Q++LL +L ++ ++ D GYRQGMHEVLAP++ +E++ A HE + ESD P+++E DAF + S VM + FYE G DR+ A + G +G SP++E KR+ L DPEL KHL +++ PQ+ L+
Sbjct: 106 EEFRAEIYQDVERCMPEE--EYFRQPETQRILLDILFVFCKINQDVGYRQGMHEVLAPILWVVEQD---AIDRECHEQTSESESDFLMKEMLDPTYIEHDAFTILSLVMRSAKSFYELG--EPDRKPSASSSMAGTPQQGA-SPIVERSKRIHEVYLARLDPELAKHLTDIEVLPQIFLI 277
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A2R5GTG8_9STRA (TBC1 domain family member 5 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTG8_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.260e-20 Identity = 56/123 (45.53%), Postives = 71/123 (57.72%), Query Frame = 1
Query: 1 KRKEMMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAA-------DHETSLAGES-----DATPAPSHLEADAFWLFSAVMTGLE 333
K KE+++ I+ DLERLYPTGC + F+ P K+L VL W+ LH DT YRQGMHE+ APL+ L + AA RA D L GE+ DAT +LE D FWLF VM ++
Sbjct: 136 KDKELLEEIRQDLERLYPTGCDDFFMEPTVSKVLQGVLFTWSKLHPDTSYRQGMHELAAPLLYCLHADATAANRARTSQPPALDEAAVLIGEALKHVFDAT----YLEHDLFWLFERVMRDMK 254
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A4P9XIN8_9FUNG (Rab-GTPase-TBC domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XIN8_9FUNG) HSP 1 Score: 95.1 bits (235), Expect = 2.720e-20 Identity = 59/171 (34.50%), Postives = 93/171 (54.39%), Query Frame = 1
Query: 10 EMMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADHETSL-AGESDATPAPSHLEADAFWLFSAVMTGLEGFYEHGGVVSDRRRPAGGGVGGGRGVDSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQV 519
E+ IK D++R +P +F PA Q+ + +L ++ +H + YRQGMHE+LAP++L +++E A + D + L A + AT +E DAF LFSAVM + +YE ++ RPA GG +P++ + R+ L+E D +L HL L I PQ+
Sbjct: 100 ELRRIIKQDVDRTFPDK--PYFRTPAAQERMTDILFVYCKIHHEVSYRQGMHELLAPILLVVDEESVDAAQCTDEKEPLVAAQIAATLDSRFVEHDAFVLFSAVMATAKQWYE----FTEEPRPARGGKMANS--STPILRISHRIHHELLKEIDQDLYNHLEELTIEPQI 262
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A6A6RI33_9PLEO (RabGAP/TBC n=1 Tax=Massarina eburnea CBS 473.64 TaxID=1395130 RepID=A0A6A6RI33_9PLEO) HSP 1 Score: 96.7 bits (239), Expect = 4.680e-20 Identity = 66/171 (38.60%), Postives = 91/171 (53.22%), Query Frame = 1
Query: 25 IKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADH---ETSLAGESDATPAPSHLEADAFWLFSAVMTGLEGFYEHGGVVSDRRRPAGGGVGGGRGVDSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQVNLL 528
I D+ER P +F PA Q ++L VL +W +H GYRQGMHE+LAPL+ +E++ A T+ + H E +L DA ++E D+F LFSA+M + FY PA G D+P+I C R+ L ADPEL HL +L+I PQ+ LL
Sbjct: 114 IFQDIERCMPDNT--YFRQPATQNMMLDVLFVWCKMHPQIGYRQGMHEILAPLLWVVERD-AVDTKGSGHGEMEQTLVDLLDA----KYIEHDSFTLFSAIMQTAQTFYA----------PAETGPSM---KDTPMIARCSRIFERYLSRADPELAAHLTNLEIVPQIFLL 264
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A7D8URE4_9HELO (TBC1 domain family member 5 n=1 Tax=Lachnellula cervina TaxID=1316786 RepID=A0A7D8URE4_9HELO) HSP 1 Score: 96.7 bits (239), Expect = 4.760e-20 Identity = 62/179 (34.64%), Postives = 97/179 (54.19%), Query Frame = 1
Query: 7 KEMMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADHETSLAGESDATPAP----SHLEADAFWLFSAVMTGLEGFYEHGGVVSDRRRPAGG-GVGGGRGVDSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQVNLL 528
