mRNA_H-elongata_contig184445.4975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184445.4975.1
Unique NamemRNA_H-elongata_contig184445.4975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: D7FQ59_ECTSI (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ59_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.520e-56
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAEGKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLHPTAKGAYTYWSMRTNA 339
            FFVVT+YVPNSG+KL RL YRT+EWDVAL+AYV  LEA+GKPVV+ GDLNVAHLDLDIYN GAKHL K+A TTKEER+SFDSWV  GKV DAFRRLHP A+GAYTYWS+RT A
Sbjct:  270 FFVVTVYVPNSGEKLVRLDYRTKEWDVALKAYVESLEAQGKPVVLNGDLNVAHLDLDIYNRGAKHLPKNAATTKEERDSFDSWVNGGKVSDAFRRLHPDAEGAYTYWSVRTGA 382          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: A0A835YNZ2_9STRA (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNZ2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.350e-45
Identity = 80/119 (67.23%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAEGKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGK---------VVDAFRRLHPTAKGAYTYWSMR 330
            FFVV LYVPNSGQ LERL YRT  WD ALRA+V  LEAEGKPV+V GDLNVAHLDLDIYNAGA HL K AG T  ER SFD+WV             V DAFR L+P A+G YTYWS R
Sbjct:  236 FFVVCLYVPNSGQSLERLEYRTTSWDPALRAFVAALEAEGKPVIVTGDLNVAHLDLDIYNAGAPHLKKQAGCTPAERASFDAWVNPAAAEAAPGAPHVRDAFRHLYPAARGCYTYWSAR 354          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: A0A7S1UUL0_9STRA (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUL0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.940e-40
Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAE-GKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLHPTAKGAYTYWSMR 330
            F +  +YVPNSGQKLERL YRTE+WD  L AY+  +E + G PV+  GDLNVAH +L+++N GAKHL K AG T EER SF + + +G  VDAFRRLHPTAKG Y+YWS R
Sbjct:   76 FSLCNVYVPNSGQKLERLSYRTEQWDKDLFAYMKSMETKRGVPVIWLGDLNVAHTNLEVWNDGAKHLAKQAGVTAEERASFQAMLDDGPFVDAFRRLHPTAKGHYSYWSQR 186          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: A0A7S1WYZ2_9CHLO (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WYZ2_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 1.210e-39
Identity = 69/110 (62.73%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAEGKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLHPTAKGAYTYWSMR 330
            FFVV  YVPNSG KLERL YRTE+WD  LR Y+  L A  KP ++ GDLNVAHLD+DIYN  +KH+ KSAGTT +ER SF   +  G  VD FR LHP+A G YTYWS+R
Sbjct:   18 FFVVGSYVPNSGMKLERLAYRTEQWDEDLRTYLAAL-ATRKPTMLLGDLNVAHLDIDIYNVQSKHVAKSAGTTPQERASFGELLGRG-WVDGFRHLHPSATGCYTYWSVR 125          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: L1JZE2_GUITC (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JZE2_GUITC)

HSP 1 Score: 144 bits (363), Expect = 5.780e-39
Identity = 71/111 (63.96%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAEGKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLH-PTAKGAYTYWSMR 330
            FFVV  YVPNSG+KL+RL +RT+ WD  +  Y+ +LEA GKPV+ CGDLNVAHLD DI+N GAKHLVKSAGTT EER+SF   ++EG  VD FR LH   AKG ++YWS+R
Sbjct:  285 FFVVATYVPNSGEKLQRLEFRTKLWDRKVVEYLKKLEASGKPVIWCGDLNVAHLDNDIWNVGAKHLVKSAGTTPEERDSFSKILEEG-YVDCFRHLHGEDAKGWFSYWSVR 394          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: A0A2R5GJJ6_9STRA (DNA-apurinic or apyrimidinic site lyase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJJ6_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.390e-38
Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    7 VVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAE-GKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLHPTAKGAYTYWSMRTN 336
            +V+LYVPN+GQ L+RL YRT+EWD+ LR+Y+  LEAE G P +VCGDLNVAH DLD++N  AKH+ K+AG+T EER SF  ++ E + VDAFR LH  AKG +TYWSMRTN
Sbjct:  261 LVSLYVPNAGQDLKRLEYRTKEWDLDLRSYLRDLEAETGLPCIVCGDLNVAHRDLDVWNPDAKHVPKTAGSTPEERASFTEFLHEMEYVDAFRYLHGDAKGHFTYWSMRTN 371          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: A0A7S4MKB2_9STRA (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MKB2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.680e-37
Identity = 69/111 (62.16%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAE-GKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLHPTAKGAYTYWSMR 330
            F +  LYVPNSGQKL+RLPYRTE+WD  L  ++ + E + G PVV  GDLNVAH  +D +N GAKHL KSAGTT EER SF+  ++ G  VDAFR LHP AKG YTYWS R
Sbjct:  169 FTLTGLYVPNSGQKLDRLPYRTEQWDSDLLQFMKQKEKDRGLPVVWLGDLNVAHTGMDTWNEGAKHLSKSAGTTPEERASFERQLEAG-FVDAFRELHPDAKGHYTYWSQR 278          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: A0A7S0HRD4_9CRYP (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HRD4_9CRYP)

