mRNA_H-elongata_contig184411.4974.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: D7FN93_ECTSI (Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN93_ECTSI) HSP 1 Score: 149 bits (376), Expect = 9.500e-42 Identity = 74/114 (64.91%), Postives = 90/114 (78.95%), Query Frame = 1
Query: 1 QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
+++GGR+VVFRG+P+A +M+IGEAPGAEED+LG PFVGRSGQLLD +L A G DP+R+VY SNIVRRRP +NRTPT EE++FYLP LLEEI LVDP +IV LG
Sbjct: 155 EEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFVGRSGQLLDDMLRAVGFDPEREVYV-----------SNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLG 257
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A835YMS9_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS9_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.650e-37 Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = 1
Query: 10 GGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
GGRIVV+RG+P A++M++GEAPGA ED+ GKPFVGRSGQLLD IL AAG DP+ D+Y SNIVRRRP NR PT+ E+ +Y P LLEEIRLV+P II+T G
Sbjct: 79 GGRIVVYRGDPQAKLMVVGEAPGAMEDETGKPFVGRSGQLLDAILKAAGFDPETDLYV-----------SNIVRRRPPENRDPTTAEIAYYRPWLLEEIRLVNPAIIITTG 178
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A3M1EZS2_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EZS2_9CHLR) HSP 1 Score: 134 bits (337), Expect = 3.200e-37 Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 10 GGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
GG +V++RGNPAA++M+IGE PGAEED+L KPFVGRSGQLLDKIL A DP+ DVY +N+V+RRP NR PT EE+ FY P L EEIRLVDP II+ G
Sbjct: 49 GGNMVIYRGNPAAKLMVIGEGPGAEEDRLRKPFVGRSGQLLDKILRAVHFDPETDVYI-----------TNVVKRRPPENRDPTPEEINFYAPYLFEEIRLVDPKIIMLTG 148
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7C3BN30_9CHLR (Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BN30_9CHLR) HSP 1 Score: 129 bits (325), Expect = 1.200e-35 Identity = 64/114 (56.14%), Postives = 82/114 (71.93%), Query Frame = 1
Query: 1 QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
+Q GG IV++RGNPAA++M+IGE PGA ED+L KPFVGRSG+LLD+IL A +P++DVY SN+VRRRP NR P +E+ FY P L EEIRL+DP II+ +G
Sbjct: 27 EQWGGNIVIYRGNPAAKLMIIGEGPGANEDRLRKPFVGRSGKLLDQILSAVNFNPEQDVYI-----------SNVVRRRPPKNRDPLPKEIAFYAPYLFEEIRLLDPKIILLIG 129
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7S2V4W6_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W6_9STRA) HSP 1 Score: 130 bits (326), Expect = 3.020e-35 Identity = 67/113 (59.29%), Postives = 81/113 (71.68%), Query Frame = 1
Query: 10 GGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLD--PQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
GG +VVFRGNP R+M++GEAPG EEDK PFVG++GQLL+K+L AG D PQ +VY +N+V+RRP NNR PT EE+ FYLP+L EEIRLVDPDIIV G
Sbjct: 79 GGSVVVFRGNPRGRVMVVGEAPGEEEDKQKLPFVGKAGQLLEKMLTEAGFDTGPQGEVYI-----------TNLVKRRPPNNRNPTPEEVSFYLPLLQEEIRLVDPDIIVCAG 180
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7S3A2Z9_9RHOD (Type-4 uracil-DNA glycosylase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2Z9_9RHOD) HSP 1 Score: 127 bits (318), Expect = 2.890e-34 Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 1
Query: 7 EGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
+GGRIV +RGNP A++M++GE PG +ED GKPFVGRSG+LLDKIL + LDP+ DVY +N V+RRP +NR PT +E+E+YLP L EE+RLVDP +IV G
Sbjct: 54 DGGRIVHYRGNPRAKLMVVGEGPGEQEDIEGKPFVGRSGKLLDKILRSVELDPEEDVYV-----------TNTVKRRPKDNRDPTRDEIEWYLPYLSEEVRLVDPHVIVCSG 154
