mRNA_H-elongata_contig184300.4969.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184300.4969.1
Unique NamemRNA_H-elongata_contig184300.4969.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.210e-21
Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 YGDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVMEV 213
            YG G WP L  YER E+  NGNY EP+ ISVRHGICGDPEQT  E +N YG  NS YPV   Y+EG ++E+
Sbjct:   63 YGRGEWPHLFSYERNEVHGNGNYYEPEEISVRHGICGDPEQTKAEGTNLYGQENSKYPVHGKYSEGGIIEI 133          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: D7G892_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G892_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.380e-21
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 YGDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVMEV 213
            YGDG WPLL+ Y +GEM  NGN+ E D IS RHGICGDP+Q A ES+N Y ++ S +  LET  EG V+++
Sbjct:   78 YGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQFALESTNAYSSSLSDWSALETLKEGGVLDI 148          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.470e-20
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 GDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVMEV 213
            GD  WP  +    GE A NGNY+E D ++ RHG+CGDPEQTA E SN+YG  NS YPVLETY EG ++EV
Sbjct:   42 GDQPWPHFN----GERAENGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSKYPVLETYAEGGILEV 107          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.730e-20
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 GDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVMEV 213
            GD  WP  +    GE A NGNY+E D ++ RHG+CGDPEQTA E SN+YG  NS YPVLETY EG ++EV
Sbjct:   71 GDQPWPHFN----GERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEV 136          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.090e-19
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 GDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVMEV 213
            GD  WP  +    GE A NGNY+E + ++ RHGICGDPEQTA ESSN+YG  NS YPV ETY EG ++EV
Sbjct:   74 GDKPWPHFN----GERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEV 139          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.820e-19
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 YGDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVMEV 213
            YGDG WPLL+ Y +GEM  NGN+ E D IS RHGICGDP+Q + ES+N Y ++ S +  LET  EG V+++
Sbjct:   78 YGDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQFSLESTNAYSSSLSDWSALETLKEGGVLDI 148          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 9.340e-19
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    4 GDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVME 210
            GD  WP  +    GE A NGNY+E + ++ RHGICGDPEQTA E SN+YG  NS YPVLETY EG ++E
Sbjct:   73 GDKPWPHFN----GERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILE 137          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.090e-18
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    4 GDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVME 210
            GD  WP  +    G+ A NGNY+E + ++ RHGICGDPEQTA E SN YG  NS YPVLETY EG ++E
Sbjct:   73 GDQPWPHFN----GDRAANGNYIESEEVAQRHGICGDPEQTAAEGSNLYGLENSNYPVLETYAEGGILE 137          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 8.040e-18
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    4 GDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRYGNANSYYPVLETYTEGSVMEV 213
            GD  WP    + +G  A NGNYLE D ++ RHGICGDPEQTA E  N+YG  N  YPVL TY EG V+EV
Sbjct:   78 GDKPWP----HYQGARAANGNYLESDEVAQRHGICGDPEQTAAEGDNKYGRENYNYPVLGTYAEGGVLEV 143          
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.130e-17
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 YGDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDP---EQTADESSNRYGNANSYYPVLETYTEGSVMEV 213
            YGDG +PL  VY++GEMA NGNY+EP  ISVRHG+CGDP   +Q   +  N Y   N  +PVL+ + +G  ME+
Sbjct:   44 YGDGWYPLRWVYDKGEMAPNGNYIEPQGISVRHGVCGDPKSGDQGGQDGENTYSTPNKDWPVLQEFKQGQSMEI 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184300.4969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JI36_9PHAE4.210e-2160.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G892_ECTSI5.380e-2156.34EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE3.470e-2060.00CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LD67_ECTSI3.730e-2060.00EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI1.090e-1960.00EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFL8_9PHAE4.820e-1954.93CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM92_ECTSI9.340e-1959.42EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE6.090e-1857.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF4_ECTSI8.040e-1858.57EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D7FU28_ECTSI1.130e-1751.35EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184300contigH-elongata_contig184300:265..1241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue3.6e-18
Seed eggNOG ortholog2880.D7FSZ8
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.7269068-CDS-H-elongata_contig184300:264..3871622930056.7269068-CDS-H-elongata_contig184300:264..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184300 265..387 +
1691679263.8751764-CDS-H-elongata_contig184300:264..3871691679263.8751764-CDS-H-elongata_contig184300:264..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184300 265..387 +
1622930056.745739-CDS-H-elongata_contig184300:1151..12411622930056.745739-CDS-H-elongata_contig184300:1151..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184300 1152..1241 +
1691679263.8936126-CDS-H-elongata_contig184300:1151..12411691679263.8936126-CDS-H-elongata_contig184300:1151..1241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184300 1152..1241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184300.4969.1prot_H-elongata_contig184300.4969.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184300 265..1241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184300.4969.1

