mRNA_H-elongata_contig18416.4964.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE) HSP 1 Score: 183 bits (465), Expect = 6.230e-48 Identity = 121/217 (55.76%), Postives = 137/217 (63.13%), Query Frame = 1
Query: 412 KALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKA-----------------PGILLHKLLEVLNRGATGGGGGRGRGVIGNSGRGKGSEQCPPGVVEDLLAMMEQLGQ 1011
++LPAM+VTYRLAGVDGEATEEVVDSL DSD+A DQDPE KF IARDIAE EGGL LLL LAQ P AG +V+ SP+ + S D WEVF+L V+LLRR CMLSANR+DLL+LKA PGILLH LLEVL RGA GGG G+ G G+++CPPGVVEDLLAMMEQLGQ
Sbjct: 7480 ESLPAMMVTYRLAGVDGEATEEVVDSLADSDSAADQDPEVKFGIARDIAE-------EGGLSLLLTLAQPP--------AGPSAAEEEVEN----SPEGLSASGSGD-------WEVFALAVKLLRRSCMLSANRSDLLSLKASACWCLHAAFFFVLFVAPGILLHHLLEVLQRGAAGGGRGQADGAAAAQLGAAGTDRCPPGVVEDLLAMMEQLGQ 7670
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI) HSP 1 Score: 162 bits (410), Expect = 1.250e-40 Identity = 101/166 (60.84%), Postives = 112/166 (67.47%), Query Frame = 1
Query: 412 KALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLLEVLNRGATGGGGGR 909
++LPAM+VTYRLAGVDGEATEEVVDSL DSD+A DQDPE KF IARDIAE EGGL LLL LAQ P G V+ SP+ A S D WEVF+L V+LLRR CMLSANR+DLL+LKAPGILLH LLEVL RGA GGG G+
Sbjct: 6479 ESLPAMMVTYRLAGVDGEATEEVVDSLADSDSAADQDPEVKFGIARDIAE-------EGGLSLLLTLAQPPA-----------GPSAAVEEEAAASPEGLAASGSGD-------WEVFALAVKLLRRSCMLSANRSDLLSLKAPGILLHHLLEVLQRGAAGGGRGQ 6619
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A835Z9Y3_9STRA (E3 ubiquitin-protein ligase UBR4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y3_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.230e-23 Identity = 88/202 (43.56%), Postives = 109/202 (53.96%), Query Frame = 1
Query: 412 KALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVP--PPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLLEVLNRGATGGGGGRGRGVIGNSGRGKGSEQCPPGVVEDLLAMMEQLGQ 1011
+ LP M VTYRLAGVDGEATEEVV++L DS A QDPE++F+ I E GGLPLLL LA P P + + GS G S+ A T G R EV +L +RLLR CML +NRA L+A+KAPG+LL +L+EVL RG G SG GS + V + LL ++E L Q
Sbjct: 5486 EVLPPMTVTYRLAGVDGEATEEVVETLVDSAAQASQDPEQQFACTSAIGE-------NGGLPLLLALAHPPQLPHQHLSTEEGSEGG-----------------STIAATVGAMRA-EVCTLALRLLRHCCMLHSNRARLVAIKAPGVLLRRLVEVL----------RGSG----SGTSAGSSESNGAVADSLLQILELLVQ 5648
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S3QBC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBC4_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.550e-7 Identity = 58/168 (34.52%), Postives = 81/168 (48.21%), Query Frame = 1
Query: 409 MKALPAMIVTYRLAGVDGEATEEVVD--SLPDSDAATDQDP---------ERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLLEVLN 879
+ +LPAM+VTYRLAGVDGEATE++V+ L D DA D D E+++ I R + + R G+ +LL R+ G + + D ET R A + T++LLR MLS NR L+ +AP +LL LL+VLN
Sbjct: 1188 VSSLPAMVVTYRLAGVDGEATEDIVEVGDLVDPDAPPDNDTSRAEYEKQMEKEYGITRAVTKGR-------GVGVLL--------RSLEARVGQILQRIRRDDIETRCAIGGRRKQNATRTLFVKSPPCS--TLKLLRHCAMLSDNRKKLVKAQAPTVLLRLLLDVLN 1338
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S2MFN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MFN7_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.670e-7 Identity = 50/153 (32.68%), Postives = 71/153 (46.41%), Query Frame = 1
Query: 418 LPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLALKAPGILLHKLLEVL 876
LP M+VTYRLAGVDGEATEE +D + D +A +DPE+ F++ + +R GGL LL +DV EA + E+F + L+ + N A LLA +APG+LL L+++L
Sbjct: 252 LPPMLVTYRLAGVDGEATEETLDVVEDPEALRQEDPEKTFAVT---SVLRTQLKEGGGLRGLL-------------------RCIDV---------------EARRMAVDGNTELFRAGLSLVHHCARIQENCAFLLAHRAPGLLLQCLVDLL 367
