mRNA_H-elongata_contig184332.4970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184332.4970.1
Unique NamemRNA_H-elongata_contig184332.4970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig184332.4970.1 vs. uniprot
Match: D7FWD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD2_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 9.150e-16
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 SSGAETALQARNPYDVANLGQLLGLTQEQSIRTVSDTPLAVIRRAEARKAR 153
            +SGAET L  R+P+DVANLGQLLGL+QEQS+R VSDTPLAV+RRAEARK R
Sbjct:  220 ASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGR 270
[Close]
BLAST of mRNA_H-elongata_contig184332.4970.1 vs. uniprot
Match: A0A182JDM2_9DIPT (Uncharacterized protein n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182JDM2_9DIPT)

HSP 1 Score: 53.1 bits (126), Expect = 8.640e-7
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 SSGAETALQARNPYDVANLGQLLGLTQEQSIRTVSDTPLAVIRRAEARK 147
            SSGA+ A + R+PYD+ANLG + GL++EQS R V D P  ++  AE R+
Sbjct:  187 SSGAKNAFELRSPYDIANLGLIFGLSEEQSKRAVRDVPNKILLAAEGRR 235
[Close]
BLAST of mRNA_H-elongata_contig184332.4970.1 vs. uniprot
Match: A7S216_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S216_NEMVE)

HSP 1 Score: 50.1 bits (118), Expect = 1.020e-5
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 SSGAETALQARNPYDVANLGQLLGLTQEQSIRTVSDTPLAVIRRAEARKA 150
            SSGA+  L  R PYDVANLG+LLGL QE++   VS    A++   EARKA
Sbjct:  189 SSGADGPLDLRGPYDVANLGELLGLKQEKAKSAVSRNIRALLYHVEARKA 238
[Close]
BLAST of mRNA_H-elongata_contig184332.4970.1 vs. uniprot
Match: A0A2D4BFJ1_PYTIN (Ribonuclease P protein subunit p30, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFJ1_PYTIN)

HSP 1 Score: 48.9 bits (115), Expect = 2.420e-5
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 SSGAETALQARNPYDVANLGQLLGLTQEQSIRTVSDTPLAVIRRAEARKAR 153
            SSG+   L  R+PYDV N+G L+GLT  Q++  VS+ PLAV+  AE R+ R
Sbjct:  175 SSGSTRDLFLRSPYDVINVGILMGLTYGQALDAVSNAPLAVMEHAEQRRGR 225
[Close]
BLAST of mRNA_H-elongata_contig184332.4970.1 vs. uniprot
Match: A0A182QJX9_9DIPT (Uncharacterized protein n=1 Tax=Anopheles farauti TaxID=69004 RepID=A0A182QJX9_9DIPT)

HSP 1 Score: 48.9 bits (115), Expect = 2.530e-5
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 SSGAETALQARNPYDVANLGQLLGLTQEQSIRTVSDTPLAVIRRAEARK 147
            SSGA  A Q R+PYD+ANLG + GL++EQS   +   P  ++  AE R+
Sbjct:  136 SSGASNAFQLRSPYDIANLGLIFGLSEEQSKEAIRGVPNRILLSAEGRR 184
[Close]
BLAST of mRNA_H-elongata_contig184332.4970.1 vs. uniprot
Match: A0A182ST08_9DIPT (Uncharacterized protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182ST08_9DIPT)

HSP 1 Score: 47.8 bits (112), Expect = 6.440e-5
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 SSGAETALQARNPYDVANLGQLLGLTQEQSIRTVSDTPLAVIRRAEARK 147
            SSGA+   Q R+PYD+ANLG + GL++EQS  ++   P  ++  AE R+
Sbjct:  127 SSGAKNPFQLRSPYDIANLGLIFGLSEEQSKESIRGVPNRILLSAEGRR 175
[Close]
BLAST of mRNA_H-elongata_contig184332.4970.1 vs. uniprot
Match: A0A1B6KHT3_9HEMI (Uncharacterized protein n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KHT3_9HEMI)

