mRNA_H-elongata_contig184136.4962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184136.4962.1
Unique NamemRNA_H-elongata_contig184136.4962.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184136.4962.1 vs. uniprot
Match: D8LB88_ECTSI (Antibiotic biosynthesis monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB88_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.800e-16
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   25 RERESKLASFSGFQEFMLLRLDDHDQGGGRSGEFGANEA--GYTEFISHTTWAHQLDFLDWK 204
            RERESKLASFSGF++FMLLRLD  +       E GA  A  GYTEF+SHT+WAHQ+DF +WK
Sbjct:    3 RERESKLASFSGFEQFMLLRLDTREVEKNEEEE-GAPAARPGYTEFVSHTSWAHQMDFEEWK 63
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BLAST of mRNA_H-elongata_contig184136.4962.1 vs. uniprot
Match: A0A6H5KCE4_9PHAE (ABM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCE4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.990e-16
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   25 RERESKLASFSGFQEFMLLRLDDHDQGGGRSGEFGANEA--GYTEFISHTTWAHQLDFLDWKK 207
            RERESKLASFSGF++FMLLR+D  +    +  E GA  A  GYTEF+SHTTWAHQ+DF +WK+
Sbjct:   96 RERESKLASFSGFEQFMLLRVDTREAEK-KEEEEGAPAARPGYTEFVSHTTWAHQMDFEEWKR 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184136.4962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB88_ECTSI1.800e-1664.52Antibiotic biosynthesis monooxygenase n=1 Tax=Ecto... [more]
A0A6H5KCE4_9PHAE2.990e-1663.49ABM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184136contigH-elongata_contig184136:298..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-27_004790.1
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.3102925-CDS-H-elongata_contig184136:297..5131622930056.3102925-CDS-H-elongata_contig184136:297..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184136 298..513 -
1691679263.7034388-CDS-H-elongata_contig184136:297..5131691679263.7034388-CDS-H-elongata_contig184136:297..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184136 298..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184136.4962.1prot_H-elongata_contig184136.4962.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184136 298..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184136.4962.1

>prot_H-elongata_contig184136.4962.1 ID=prot_H-elongata_contig184136.4962.1|Name=mRNA_H-elongata_contig184136.4962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
SECETVPLRERESKLASFSGFQEFMLLRLDDHDQGGGRSGEFGANEAGYT
EFISHTTWAHQLDFLDWKKRY*
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mRNA from alignment at H-elongata_contig184136:298..513-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184136.4962.1 ID=mRNA_H-elongata_contig184136.4962.1|Name=mRNA_H-elongata_contig184136.4962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig184136:298..513- (Himanthalia elongata Himel1 dioecious)
TCGGAATGTGAAACCGTTCCACTCAGGGAACGAGAAAGCAAGCTGGCGAG
CTTCAGCGGCTTCCAGGAGTTCATGTTACTGAGGCTTGATGATCACGATC
AGGGTGGGGGGCGAAGTGGGGAGTTCGGCGCGAACGAAGCCGGCTACACC
GAATTTATCTCGCATACCACCTGGGCGCACCAGCTCGATTTCCTGGACTG
GAAGAAAAGGTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig184136:298..513-

>mRNA_H-elongata_contig184136.4962.1 ID=mRNA_H-elongata_contig184136.4962.1|Name=mRNA_H-elongata_contig184136.4962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig184136:298..513- (Himanthalia elongata Himel1 dioecious)
TCGGAATGTGAAACCGTTCCACTCAGGGAACGAGAAAGCAAGCTGGCGAG
CTTCAGCGGCTTCCAGGAGTTCATGTTACTGAGGCTTGATGATCACGATC
AGGGTGGGGGGCGAAGTGGGGAGTTCGGCGCGAACGAAGCCGGCTACACC
GAATTTATCTCGCATACCACCTGGGCGCACCAGCTCGATTTCCTGGACTG
GAAGAAAAGGTATTAATCGGAATGTGAAACCGTTCCACTCAGGGAACGAG
AAAGCAAGCTGGCGAGCTTCAGCGGCTTCCAGGAGTTCATGTTACTGAGG
CTTGATGATCACGATCAGGGTGGGGGGCGAAGTGGGGAGTTCGGCGCGAA
CGAAGCCGGCTACACCGAATTTATCTCGCATACCACCTGGGCGCACCAGC
TCGATTTCCTGGACTGGAAGAAAAGGTATTAA
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