mRNA_H-elongata_contig184535.4976.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184535.4976.1
Unique NamemRNA_H-elongata_contig184535.4976.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: D7G290_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G290_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 5.130e-34
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   46 RAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPS-DWHKLEVMINHVVELVLPWMLLLGRRQRSFAGTAQ 285
            R  LGAGLIK+RGDACW DLTCM+YHY+TQPNPNPLS YLHHLPS +WHK EV++NH+VELVLPW LLL R  R  AG+ Q
Sbjct:  141 RIMLGAGLIKVRGDACWWDLTCMEYHYQTQPNPNPLSWYLHHLPSVEWHKAEVVVNHIVELVLPWCLLLSRSPRCVAGSIQ 221          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: A0A6H5L4Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.520e-33
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 1
Query:   46 RAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPS-DWHKLEVMINHVVELVLPWMLLLGRRQRSFAGTAQ 285
            R  LGAGLIK+RGDACW DLTCM++HY+TQPNPNPLS YLHHLPS +WHK EV++NH+VELVLPW LLL R  R  AG+ Q
Sbjct:  182 RIMLGAGLIKVRGDACWWDLTCMEHHYQTQPNPNPLSWYLHHLPSAEWHKAEVVVNHIVELVLPWCLLLSRSPRCVAGSIQ 262          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: A0A2V7XHX0_9BACT (Membrane protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7XHX0_9BACT)

HSP 1 Score: 120 bits (300), Expect = 5.130e-30
Identity = 56/92 (60.87%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 PPTPYALSLCLLAPARAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAG 276
            PP+P  + L      R  LGAGLIKLRGD CW DLTCM +HYETQPNPNPLS Y HHLP+ +H  EV  NHVVEL+ PW +   RR R  AG
Sbjct:  100 PPSPIVILLLRWLIFRVMLGAGLIKLRGDPCWRDLTCMVFHYETQPNPNPLSWYFHHLPAWFHSFEVAFNHVVELIAPWFVFGPRRARHVAG 191          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: A0A2V7X804_9BACT (Membrane protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7X804_9BACT)

HSP 1 Score: 118 bits (295), Expect = 4.310e-29
Identity = 58/93 (62.37%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 PPTPYALSLCLLAPARAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAGT 279
            PP+P  ++L      R  LGAGLIKLRGD CW DLTCM +HYETQP PNPLS YLHHLP  +H+LEV  NHVVELV P  +   RR R  AGT
Sbjct:  151 PPSPIVIALLRWLIFRVMLGAGLIKLRGDPCWRDLTCMAFHYETQPVPNPLSWYLHHLPLWFHRLEVAFNHVVELVAPLFVFGPRRARHVAGT 243          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: A0A5B8MUY1_9CHLO (Lipase maturation factor n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MUY1_9CHLO)

HSP 1 Score: 117 bits (293), Expect = 1.570e-28
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   46 RAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAGTAQARLSLSL 306
            R  +GAGLIK+RGD+CW DLTCM++HYETQP PNP+S +LHHLPS WH  E   NH VELV P +L   RR R F G  Q    ++L
Sbjct:  241 RVMIGAGLIKIRGDSCWRDLTCMNFHYETQPLPNPISYFLHHLPSGWHAFETAANHTVELVAPLLLFCPRRMRIFGGLVQVGFQVAL 327          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: A0A8C4NAC1_EPTBU (Lipase maturation factor n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NAC1_EPTBU)

HSP 1 Score: 114 bits (284), Expect = 6.080e-28
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   46 RAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAGTAQ 285
            R  LGAGLIK+RGD CWHDLTCM YHYETQP PNPL+ ++H  P  +H  EV++NH +ELV+P+ LLLGRR R   G  Q
Sbjct:   12 RIMLGAGLIKIRGDKCWHDLTCMKYHYETQPVPNPLAYFMHQTPMWFHNFEVLVNHFIELVVPFFLLLGRRMRIAHGLLQ 91          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: A0A2V7VQR6_9BACT (Membrane protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7VQR6_9BACT)

HSP 1 Score: 113 bits (282), Expect = 7.990e-28
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 PPTPYALSLCLLAPARAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAG 276
            PP+P  + L      R   GAGLIK+RGD CW DLTC+ +HYETQPNPNPLS YLH LP  +H+LEV+ NH VELV P+ +   RR R  AG
Sbjct:   34 PPSPVVIGLLRWLTFRLMFGAGLIKVRGDPCWRDLTCLAFHYETQPNPNPLSWYLHQLPPWFHRLEVLFNHGVELVAPFFVFGPRRARHLAG 125          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: H3BP58_HUMAN (Lipase maturation factor (Fragment) n=2 Tax=Homininae TaxID=207598 RepID=H3BP58_HUMAN)

