prot_H-elongata_contig18416.4966.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18416.4966.1
Unique Nameprot_H-elongata_contig18416.4966.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length228
Homology
BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.120e-64
Identity = 134/196 (68.37%), Postives = 150/196 (76.53%), Query Frame = 0
Query:    1 VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVAAHLAKANGSASNARQAQRLRTICRAFFDECRIAEEDVERGRNEPLVGVPAETATDSGDGSTAAGGVEAGAGAV-ESVRSRLHKCAGFVAVLTLLLQPLAEWERSKRFVLEQLIRNAGARKASGAEGXXXXXRGGRRRSRSFAAPGSPHHSAAGSA 195
            ++QDVRLLLLRLAHQESLSADCGGGAARSNIQL+PYQLQ AAHLAK  G++S ARQAQRLR+ICRAFFDECR+AE D ERG ++  V  PA  +T             A +  V E VRSRLH+C+GFVAVLTLLLQP+ EW R KRFVLEQLIR+AGARKA G  G     RGGRRRSRSFA P SP  SA+GSA
Sbjct: 8320 LIQDVRLLLLRLAHQESLSADCGGGAARSNIQLIPYQLQAAAHLAKITGTSSGARQAQRLRSICRAFFDECRLAEADAERG-HDGAVATPAAVSTAXXXXXXX---XXARSPVVPEGVRSRLHECSGFVAVLTLLLQPVEEWTRCKRFVLEQLIRHAGARKARGVAGSGVEGRGGRRRSRSFAGPSSPRVSASGSA 8511          
BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: D8LLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.320e-12
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    1 VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQ 39
            ++QDVRLLLLRLAHQESLSADCGGGAARSNIQ++PYQLQ
Sbjct:  545 LIQDVRLLLLRLAHQESLSADCGGGAARSNIQVIPYQLQ 583          
BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: A0A1E7F015_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F015_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.560e-5
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVA 41
            VL DVRLL++R+A+ ESLSADCGGG+ RSN +L+ +QL +A
Sbjct: 1509 VLHDVRLLMIRMAYGESLSADCGGGSLRSNAELIFHQLSMA 1549          
BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: A0A7S0KAM1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAM1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.020e-5
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 0
Query:    1 VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVAAHLAK-ANGSASNARQAQRLRTICRAFF---DECRIAEEDVERGR 82
            +L D+R+LLLR+AH ESLS DCGGG+  SN  L+  QLQ+A    K A   A+++   + +R++  AF    + C    E+  R R
Sbjct: 1027 ILHDLRILLLRIAHGESLSVDCGGGSLSSNTVLIFQQLQMAEMCMKNAEAEANSSVIVEHVRSLGSAFVAGVEICNYVTEEQARAR 1112          
BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Match: A0A7S4NFE5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NFE5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.030e-5
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query:    2 LQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVA 41
            + DVRLLLLR+AH ESL+ADCGGG+  SN QLV + L +A
Sbjct: 1062 MHDVRLLLLRIAHGESLNADCGGGSLTSNAQLVFHMLHLA 1101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18416.4966.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE1.120e-6468.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX1_ECTSI5.320e-1289.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1E7F015_9STRA1.560e-563.41Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S0KAM1_9STRA2.020e-540.70Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S4NFE5_9STRA9.030e-565.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025704E3 ubiquitin ligase, UBR4PFAMPF13764E3_UbLigase_R4coord: 3..169
e-value: 4.1E-14
score: 51.8
NoneNo IPR availablePANTHERPTHR21725:SF1E3 UBIQUITIN-PROTEIN LIGASE UBR4coord: 2..168
NoneNo IPR availablePANTHERPTHR21725PUSHOVER/RETINOBLASTOMA-ASSOCIATED FACTOR 600coord: 2..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18416contigH-elongata_contig18416:6102..7252 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18416.4966.1mRNA_H-elongata_contig18416.4966.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18416 6102..7254 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18416.4966.1 ID=prot_H-elongata_contig18416.4966.1|Name=mRNA_H-elongata_contig18416.4966.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
VLQDVRLLLLRLAHQESLSADCGGGAARSNIQLVPYQLQVAAHLAKANGS
ASNARQAQRLRTICRAFFDECRIAEEDVERGRNEPLVGVPAETATDSGDG
STAAGGVEAGAGAVESVRSRLHKCAGFVAVLTLLLQPLAEWERSKRFVLE
QLIRNAGARKASGAEGSGVEGRGGRRRSRSFAAPGSPHHSAAGSAPQGGI
SVTGTGKRKRSSIHSPPAGGGGGDALDA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025704E3_Ub_ligase_UBR4