HSP 1 Score: 47.4 bits (111), Expect = 9.540e-5
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 SSGAETALQARNPYDVANLGQLLGLTQEQSIRTVSDTPLAVIRRAEARK 147
            SSGA   L+ R+PYD+ANLG L GL++EQ+  ++ +T  A+I RAE R+
Sbjct:  190 SSGATGYLKLRSPYDIANLGILFGLSEEQAKHSMLNTCRALILRAEGRR 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184332.4970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FWD2_ECTSI9.150e-1678.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A182JDM2_9DIPT8.640e-751.02Uncharacterized protein n=1 Tax=Anopheles atroparv... [more]
A7S216_NEMVE1.020e-556.00Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A2D4BFJ1_PYTIN2.420e-550.98Ribonuclease P protein subunit p30, putative n=1 T... [more]
A0A182QJX9_9DIPT2.530e-546.94Uncharacterized protein n=1 Tax=Anopheles farauti ... [more]
A0A182ST08_9DIPT6.440e-544.90Uncharacterized protein n=1 Tax=Anopheles maculatu... [more]
A0A1B6KHT3_9HEMI9.540e-551.02Uncharacterized protein n=2 Tax=Graphocephala atro... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184332contigH-elongata_contig184332:31..186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue4.4e-13
Seed eggNOG ortholog2880.D7FWD2
Preferred nameRPP30
KEGG koko:K03539,ko:K07881
KEGG Pathwayko03008,ko03013,ko04152,map03008,map03013,map04152
GOsGO:0000172,GO:0000294,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0042254,GO:0042274,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904
EggNOG free text desc.ribonuclease P activity
EggNOG OGsCOG1603@1,KOG2363@2759
EC3.1.26.5
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029,ko04031,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.7835004-CDS-H-elongata_contig184332:30..1861622930056.7835004-CDS-H-elongata_contig184332:30..186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184332 31..186 -
1691679263.9087415-CDS-H-elongata_contig184332:30..1861691679263.9087415-CDS-H-elongata_contig184332:30..186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184332 31..186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184332.4970.1prot_H-elongata_contig184332.4970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184332 31..186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184332.4970.1

>prot_H-elongata_contig184332.4970.1 ID=prot_H-elongata_contig184332.4970.1|Name=mRNA_H-elongata_contig184332.4970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
SSGAETALQARNPYDVANLGQLLGLTQEQSIRTVSDTPLAVIRRAEARKA
RR
back to top

mRNA from alignment at H-elongata_contig184332:31..186-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184332.4970.1 ID=mRNA_H-elongata_contig184332.4970.1|Name=mRNA_H-elongata_contig184332.4970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig184332:31..186- (Himanthalia elongata Himel1 dioecious)
AGCAGTGGGGCAGAGACGGCTCTCCAGGCGAGGAATCCTTATGACGTGGC
CAACCTTGGACAACTGTTGGGGTTGACCCAGGAGCAATCGATCCGAACCG
TGTCTGACACGCCGCTGGCGGTGATCCGCCGTGCGGAGGCTCGGAAGGCC
AGGCGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig184332:31..186-

>mRNA_H-elongata_contig184332.4970.1 ID=mRNA_H-elongata_contig184332.4970.1|Name=mRNA_H-elongata_contig184332.4970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig184332:31..186- (Himanthalia elongata Himel1 dioecious)
AGCAGTGGGGCAGAGACGGCTCTCCAGGCGAGGAATCCTTATGACGTGGC
CAACCTTGGACAACTGTTGGGGTTGACCCAGGAGCAATCGATCCGAACCG
TGTCTGACACGCCGCTGGCGGTGATCCGCCGTGCGGAGGCTCGGAAGGCC
AGGCGAAGCAGTGGGGCAGAGACGGCTCTCCAGGCGAGGAATCCTTATGA
CGTGGCCAACCTTGGACAACTGTTGGGGTTGACCCAGGAGCAATCGATCC
GAACCGTGTCTGACACGCCGCTGGCGGTGATCCGCCGTGCGGAGGCTCGG
AAGGCCAGGCGA
back to top