HSP 1 Score: 107 bits (268), Expect = 8.490e-28
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   46 RAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAGTAQ 285
            R  LGAGLIK+RGD CW DLTCMD+HYETQP PNP++ YLHH P  +H+ E + NH +EL++P+ L LGRR     G  Q
Sbjct:   49 RIMLGAGLIKIRGDRCWRDLTCMDFHYETQPMPNPVAYYLHHSPWWFHRFETLSNHFIELLVPFFLFLGRRACIIHGVLQ 128          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: A0A8C4N7C2_EPTBU (Lipase maturation factor n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4N7C2_EPTBU)

HSP 1 Score: 114 bits (284), Expect = 2.050e-27
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   46 RAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAGTAQ 285
            R  LGAGLIK+RGD CWHDLTCM YHYETQP PNPL+ ++H  P  +H  EV++NH +ELV+P+ LLLGRR R   G  Q
Sbjct:  197 RIMLGAGLIKIRGDKCWHDLTCMKYHYETQPVPNPLAYFMHQTPMWFHNFEVLVNHFIELVVPFFLLLGRRMRIAHGLLQ 276          
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Match: A0A2V7UNC2_9BACT (Membrane protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7UNC2_9BACT)

HSP 1 Score: 113 bits (283), Expect = 2.050e-27
Identity = 55/92 (59.78%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 PPTPYALSLCLLAPARAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNPLSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAG 276
            PP+P  + L      R  LGAGLIKLRGD CW DLTC+ YHY TQPNPNPLS YLH  P  +HK+EV+ NH+VELV+P+ L   RR R  AG
Sbjct:  150 PPSPVVILLLRWLVFRLMLGAGLIKLRGDPCWRDLTCLVYHYATQPNPNPLSWYLHQAPVWFHKVEVLFNHLVELVVPFFLFGPRRARLAAG 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184535.4976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G290_ECTSI5.130e-3474.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Y0_9PHAE2.520e-3372.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V7XHX0_9BACT5.130e-3060.87Membrane protein (Fragment) n=1 Tax=Acidobacteria ... [more]
A0A2V7X804_9BACT4.310e-2962.37Membrane protein n=1 Tax=Acidobacteria bacterium T... [more]
A0A5B8MUY1_9CHLO1.570e-2858.62Lipase maturation factor n=1 Tax=Chloropicon primu... [more]
A0A8C4NAC1_EPTBU6.080e-2862.50Lipase maturation factor n=1 Tax=Eptatretus burger... [more]
A0A2V7VQR6_9BACT7.990e-2857.61Membrane protein (Fragment) n=1 Tax=Acidobacteria ... [more]
H3BP58_HUMAN8.490e-2858.75Lipase maturation factor (Fragment) n=2 Tax=Homini... [more]
A0A8C4N7C2_EPTBU2.050e-2762.50Lipase maturation factor n=1 Tax=Eptatretus burger... [more]
A0A2V7UNC2_9BACT2.050e-2759.78Membrane protein n=1 Tax=Acidobacteria bacterium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184535contigH-elongata_contig184535:363..1037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue2.3e-29
Seed eggNOG ortholog2880.D7G290
Preferred nameLMF1
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006807,GO:0006810,GO:0006888,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0031323,GO:0031984,GO:0032501,GO:0032940,GO:0033036,GO:0033578,GO:0034381,GO:0034382,GO:0034645,GO:0036211,GO:0042175,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046486,GO:0046903,GO:0046907,GO:0048193,GO:0050789,GO:0050790,GO:0050794,GO:0051004,GO:0051006,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051604,GO:0051641,GO:0051649,GO:0060191,GO:0060193,GO:0061365,GO:0062012,GO:0065007,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071830,GO:0080090,GO:0090181,GO:0090207,GO:0097006,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein glycosylation in Golgi
EggNOG OGs28KNS@1,2QT4H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.139528-CDS-H-elongata_contig184535:362..4861622930057.139528-CDS-H-elongata_contig184535:362..486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184535 363..486 -
1691679264.038496-CDS-H-elongata_contig184535:362..4861691679264.038496-CDS-H-elongata_contig184535:362..486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184535 363..486 -
1622930057.152787-CDS-H-elongata_contig184535:852..10371622930057.152787-CDS-H-elongata_contig184535:852..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184535 853..1037 -
1691679264.0500357-CDS-H-elongata_contig184535:852..10371691679264.0500357-CDS-H-elongata_contig184535:852..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184535 853..1037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184535.4976.1prot_H-elongata_contig184535.4976.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184535 363..1037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184535.4976.1