>prot_H-elongata_contig184300.4969.1 ID=prot_H-elongata_contig184300.4969.1|Name=mRNA_H-elongata_contig184300.4969.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
YGDGAWPLLSVYERGEMATNGNYLEPDSISVRHGICGDPEQTADESSNRY
GNANSYYPVLETYTEGSVMEV
back to top

mRNA from alignment at H-elongata_contig184300:265..1241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184300.4969.1 ID=mRNA_H-elongata_contig184300.4969.1|Name=mRNA_H-elongata_contig184300.4969.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=977bp|location=Sequence derived from alignment at H-elongata_contig184300:265..1241+ (Himanthalia elongata Himel1 dioecious)
TATGGGGACGGAGCTTGGCCCCTGTTGAGCGTGTACGAGAGGGGAGAGAT GGCAACCAATGGCAACTACCTTGAGCCAGATTCGATCTCGGTTCGGCATG GGATTTGCGGAGATCCTGAACAGGTCAGTTATTGTTCTGGGACGAAAGCA AATAATTTCCTAATAATCTCTAGACCAACCCTTTCGTTCCTATCGGATGA ACCGCACCAATAATAGTGAGTGGCTGTGATGGCTCGGATGTGCAGAGTAT AATAATGTGGTTAAGTCTATCCACTCTCTGGTGCCAAATTTGGAGGCATT TCAACCTACGAATTCAATGTTAACAGACGCGCGGTGCCAGTGCTACGCGA TTTTCTATCTTACAAGTATCACGACTTTGATCGGCCCCCAAAATGGAATC AATCGCTGATAACCTGGTCGACCGCCTAACGCGGTGATGAGCCGGACGAG TTCGACTAGTGGCCCCTTCGGAACGAAGCACTCGAGGAGCTCCTTGGGTA TTAAATAAATGGTTCGAAGAGCGAGCGCTTACTTGTATTAAATAAATATG TGAACTCATTCCAACCCTCCGAACATCCACGCCTTCTTAGCGCCGTGAGA GGTGCAGTCCAAGGGACCACCCATCGTGAGGTTCTAATGTGTACATTAAT ACCACTCGATCGAGCGCATCATCAGCCATACATATCATCCTCGAAGACAC GCTATGTCCACATGGACACAGACCAATATATCGACGAACGTGTACCACAT CGCGCGCACGTTGAAGTTGTGACGGATATTTTTTTAGTGAGTCGAGATAT TGGCGATATTGCTGGTCCATAACGCTCATCATATTATTGTTGCCAACTTT CCTGCATGTTGTGTCCTTCACCGACTGCGACGTACAGACGGCTGACGAGA GCTCCAACAGATACGGCAATGCGAACAGCTACTACCCCGTACTCGAGACC TACACCGAGGGATCGGTTATGGAGGTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig184300:265..1241+

>mRNA_H-elongata_contig184300.4969.1 ID=mRNA_H-elongata_contig184300.4969.1|Name=mRNA_H-elongata_contig184300.4969.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig184300:265..1241+ (Himanthalia elongata Himel1 dioecious)
TATGGGGACGGAGCTTGGCCCCTGTTGAGCGTGTACGAGAGGGGAGAGAT
GGCAACCAATGGCAACTACCTTGAGCCAGATTCGATCTCGGTTCGGCATG
GGATTTGCGGAGATCCTGAACAGTATGGGGACGGAGCTTGGCCCCTGTTG
AGCGTGTACGAGAGGGGAGAGATGGCAACCAATGGCAACTACCTTGAGCC
AGATTCGATCTCGGTTCGGCATGGGATTTGCGGAGATCCTGAACAGACGG
CTGACGAGAGCTCCAACAGATACGGCAATGCGAACAGCTACTACCCCGTA
CTCGAGACCTACACCGAGGGATCGGTTATGGAGGTCACGGCTGACGAGAG
CTCCAACAGATACGGCAATGCGAACAGCTACTACCCCGTACTCGAGACCT
ACACCGAGGGATCGGTTATGGAGGTC
back to top