HSP 1 Score: 139 bits (351), Expect = 7.030e-37
Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAEGKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLH-PTAKGAYTYWSMR 330
            F VV  YVPNSG+KL+RL +RT+ WD  +  Y+ +LE  GKPV+ CGDLNVAHLD DI+N GAKHLVKSAGTT EER+SF   ++EG  VD FR LH   A+G Y+YWS+R
Sbjct:  341 FCVVATYVPNSGEKLQRLDFRTKMWDRKVVEYLKKLEESGKPVIWCGDLNVAHLDNDIWNIGAKHLVKSAGTTPEERDSFSKILEEG-YVDCFRHLHGEEARGWYSYWSVR 450          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: A0A7S0Z7B3_9CHLO (DNA-(apurinic or apyrimidinic site) endonuclease (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z7B3_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 7.500e-37
Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAEGKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLHPTAKGAYTYWSMR 330
            F+VV  YVPNSGQ L+RL YR +EW+  +RA++  LE++GKPV+  GDLNVAHLD DI+N GA H+ KSAGTT  ERE+F   +++   VDAFR+ H  A G +++WS R
Sbjct:  172 FYVVMAYVPNSGQDLKRLDYRIDEWERDMRAHLAHLESKGKPVLYIGDLNVAHLDADIWNVGAPHIKKSAGTTPRERETFGVMLEKNAFVDAFRKFHADATGWFSFWSQR 281          
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Match: A0A7R9WF57_9STRA (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WF57_9STRA)

HSP 1 Score: 132 bits (333), Expect = 7.990e-37
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAE-GKPVVVCGDLNVAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLHPTAKGAYTYWSMR 330
            F +  LYVPNSGQKL+RL YRTEEWD  L  ++ + E + G PV+  GDLNVAH  ++ +N GAKHL KSAGTT EER SF+  ++ G  VDAFR LHP A+G YTYWS R
Sbjct:   35 FTLSALYVPNSGQKLDRLQYRTEEWDSDLLDFMQQREKDRGAPVIWLGDLNVAHTGMETWNEGAKHLAKSAGTTPEERASFERQLEAG-YVDAFRELHPDARGQYTYWSQR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184445.4975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ59_ECTSI1.520e-5679.65DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A835YNZ2_9STRA4.350e-4567.23DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S1UUL0_9STRA1.940e-4061.26DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S1WYZ2_9CHLO1.210e-3962.73DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
L1JZE2_GUITC5.780e-3963.96DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A2R5GJJ6_9STRA1.390e-3863.06DNA-apurinic or apyrimidinic site lyase n=1 Tax=Ho... [more]
A0A7S4MKB2_9STRA6.680e-3762.16DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S0HRD4_9CRYP7.030e-3762.16DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S0Z7B3_9CHLO7.500e-3755.45DNA-(apurinic or apyrimidinic site) endonuclease (... [more]
A0A7R9WF57_9STRA7.990e-3759.46DNA-(apurinic or apyrimidinic site) endonuclease n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184445contigH-elongata_contig184445:468..1130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue5e-46
Seed eggNOG ortholog2880.D7FQ59
Preferred nameARP
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01142,ko:K01930,ko:K10771
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,ko03410,map00790,map01100,map01523,map03410
KEGG ModuleM00296
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006289,GO:0006355,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009295,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016796,GO:0016895,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033554,GO:0033683,GO:0034641,GO:0042578,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
EC3.1.11.2,4.2.99.18,6.3.2.17
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.0850627-CDS-H-elongata_contig184445:467..6451622930057.0850627-CDS-H-elongata_contig184445:467..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184445 468..645 -
1691679264.0127356-CDS-H-elongata_contig184445:467..6451691679264.0127356-CDS-H-elongata_contig184445:467..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184445 468..645 -
1622930057.101355-CDS-H-elongata_contig184445:969..11301622930057.101355-CDS-H-elongata_contig184445:969..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184445 970..1130 -
1691679264.0253758-CDS-H-elongata_contig184445:969..11301691679264.0253758-CDS-H-elongata_contig184445:969..1130Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184445 970..1130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184445.4975.1prot_H-elongata_contig184445.4975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184445 468..1130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184445.4975.1