>prot_H-elongata_contig184535.4976.1 ID=prot_H-elongata_contig184535.4976.1|Name=mRNA_H-elongata_contig184535.4976.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
PPTPYALSLCLLAPARAKLGAGLIKLRGDACWHDLTCMDYHYETQPNPNP
LSRYLHHLPSDWHKLEVMINHVVELVLPWMLLLGRRQRSFAGTAQARLSL
SLF
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mRNA from alignment at H-elongata_contig184535:363..1037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184535.4976.1 ID=mRNA_H-elongata_contig184535.4976.1|Name=mRNA_H-elongata_contig184535.4976.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig184535:363..1037- (Himanthalia elongata Himel1 dioecious)
CCTCCCACCCCCTATGCTCTCTCCCTGTGCCTCCTTGCCCCTGCGCGCGC AAAGCTGGGAGCAGGGCTGATAAAGCTTCGCGGGGATGCTTGCTGGCACG ACCTGACGTGCATGGATTACCACTACGAGACGCAGCCGAACCCCAACCCT TTGTCCCGCTACCTGCACCACTTGCCTTCTGATTGGTGAGCACGGATGGG ACAGAGACCAAAATGGGATGGTGGGGAGAGCTACCGGGATTGAAACCTCG CCGGTCTCGAGCTCTTGGACGTCATTTAATATCGGTTTGAATAATGAATA TTTCATCCCTATTTCCGACTCTTCTATTTTCGTCTCGGAGAAAGGATAGC AGTGGCGGCGACGGCCTTTCCATTCTCGAACATCAACGAGAGTGTGCGAT GACGGGCAGCATCCTTTGTTTAGTTTTCCTTCCACCGTTAAGGTCGACGA CGCCTTCTCGTCCAAGCTTATGTGCGCTGAATATCTAAATCATTATGTGT ATATATAGCTATATATTATGTGTGTATATTATGCGCATACTATCTTCGCA GGCACAAATTGGAGGTCATGATCAACCACGTAGTGGAGCTGGTCCTTCCG TGGATGCTGCTCCTGGGCCGACGGCAGCGGTCTTTTGCTGGCACCGCGCA GGCACGCCTTTCTCTTTCCCTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig184535:363..1037-

>mRNA_H-elongata_contig184535.4976.1 ID=mRNA_H-elongata_contig184535.4976.1|Name=mRNA_H-elongata_contig184535.4976.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig184535:363..1037- (Himanthalia elongata Himel1 dioecious)
CCTCCCACCCCCTATGCTCTCTCCCTGTGCCTCCTTGCCCCTGCGCGCGC
AAAGCTGGGAGCAGGGCTGATAAAGCTTCGCGGGGATGCTTGCTGGCACG
ACCTGACGTGCATGGATTACCACTACGAGACGCAGCCGAACCCCAACCCT
TTGTCCCGCTACCTGCACCACTTGCCTTCTGATTGCCTCCCACCCCCTAT
GCTCTCTCCCTGTGCCTCCTTGCCCCTGCGCGCGCAAAGCTGGGAGCAGG
GCTGATAAAGCTTCGCGGGGATGCTTGCTGGCACGACCTGACGTGCATGG
ATTACCACTACGAGACGCAGCCGAACCCCAACCCTTTGTCCCGCTACCTG
CACCACTTGCCTTCTGATTGGCACAAATTGGAGGTCATGATCAACCACGT
AGTGGAGCTGGTCCTTCCGTGGATGCTGCTCCTGGGCCGACGGCAGCGGT
CTTTTGCTGGCACCGCGCAGGCACGCCTTTCTCTTTCCCTCTTCGCACAA
ATTGGAGGTCATGATCAACCACGTAGTGGAGCTGGTCCTTCCGTGGATGC
TGCTCCTGGGCCGACGGCAGCGGTCTTTTGCTGGCACCGCGCAGGCACGC
CTTTCTCTTTCCCTCTTC
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