mRNA_H-elongata_contig184671.4977.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A6H5JRT4_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRT4_9PHAE) HSP 1 Score: 258 bits (659), Expect = 1.010e-77 Identity = 120/165 (72.73%), Postives = 137/165 (83.03%), Query Frame = 1
Query: 1 LIDPHHKLALP---LPDGSFLQVDSQLPGQMLNDGTPTKLYSFSLGRTWHNNSTSVEIAAAVEARKLARRNWQGRRSLYLDFEDTPLFPGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSCENCHGSFRYSKVVRRG 486
L D HH+ P LP GSFLQVDS+LPG L+DGTPTKLYS SLGR +HN++ S E+ AAV+A+KLARR+WQGRRSLYL FEDTPLFPGWGTHFAYVY GTPPQRVSVIIDTGSHFTAFPC+ C NCGSHTDPHW+ KS++S IV+CE+CHGSFR + R G
Sbjct: 33 LSDRHHRHTAPTVGLPGGSFLQVDSELPGPNLDDGTPTKLYSLSLGRAFHNHTESAELTAAVDAKKLARRDWQGRRSLYLSFEDTPLFPGWGTHFAYVYAGTPPQRVSVIIDTGSHFTAFPCSGCKNCGSHTDPHWDQSKSTSSHIVTCEDCHGSFRCQRDKRCG 197
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A6H5LNK8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LNK8_9PHAE) HSP 1 Score: 196 bits (499), Expect = 3.900e-57 Identity = 92/150 (61.33%), Postives = 119/150 (79.33%), Query Frame = 1
Query: 25 ALPLPDGSFLQVDSQLPGQMLNDGTPTKLYSFSLGRTWHNNSTSVEIAAAVEARKLARRNWQGRRSLY-LDFEDTPLFPGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSC---ENCHGSFR 462
AL L DGS L+VD +LPG L++GTPTKLYS SLGR H++ S ++A+A++ + RR W GRRSLY + FE+TPLF G+GTHFAY+Y GTPPQR SVII+TGSHF+AFPC+EC NCG+HTDP+W+ +SST+ IV+C E CHG++R
Sbjct: 27 ALNLRDGSVLEVDRELPGPNLDNGTPTKLYSLSLGRVRHDHMASADLASAMD---VMRRGWHGRRSLYTMSFEETPLFRGYGTHFAYIYAGTPPQRASVIINTGSHFSAFPCSECKNCGNHTDPYWDPSQSSTAHIVTCDETERCHGAYR 173
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A835ZHP7_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHP7_9STRA) HSP 1 Score: 117 bits (294), Expect = 8.710e-28 Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 238 EDTPLFPGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSCENCHGSF 459
E+ PL PG+GTH AYVYVGTPPQRVSVI+DTGSHFTAFPC C CG HTD +W+ SST+ + C +CHG+F
Sbjct: 4 EEVPLIPGYGTHIAYVYVGTPPQRVSVILDTGSHFTAFPCKGCKACGDHTDSYWDFDLSSTATLTKCPDCHGNF 77
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A7S2FBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBW1_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.030e-26 Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 241 DTPLFPGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSCENC 447
+ PL+ G GTH+ ++YVGTPPQRVSVI+DTGSH TAFPC C NCG HTDP+++ +KSSTS V C C
Sbjct: 31 EAPLWEGIGTHYVHIYVGTPPQRVSVIVDTGSHHTAFPCDGCKNCGKHTDPYFDPKKSSTSQTVGCSQC 99
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A7S2WCI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCI1_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.320e-25 Identity = 53/114 (46.49%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 130 RTWHNNSTSVEIAAAVEARKLARRNWQGRRSLYLDFEDTPLFPGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSCENCHGSFRYSK 471
+TW V+ + ++ AR + + F D PLF G GTH+A++YVGTPPQRVSVI+DTGSH TAFPC C CGSHTDPH+ SST+ + C C R K
Sbjct: 47 QTWTQAQEDVQRSRSLTGSTAARNSTE-------QFPDIPLFEGIGTHYAFIYVGTPPQRVSVIMDTGSHLTAFPCEGCKTCGSHTDPHFKPSGSSTNSYLPCNACKAGARCVK 153
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A835ZJF3_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF3_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.030e-24 Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 256 PGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSCENCHGSF 459
PG+GTH AY+YVGTPPQRVSVIIDTGSH TAFPC C CG HTDP+W+ SST+ I +C C G+F
Sbjct: 5 PGYGTHIAYLYVGTPPQRVSVIIDTGSHLTAFPCKGCQACGKHTDPYWDFAASSTAKITTCAACKGTF 72
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A7S3YC94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC94_HETAK) HSP 1 Score: 107 bits (268), Expect = 3.110e-24 Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 250 LFPGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSCENCHGS 456
L+PG+GTHFAYVYVGTPPQRVSVI+DTGSH+TAFPC C+ CGSHTDP+++ SST + C C +
Sbjct: 62 LYPGYGTHFAYVYVGTPPQRVSVIVDTGSHYTAFPCKGCSGCGSHTDPYFDLSSSSTGHQLGCHECQST 130
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A7S3HLQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLQ6_9STRA) HSP 1 Score: 107 bits (266), Expect = 9.980e-24 Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 238 EDTPLFPGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSC 438
E +PLFPG+GTHF Y YVGTPPQR S+IIDTGSH+TAFPC+ C CG HTD +WN ++SST I C
Sbjct: 59 ELSPLFPGYGTHFTYAYVGTPPQRQSLIIDTGSHYTAFPCSGCEGCGKHTDAYWNPKESSTKVIPQC 125
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A836CAB1_9STRA (Aspartic peptidase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB1_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.220e-22 Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 259 GWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSCENCHGSF 459
G GTH AYVYVGTPPQRVSVI+DTGS TAFPC C CG H DP+W+ SST+ + SC+ C G +
Sbjct: 1 GAGTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHEDPYWDRSASSTAQVSSCQQCVGDY 67
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Match: A0A7R9U4S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4S4_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.670e-22 Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1
Query: 244 TPLFPGWGTHFAYVYVGTPPQRVSVIIDTGSHFTAFPCAECNNCGSHTDPHWNHRKSSTSGIVSCE 441
TPLF G+GTHFAY++VGTP QRVSVI+DTGS TAFPC CN CGSHTDP++N KSS+S + C+
Sbjct: 35 TPLFQGYGTHFAYLWVGTPAQRVSVIVDTGSGITAFPCNGCNGCGSHTDPYFNADKSSSSHELQCQ 100 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184671.4977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig184671.4977.1 >prot_H-elongata_contig184671.4977.1 ID=prot_H-elongata_contig184671.4977.1|Name=mRNA_H-elongata_contig184671.4977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp LIDPHHKLALPLPDGSFLQVDSQLPGQMLNDGTPTKLYSFSLGRTWHNNSback to top mRNA from alignment at H-elongata_contig184671:648..1166+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig184671.4977.1 ID=mRNA_H-elongata_contig184671.4977.1|Name=mRNA_H-elongata_contig184671.4977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at H-elongata_contig184671:648..1166+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig184671:648..1166+ >mRNA_H-elongata_contig184671.4977.1 ID=mRNA_H-elongata_contig184671.4977.1|Name=mRNA_H-elongata_contig184671.4977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig184671:648..1166+ (Himanthalia elongata Himel1 dioecious)back to top |