mRNA_H-elongata_contig184376.4972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184376.4972.1
Unique NamemRNA_H-elongata_contig184376.4972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184376.4972.1 vs. uniprot
Match: A0A0C2FEX7_9BILA (Uncharacterized protein (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2FEX7_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 1.160e-6
Identity = 37/115 (32.17%), Postives = 57/115 (49.57%), Query Frame = 1 
Query:    1 RLGYDVIGLQETRRSGHSSFN---QAGYSVYCSGECGXXXXXKKGQGGVGLAIRTSIIRAARPPEFISDRLLRVTLELQGRAKAITFFVTYAPTETQNASNRDTFWTSMDRAVEE 336
            ++GYDVIGL ETRR  H   N     G  ++  G C       +G GGVG+ + T++       E ++ R+ R+ L   G   A+T FV YAPT + +    + F+  ++    E
Sbjct:    5 KIGYDVIGLTETRR--HQPLNATFDTGEELFL-GTC-----DSRGVGGVGVLVNTNLAINIDSFEQLTTRIGRLRLRRCGSMPAVTIFVAYAPTSSYDEEEIEAFYMDLENFYRE 111
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BLAST of mRNA_H-elongata_contig184376.4972.1 vs. uniprot
Match: W2SH60_NECAM (Uncharacterized protein n=1 Tax=Necator americanus TaxID=51031 RepID=W2SH60_NECAM)

HSP 1 Score: 52.8 bits (125), Expect = 2.310e-6
Identity = 33/112 (29.46%), Postives = 53/112 (47.32%), Query Frame = 1 
Query:    1 RLGYDVIGLQETRRSGHSSFNQAGYSVYCSGECGXXXXXKKGQGGVGLAIRTSIIRAARPPEFISDRLLRVTLELQGRAKAITFFVTYAPTETQNASNRDTFWTSMDRAVEE 336
            ++ YDVIGL ETRR                         K+G GGVG+ + TS+ +     E ++ R+ R+ +   G   A+T FVTYAPT + +    + F+  +++   E
Sbjct:   26 KIKYDVIGLTETRRR---------------------TCDKRGVGGVGVLVNTSMAKNIDSFEELTTRIGRLRMRRCGPTPALTIFVTYAPTSSYDEEEVEAFYLDLEKFYRE 116
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BLAST of mRNA_H-elongata_contig184376.4972.1 vs. uniprot
Match: A0A6J2YH64_SITOR (craniofacial development protein 2-like n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YH64_SITOR)

HSP 1 Score: 49.7 bits (117), Expect = 7.210e-5
Identity = 31/109 (28.44%), Postives = 53/109 (48.62%), Query Frame = 1 
Query:   13 DVIGLQETRRSGHSSFNQAGYSVYCSGECGXXXXXKKGQGGVGLAIRTSIIRAARPPEFISDRLLRVTLELQGRAKAITFFVTYAPTETQNASNRDTFWTSMDRAVEEV 339
            D+  + ET++ G   +    Y++  SG        K+G  GVGL I           E+ISDR+L VTL +    + I     YAP  +++ + R++F+  +  AV+ +
Sbjct:   20 DICSISETKKKGKGKYEIDDYTLIYSG----VSRDKRGHSGVGLLIDRKYKDHIEKEEYISDRILLVTLNVN--KENIHLISVYAPDISKDRAERESFYEELQEAVDRI 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184376.4972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0C2FEX7_9BILA1.160e-632.17Uncharacterized protein (Fragment) n=1 Tax=Ancylos... [more]
W2SH60_NECAM2.310e-629.46Uncharacterized protein n=1 Tax=Necator americanus... [more]
A0A6J2YH64_SITOR7.210e-528.44craniofacial development protein 2-like n=2 Tax=Si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184376contigH-elongata_contig184376:799..1140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.9091845-CDS-H-elongata_contig184376:798..11401622930056.9091845-CDS-H-elongata_contig184376:798..1140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184376 799..1140 -
1691679263.9427373-CDS-H-elongata_contig184376:798..11401691679263.9427373-CDS-H-elongata_contig184376:798..1140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184376 799..1140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184376.4972.1prot_H-elongata_contig184376.4972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184376 799..1140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184376.4972.1

>prot_H-elongata_contig184376.4972.1 ID=prot_H-elongata_contig184376.4972.1|Name=mRNA_H-elongata_contig184376.4972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
RLGYDVIGLQETRRSGHSSFNQAGYSVYCSGECGGENGGKKGQGGVGLAI
RTSIIRAARPPEFISDRLLRVTLELQGRAKAITFFVTYAPTETQNASNRD
TFWTSMDRAVEEVP
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mRNA from alignment at H-elongata_contig184376:799..1140-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184376.4972.1 ID=mRNA_H-elongata_contig184376.4972.1|Name=mRNA_H-elongata_contig184376.4972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig184376:799..1140- (Himanthalia elongata Himel1 dioecious)
CGACTGGGGTACGACGTTATCGGTCTCCAGGAAACCCGCCGCAGTGGACA
TTCATCCTTCAATCAGGCTGGCTACTCGGTATACTGCAGTGGTGAGTGCG
GTGGGGAAAATGGTGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATT
AGAACCTCCATCATACGTGCTGCACGCCCACCGGAGTTTATAAGTGATCG
CTTGCTAAGGGTTACGCTTGAACTACAGGGTCGAGCCAAGGCCATTACGT
TTTTTGTGACGTATGCCCCCACTGAAACACAGAATGCTAGTAATAGAGAT
ACATTCTGGACGAGCATGGATAGAGCTGTGGAGGAGGTACCT
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Coding sequence (CDS) from alignment at H-elongata_contig184376:799..1140-

>mRNA_H-elongata_contig184376.4972.1 ID=mRNA_H-elongata_contig184376.4972.1|Name=mRNA_H-elongata_contig184376.4972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig184376:799..1140- (Himanthalia elongata Himel1 dioecious)
CGACTGGGGTACGACGTTATCGGTCTCCAGGAAACCCGCCGCAGTGGACA
TTCATCCTTCAATCAGGCTGGCTACTCGGTATACTGCAGTGGTGAGTGCG
GTGGGGAAAATGGTGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATT
AGAACCTCCATCATACGTGCTGCACGCCCACCGGAGTTTATAAGTGATCG
CTTGCTAAGGGTTACGCTTGAACTACAGGGTCGAGCCAAGGCCATTACGT
TTTTTGTGACGTATGCCCCCACTGAAACACAGAATGCTAGTAATAGAGAT
ACATTCTGGACGAGCATGGATAGAGCTGTGGAGGAGGTACCTCGACTGGG
GTACGACGTTATCGGTCTCCAGGAAACCCGCCGCAGTGGACATTCATCCT
TCAATCAGGCTGGCTACTCGGTATACTGCAGTGGTGAGTGCGGTGGGGAA
AATGGTGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATTAGAACCTC
CATCATACGTGCTGCACGCCCACCGGAGTTTATAAGTGATCGCTTGCTAA
GGGTTACGCTTGAACTACAGGGTCGAGCCAAGGCCATTACGTTTTTTGTG
ACGTATGCCCCCACTGAAACACAGAATGCTAGTAATAGAGATACATTCTG
GACGAGCATGGATAGAGCTGTGGAGGAGGTACCT
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