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S0KAM1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAM1_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 6.030e-7 Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 409 MKALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAE 561
+ ++P M+VTYRLAGVDGEATE+VV++L D + + DPE +F+I RDIAE
Sbjct: 357 ISSMPPMVVTYRLAGVDGEATEDVVEALSDPEGSGGIDPEVEFAITRDIAE 407
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A4D9DHT1_9STRA (ZZ-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHT1_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.620e-6 Identity = 57/166 (34.34%), Postives = 71/166 (42.77%), Query Frame = 1
Query: 418 LPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLA-LKAPGILLHKLLEVLNRGATGGGGGRG 912
LP M+VTYRL GVDGE TEEVV++L D A E+ + A + + GGL LL LA+ P + P SS + E + SL ++ LR C NR+ LL L P LL LL L GGGGG G
Sbjct: 3996 LPPMVVTYRLMGVDGEPTEEVVETLEDEKAEN----EKSAAAALSLKMIEVIGSVNGGLHALLTLARPP-----------------------IYPSSSLKERE-----------ISSLAIKTLRLCCKAPENRSRLLLRLNGPATLLSYLLTALRMSRRGGGGGVG 4123
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S3WCK1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WCK1_EMIHU) HSP 1 Score: 59.3 bits (142), Expect = 2.350e-6 Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 427 MIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMM 672
M+V YRL G+DGEATEE+V+++ D +AA + DPE +F+++ + E EGGL LLL L +V A AG PGE +
Sbjct: 23 MVVVYRLQGLDGEATEEIVEAI-DEEAAEETDPEAEFALSAVVGE-------EGGLELLLRLLEV----AGMPRAGQPGECI 92
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: W7U2B9_9STRA (Zinc finger, ZZ-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B9_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 8.920e-6 Identity = 56/166 (33.73%), Postives = 71/166 (42.77%), Query Frame = 1
Query: 418 LPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAEVRAYCLHEGGLPLLLYLAQVPPPRARARSAGSPGEMMDVDTHETVSPDSSARSSEADTAGMARGWEVFSLTVRLLRRVCMLSANRADLLA-LKAPGILLHKLLEVLNRGATGGGGGRG 912
LP M+VTYRL GVDGE TEEVV++L D A + E+ + A + + GGL LL L + P +SP SS + E + SL ++ LR C NR+ LL L P LL LL L GGG G G
Sbjct: 3791 LPPMVVTYRLMGVDGEPTEEVVETLEDEKA----EDEKAAAAALSLKMIEVIGSVNGGLHALLTLVRPP-----------------------ISPSSSLKERE-----------ISSLAIKTLRLCCKAPENRSRLLLRLNGPATLLSYLLTALRMSRRGGGRGVG 3918
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Match: A0A7S2LBI9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LBI9_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.300e-5 Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 409 MKALPAMIVTYRLAGVDGEATEEVVDSLPDSDAATDQDPERKFSIARDIAE 561
+ +LP M+VTYRLAGVDGEATE+VV L D + D E++F+I R +AE
Sbjct: 355 VTSLPPMVVTYRLAGVDGEATEDVVSELVDGEEKEKMDEEKEFAITRIVAE 405 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18416.4964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18416.4964.1 >prot_H-elongata_contig18416.4964.1 ID=prot_H-elongata_contig18416.4964.1|Name=mRNA_H-elongata_contig18416.4964.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp MVPWIAPLTVLRRCGCSEGWNMHDSKPDGMCTMATFIISVHPRLLVFMKAback to top mRNA from alignment at H-elongata_contig18416:2..1509+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18416.4964.1 ID=mRNA_H-elongata_contig18416.4964.1|Name=mRNA_H-elongata_contig18416.4964.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1508bp|location=Sequence derived from alignment at H-elongata_contig18416:2..1509+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18416:2..1509+ >mRNA_H-elongata_contig18416.4964.1 ID=mRNA_H-elongata_contig18416.4964.1|Name=mRNA_H-elongata_contig18416.4964.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig18416:2..1509+ (Himanthalia elongata Himel1 dioecious)back to top |