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A1W9W486_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9W486_9CHLR) HSP 1 Score: 124 bits (312), Expect = 1.340e-33 Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 1 QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
+ G +V++RG P A +M+IGEAPGAEEDK+GKPFVGRSGQLLDKIL A + + D+Y +N ++RRP NNR P EELE+Y P L EEIRLVDP II+ G
Sbjct: 31 ESTGSNMVIYRGYPKADLMIIGEAPGAEEDKIGKPFVGRSGQLLDKILQAVHFNIETDIYI-----------TNTLKRRPPNNRNPKQEELEYYFPFLAEEIRLVDPKIILLAG 133
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7C3CIK3_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3CIK3_9CHLR) HSP 1 Score: 124 bits (312), Expect = 1.530e-33 Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 10 GGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
G R+V++RGNP A ++++GE PGA ED+LGKP+VGRSGQLLDKIL AAG D Q VY +N V RRP +NR PT EL+FYLP LLE IR+VDP +I+ G
Sbjct: 34 GNRMVIYRGNPQADLLIVGEGPGANEDRLGKPYVGRSGQLLDKILEAAGFDSQNGVYV-----------TNTVFRRPPDNRDPTQAELDFYLPYLLELIRIVDPKVILLTG 133
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A7S2S1J0_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1J0_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.760e-33 Identity = 61/114 (53.51%), Postives = 84/114 (73.68%), Query Frame = 1
Query: 1 QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
++ GGR+V +RGNP A+++++GEAPGA ED+LG P+VGR+G+LLD+IL AAG D + DVY +N+V+RRP NR PT+ EL +Y P+LLEE+RLVDP I+V G
Sbjct: 44 EEFGGRVVHYRGNPGAKVVVVGEAPGATEDELGVPYVGRAGKLLDQILTAAGFDVEEDVYF-----------TNVVKRRPPENRDPTAAELRYYSPLLLEELRLVDPWIVVCTG 146
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Match: A0A3A0G0K9_9BACT (Type-4 uracil-DNA glycosylase (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A3A0G0K9_9BACT) HSP 1 Score: 118 bits (296), Expect = 3.360e-31 Identity = 64/108 (59.26%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 19 IVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAAGLDPQRDVYSLMSQCSRVRWRSNIVRRRPANNRTPTSEELEFYLPMLLEEIRLVDPDIIVTLG 342
+V+FRGNPAAR+M+IGEAPGAEED KPFVG SGQLLD+IL + LDP DV +N V RRP NNR PT EE+ +Y P LLE IRLVDP II+ +G
Sbjct: 56 VVIFRGNPAARLMLIGEAPGAEEDIQRKPFVGPSGQLLDQILRSVDLDPATDVIV-----------TNAVFRRPPNNRVPTPEEIAWYRPFLLEIIRLVDPAIILLVG 152 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184411.4974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig184411.4974.1 >prot_H-elongata_contig184411.4974.1 ID=prot_H-elongata_contig184411.4974.1|Name=mRNA_H-elongata_contig184411.4974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp QQEGGRIVVFRGNPAARIMMIGEAPGAEEDKLGKPFVGRSGQLLDKILLAback to top mRNA from alignment at H-elongata_contig184411:581..1071- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig184411.4974.1 ID=mRNA_H-elongata_contig184411.4974.1|Name=mRNA_H-elongata_contig184411.4974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=491bp|location=Sequence derived from alignment at H-elongata_contig184411:581..1071- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig184411:581..1071- >mRNA_H-elongata_contig184411.4974.1 ID=mRNA_H-elongata_contig184411.4974.1|Name=mRNA_H-elongata_contig184411.4974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig184411:581..1071- (Himanthalia elongata Himel1 dioecious)back to top |