mRNA_H-elongata_contig184145.4963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184145.4963.1
Unique NamemRNA_H-elongata_contig184145.4963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184145.4963.1 vs. uniprot
Match: D7G2C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 9.950e-37
Identity = 66/84 (78.57%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:    1 QVGVKVSGFAPRVAALESVLYMIIDRIKDTPKPMDAESRKDAARVVRGFREQAHKLQTDLSRHFPFVVQVDPLSLAKG-GPQSS 249
            QVGVKVSGFAPR+AALESVLYM+ID++KD PKP+DAE+RK+AA V+R FR+QAHKLQTDLSRHFP+VVQVDPL LAK  GP+S+
Sbjct:  147 QVGVKVSGFAPRIAALESVLYMVIDQVKDLPKPVDAEARKEAAEVMRTFRQQAHKLQTDLSRHFPYVVQVDPLGLAKELGPKSN 230
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BLAST of mRNA_H-elongata_contig184145.4963.1 vs. uniprot
Match: A0A6H5L4U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U3_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.950e-35
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 QVGVKVSGFAPRVAALESVLYMIIDRIKDTPKPMDAESRKDAARVVRGFREQAHKLQTDLSRHFPFVVQVDPLSLAKG-GPQSS 249
            QVGVKVSGFAPR+ ALESVLYMIID+IKD PKP+DAE+RK+AA V+R FR+QAHKLQTDLSRHFP+VVQVDPL LAK  GP+S+
Sbjct:  270 QVGVKVSGFAPRIDALESVLYMIIDQIKDLPKPVDAEARKEAAEVMRTFRQQAHKLQTDLSRHFPYVVQVDPLGLAKELGPKSN 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184145.4963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2C1_ECTSI9.950e-3778.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4U3_9PHAE4.950e-3579.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184145contigH-elongata_contig184145:439..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.3632889-CDS-H-elongata_contig184145:438..5551622930056.3632889-CDS-H-elongata_contig184145:438..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184145 439..555 -
1691679263.7134416-CDS-H-elongata_contig184145:438..5551691679263.7134416-CDS-H-elongata_contig184145:438..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184145 439..555 -
1622930056.3798907-CDS-H-elongata_contig184145:983..11151622930056.3798907-CDS-H-elongata_contig184145:983..1115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184145 984..1115 -
1691679263.7234688-CDS-H-elongata_contig184145:983..11151691679263.7234688-CDS-H-elongata_contig184145:983..1115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184145 984..1115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184145.4963.1prot_H-elongata_contig184145.4963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184145 439..1115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184145.4963.1

>prot_H-elongata_contig184145.4963.1 ID=prot_H-elongata_contig184145.4963.1|Name=mRNA_H-elongata_contig184145.4963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
QVGVKVSGFAPRVAALESVLYMIIDRIKDTPKPMDAESRKDAARVVRGFR
EQAHKLQTDLSRHFPFVVQVDPLSLAKGGPQSS
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mRNA from alignment at H-elongata_contig184145:439..1115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184145.4963.1 ID=mRNA_H-elongata_contig184145.4963.1|Name=mRNA_H-elongata_contig184145.4963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=677bp|location=Sequence derived from alignment at H-elongata_contig184145:439..1115- (Himanthalia elongata Himel1 dioecious)
CAGGTGGGCGTGAAGGTTTCGGGGTTTGCTCCAAGAGTGGCGGCGTTGGA
GTCTGTTCTGTACATGATCATCGATCGAATAAAGGACACACCAAAGCCAA
TGGACGCCGAGTCGAGGAAAGACGCCGCGAGGGTCAGTCAGTCAGTCAGT
ATGCCAAGTCAAATATCTAATGACTCATTTCGTTAGTAAAATAATAATTC
AGTTAAGTCATTCAGTTAGTCATTCAGTTAATCTTTCAGTTGGTCATTCA
TTTAACCATTCAGACAGGCAGCCAGTCAGTAAAAGCAGCAGCAGCAGCAG
CAGAATGGTGGCTCTTGTTACACAGCGGCAGTCGCATCAGTTGCACGCCG
CCGTAGCGTTGCACTAGTACGACACCAATCACCCCAGACGTGTGTGTAAG
GGGGGGGGAGACAGGTGGGAGCGGAGTGGCTGACGTTTGCAAAATGCACC
CTCCAGTTTCTGGGTGGTGTAACCGTTCACAATTTTATCTCGTATCAGCT
CAGCTCTCCCCTTCTCGATGTCCCTCCAAATACCCCGTCGCCTTGTGTGC
TTTGACTCAGGTAGTGCGCGGCTTCCGTGAGCAGGCACATAAGCTCCAGA
CAGACCTGTCGCGGCACTTTCCGTTCGTTGTCCAGGTCGATCCCCTTAGC
TTGGCCAAAGGTGGGCCGCAATCTTCT
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Coding sequence (CDS) from alignment at H-elongata_contig184145:439..1115-

>mRNA_H-elongata_contig184145.4963.1 ID=mRNA_H-elongata_contig184145.4963.1|Name=mRNA_H-elongata_contig184145.4963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig184145:439..1115- (Himanthalia elongata Himel1 dioecious)
CAGGTGGGCGTGAAGGTTTCGGGGTTTGCTCCAAGAGTGGCGGCGTTGGA
GTCTGTTCTGTACATGATCATCGATCGAATAAAGGACACACCAAAGCCAA
TGGACGCCGAGTCGAGGAAAGACGCCGCGAGGCAGGTGGGCGTGAAGGTT
TCGGGGTTTGCTCCAAGAGTGGCGGCGTTGGAGTCTGTTCTGTACATGAT
CATCGATCGAATAAAGGACACACCAAAGCCAATGGACGCCGAGTCGAGGA
AAGACGCCGCGAGGGTAGTGCGCGGCTTCCGTGAGCAGGCACATAAGCTC
CAGACAGACCTGTCGCGGCACTTTCCGTTCGTTGTCCAGGTCGATCCCCT
TAGCTTGGCCAAAGGTGGGCCGCAATCTTCTGTAGTGCGCGGCTTCCGTG
AGCAGGCACATAAGCTCCAGACAGACCTGTCGCGGCACTTTCCGTTCGTT
GTCCAGGTCGATCCCCTTAGCTTGGCCAAAGGTGGGCCGCAATCTTCT
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