mRNA_H-elongata_contig184784.4981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184784.4981.1
Unique NamemRNA_H-elongata_contig184784.4981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184784.4981.1 vs. uniprot
Match: A0A6H5K9U8_9PHAE (Autophagy-related protein 9 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.740e-16
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MYMFLFLLYWVWSMLALGASLRDASDMHHLYTSRLGISAVDMHTIEWSEV 150
            MYM LFL+YW WS+L+  +SLRDA+DMHHLYT+RL IS  D+HTIEWSEV
Sbjct:  106 MYMVLFLVYWAWSLLSFWSSLRDATDMHHLYTTRLRISRTDLHTIEWSEV 155
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BLAST of mRNA_H-elongata_contig184784.4981.1 vs. uniprot
Match: D7FZF2_ECTSI (Autophagy-related protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 6.740e-16
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MYMFLFLLYWVWSMLALGASLRDASDMHHLYTSRLGISAVDMHTIEWSEV 150
            MYM LFL+YW WS+L+  +SLRDA+DMHHLYT+RL IS  D+HTIEWSEV
Sbjct:  115 MYMVLFLVYWAWSLLSFWSSLRDATDMHHLYTTRLRISRTDLHTIEWSEV 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184784.4981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9U8_9PHAE6.740e-1672.00Autophagy-related protein 9 n=1 Tax=Ectocarpus sp.... [more]
D7FZF2_ECTSI6.740e-1672.00Autophagy-related protein 9 n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184784contigH-elongata_contig184784:587..736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog2880.D7FZF2
Preferred nameATG9A
KEGG koko:K02349,ko:K17907,ko:K19672
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04137,ko04138,ko04140,map04136,map04137,map04138,map04140
GOsGO:0000003,GO:0000045,GO:0000139,GO:0000272,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0000421,GO:0000422,GO:0001817,GO:0001818,GO:0001894,GO:0001932,GO:0001934,GO:0002165,GO:0002376,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007586,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009251,GO:0009267,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009628,GO:0009653,GO:0009791,GO:0009886,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010498,GO:0010562,GO:0010604,GO:0010623,GO:0010646,GO:0010647,GO:0010648,GO:0010669,GO:0012501,GO:0012505,GO:0012506,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016052,GO:0016192,GO:0016236,GO:0016237,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0019954,GO:0022411,GO:0022600,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030054,GO:0030154,GO:0030163,GO:0030277,GO:0030587,GO:0030659,GO:0031090,GO:0031152,GO:0031153,GO:0031224,GO:0031288,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032006,GO:0032007,GO:0032258,GO:0032268,GO:0032270,GO:0032479,GO:0032480,GO:0032501,GO:0032502,GO:0032588,GO:0032648,GO:0032688,GO:0032872,GO:0032874,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034497,GO:0034599,GO:0034613,GO:0034727,GO:0035069,GO:0035096,GO:0040011,GO:0042175,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042331,GO:0042592,GO:0042594,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043410,GO:0043632,GO:0043933,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044257,GO:0044260,GO:0044262,GO:0044264,GO:0044265,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0044804,GO:0044805,GO:0045087,GO:0045937,GO:0046328,GO:0046330,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048707,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0055037,GO:0055114,GO:0060033,GO:0060249,GO:0060255,GO:0060729,GO:0061709,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070302,GO:0070304,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0080090,GO:0080134,GO:0080135,GO:0090382,GO:0090702,GO:0097708,GO:0098542,GO:0098588,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1902533,GO:1903008,GO:1905037
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG2173@1,KOG2173@2759
EC2.7.7.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029,ko03036,ko03400,ko04131
Hectar predicted targeting categorysignal peptide
Exons1
Model size150
Cds size150
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.4067104-CDS-H-elongata_contig184784:586..7361622930057.4067104-CDS-H-elongata_contig184784:586..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184784 587..736 +
1691679264.1412435-CDS-H-elongata_contig184784:586..7361691679264.1412435-CDS-H-elongata_contig184784:586..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184784 587..736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184784.4981.1prot_H-elongata_contig184784.4981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184784 587..736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184784.4981.1

>prot_H-elongata_contig184784.4981.1 ID=prot_H-elongata_contig184784.4981.1|Name=mRNA_H-elongata_contig184784.4981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MYMFLFLLYWVWSMLALGASLRDASDMHHLYTSRLGISAVDMHTIEWSEV
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mRNA from alignment at H-elongata_contig184784:587..736+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184784.4981.1 ID=mRNA_H-elongata_contig184784.4981.1|Name=mRNA_H-elongata_contig184784.4981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig184784:587..736+ (Himanthalia elongata Himel1 dioecious)
ATGTACATGTTCCTCTTTCTTCTATACTGGGTGTGGTCGATGCTGGCCCT
CGGGGCGTCCCTAAGAGACGCATCAGACATGCACCATCTCTACACCTCGC
GGCTTGGGATTTCAGCCGTGGACATGCATACCATCGAGTGGAGCGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig184784:587..736+

>mRNA_H-elongata_contig184784.4981.1 ID=mRNA_H-elongata_contig184784.4981.1|Name=mRNA_H-elongata_contig184784.4981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig184784:587..736+ (Himanthalia elongata Himel1 dioecious)
ATGTACATGTTCCTCTTTCTTCTATACTGGGTGTGGTCGATGCTGGCCCT
CGGGGCGTCCCTAAGAGACGCATCAGACATGCACCATCTCTACACCTCGC
GGCTTGGGATTTCAGCCGTGGACATGCATACCATCGAGTGGAGCGAGGTA
ATGTACATGTTCCTCTTTCTTCTATACTGGGTGTGGTCGATGCTGGCCCT
CGGGGCGTCCCTAAGAGACGCATCAGACATGCACCATCTCTACACCTCGC
GGCTTGGGATTTCAGCCGTGGACATGCATACCATCGAGTGGAGCGAGGTA
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