+E+ I D++R P E+F P Q++LL +L ++ ++ D GYRQGMHEVLAP++ A+E++ D + S ESD S++E DAF + S +M + FYE G D+R A +G + SP++E K++ L DPEL KHL +++ PQ+ L+
Sbjct: 147 EEIRAEIYQDVQRCMPEV--EYFRRPETQRMLLDILFVFCKINQDVGYRQGMHEVLAPILWAVEEDAIEY----DSQNSAGSESDLIMKEILNRSYIEHDAFTILSLIMRSAKSFYELG--EPDKRSSASSTAIGTQQQGASPIVERSKQIHEVYLARLDPELAKHLTDIEVLPQIFLI 317
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A8H3JAC5_9LECA (Rab-GAP TBC domain-containing protein n=1 Tax=Alectoria fallacina TaxID=1903189 RepID=A0A8H3JAC5_9LECA) HSP 1 Score: 96.3 bits (238), Expect = 6.320e-20 Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = 1
Query: 7 KEMMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADHETSLAGESDATPAPSHLEADAFWLFSAVMTGLEGFYEHGGVVSDRRRPAGGGVGGGRGVDSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQVNLL 528
+E+ I D+ER P +F P Q +LL +L ++ L+ D GYRQGMHEVLAP++ + ++ + L G + A+ ++E DAF LF A+M ++ FYE G PA G+ +SP++E KR+ L ADPEL +HL ++I PQ+ L+
Sbjct: 64 EELRAEIFQDVERCMPENL--YFREPHTQNMLLDILFIYCKLNRDIGYRQGMHEVLAPVLWVVSRDAIDSQSLGPDHADLDGLTLASLDNRYVEHDAFTLFGAIMQTVKTFYEMG----SNNEPATTGLLN----NSPIVERSKRIHENYLHHADPELAEHLTAIEILPQIFLI 227
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Match: A0A7S0ZQN0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZQN0_NOCSC) HSP 1 Score: 95.1 bits (235), Expect = 1.000e-19 Identity = 67/178 (37.64%), Postives = 95/178 (53.37%), Query Frame = 1
Query: 10 EMMDTIKADLERLYPTGC-GEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMHEVLAPLVLALEKEVAAATRAADHETSLAGESDATP---APSHLEADAFWLFSAVMTGLEGFYEHGGVVSDRRRPAGGGVGGGRGV-DSPVIEMCKRLQGPRLREADPELQKHLAHLDISPQVNLL 528
E+++TI DL+RLY +G F+ RQ L+ SVL +W+ H YRQGMHE+LA +VL LE++ A A D E S+ G A A H E DAF +F +M +E FY V ++ +G V D+P++ C R+Q RLR + + + L L I+PQV L
Sbjct: 105 ELVETIDCDLQRLYISGTDASFFMVEGRQSLMRSVLFVWSVSHQSLSYRQGMHELLALIVLVLERD-ADVLSARDKELSVDGHGHALSMLTAREHNEEDAFVMFERLMKHMEPFYA---VCNEL-------IGNVEKVQDTPLVVSCHRVQTVRLRSVEEPVSQMLDDLGIAPQVYCL 271 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184815.4983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig184815.4983.1 >prot_H-elongata_contig184815.4983.1 ID=prot_H-elongata_contig184815.4983.1|Name=mRNA_H-elongata_contig184815.4983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp MMDTIKADLERLYPTGCGEHFLAPARQKLLLSVLSLWADLHVDTGYRQGMback to top mRNA from alignment at H-elongata_contig184815:302..925+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig184815.4983.1 ID=mRNA_H-elongata_contig184815.4983.1|Name=mRNA_H-elongata_contig184815.4983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig184815:302..925+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig184815:302..925+ >mRNA_H-elongata_contig184815.4983.1 ID=mRNA_H-elongata_contig184815.4983.1|Name=mRNA_H-elongata_contig184815.4983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig184815:302..925+ (Himanthalia elongata Himel1 dioecious)back to top |