>prot_H-elongata_contig184445.4975.1 ID=prot_H-elongata_contig184445.4975.1|Name=mRNA_H-elongata_contig184445.4975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
FFVVTLYVPNSGQKLERLPYRTEEWDVALRAYVGRLEAEGKPVVVCGDLN
VAHLDLDIYNAGAKHLVKSAGTTKEERESFDSWVKEGKVVDAFRRLHPTA
KGAYTYWSMRTNA
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mRNA from alignment at H-elongata_contig184445:468..1130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184445.4975.1 ID=mRNA_H-elongata_contig184445.4975.1|Name=mRNA_H-elongata_contig184445.4975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=663bp|location=Sequence derived from alignment at H-elongata_contig184445:468..1130- (Himanthalia elongata Himel1 dioecious)
TTCTTTGTGGTGACGCTCTACGTCCCGAACTCGGGACAAAAACTGGAGCG CCTGCCGTACCGCACCGAAGAGTGGGACGTGGCGTTGAGGGCCTACGTTG GCAGGCTCGAGGCCGAGGGGAAGCCGGTCGTAGTCTGCGGCGACCTGAAC GTCGCCCACCTGTGAGTCAAGTCAGTCGGGTTGCGCCGTTATGCATCCGC GGACACTTCGTGACGCGGGAGTTTCTTCTGTTGGAAGGCTGTACGGTAGC CGCTGCGTAGGTTTCACTATGCTTAGTTATTAGGCTTCCGTATCCTCTGT TCTTGCCGCCGACTCTACTTTACTGTACCAGGTAGTTTTCATGCACAAAA GTACAAGAAAAGGTCAACATAGCTAATAGCTTTATTAAAAAAAAATTGCG TCGGCGTCGGAGAGTCACAATGACGTCACAGACACGCCTCCTCCCGATAT AAAACTGTCTCCCCTCTTTCCCGCCCTCTGCGCAGAGATCTGGATATTTA CAACGCTGGGGCCAAGCACTTGGTCAAGTCTGCCGGTACAACAAAGGAAG AGCGAGAATCGTTCGACTCGTGGGTGAAGGAGGGCAAGGTCGTTGACGCG TTCCGAAGGCTACACCCGACCGCCAAGGGGGCCTACACCTACTGGAGCAT GCGGACCAACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig184445:468..1130-

>mRNA_H-elongata_contig184445.4975.1 ID=mRNA_H-elongata_contig184445.4975.1|Name=mRNA_H-elongata_contig184445.4975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig184445:468..1130- (Himanthalia elongata Himel1 dioecious)
TTCTTTGTGGTGACGCTCTACGTCCCGAACTCGGGACAAAAACTGGAGCG
CCTGCCGTACCGCACCGAAGAGTGGGACGTGGCGTTGAGGGCCTACGTTG
GCAGGCTCGAGGCCGAGGGGAAGCCGGTCGTAGTCTGCGGCGACCTGAAC
GTCGCCCACCTTTCTTTGTGGTGACGCTCTACGTCCCGAACTCGGGACAA
AAACTGGAGCGCCTGCCGTACCGCACCGAAGAGTGGGACGTGGCGTTGAG
GGCCTACGTTGGCAGGCTCGAGGCCGAGGGGAAGCCGGTCGTAGTCTGCG
GCGACCTGAACGTCGCCCACCTAGATCTGGATATTTACAACGCTGGGGCC
AAGCACTTGGTCAAGTCTGCCGGTACAACAAAGGAAGAGCGAGAATCGTT
CGACTCGTGGGTGAAGGAGGGCAAGGTCGTTGACGCGTTCCGAAGGCTAC
ACCCGACCGCCAAGGGGGCCTACACCTACTGGAGCATGCGGACCAACGCG
AGATCTGGATATTTACAACGCTGGGGCCAAGCACTTGGTCAAGTCTGCCG
GTACAACAAAGGAAGAGCGAGAATCGTTCGACTCGTGGGTGAAGGAGGGC
AAGGTCGTTGACGCGTTCCGAAGGCTACACCCGACCGCCAAGGGGGCCTA
CACCTACTGGAGCATGCGGACCAACGCG
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