prot_H-elongata_contig18413.4961.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig18413.4961.1
Unique Name	prot_H-elongata_contig18413.4961.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	630

Homology

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BLAST of mRNA_H-elongata_contig18413.4961.1 vs. uniprot
Match: D8LCY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCY0_ECTSI)

HSP 1 Score: 548 bits (1411), Expect = 1.110e-180
Identity = 347/681 (50.95%), Postives = 434/681 (63.73%), Query Frame = 0

Query:    1 MLYSTVLHHSR----GAGGDVVGISWKAPTKLHPSPSLVVTCSHQVVVYKASPAEEQRTHQWSFKPSAATVLSHPAVYIPVASRYVGVQQGSILVSWKETEQSVKRPLSTQANGAVQAVHTCPQLGDYFVTVLTSGGVSLFKGGLQCVAQISDTKDI----------------SKVVWSGVLGVTLVVVAKVGAK-ERLSTFALS---LGSSS-------RPASPGAAFVTLISSHVLPKPPRPTDAGESIPADVLCEEASACSAAFLG---GGGSWSRSGGVMAVAWWTPHGPAWTKIVIDASGIREEFVRSVVTRVTTGTALVALNGTEEATSPAALTNGKKSRLRKGKNLIPAKTVIVGESSSAGRSSS-----VPVLAAADGGRLLVHSG---DACPRLSMWDATYGVLLENEGAPE-TTDSRADAAITK---RVASMMVSGNGTHLALAVAGKVLVCPVPVREAGTLSSLLKRRRIS-SVTASST---SGLERMYPAVDLLRSASAAGLLDNTGAVEPERWDASVVSPFRDAEANMIRLLEDATRRKDSDLFQCVVQKYVQQHWEEAGGIGDDGEDWRRKRPRGGGDSILGVVTAAAVELCLANPNAALWGALAMLIKSGGVSARQHRGLVEGVIEYA-PKLLEEVMIHVPDLPEADTVRILGHFLSQASILASSS 630
            ML STVLH SR    G   DVVGI+WKAPT+ HPSPSLVVTC+HQVVVYK  P EE+RTHQWSFKPSAATVLSHPAV++P  SRYVGVQQGS LVSW+E+EQ VK PLS+QA G +QAVH CP+LGDYFV VL SGGV L++GGLQ  A                        +K VWSGVLG  ++V+   GA  +R++TF+LS   +GSSS         A+   A VTL+SSH+L KP                      SAAFLG   GG    RS  V++VAW T  GP WTK V+ A G+ EEF R     V  G+     +      S ++ +NG  +   K K   PA     G  SS G  S      VP +AAADGGRLL+HSG   DA PRL++WD++YGVLLE+  APE ++D     + ++   R   + VSG+G HLA+A AGKVLVCP+P + AGTL+SLL+R+R S S    ST   +G    +P++DL RS  A+ LL  TGAVE  +W+A+VV PFR+AEA +IR L +A RRKD   F+ V+++++      + G G+DG   R+KR RG G      V A+AVELCLANP+A LWG L +L++SGGVSAR HRGLV  ++E+A P+LLEEVM+HVPDLPE D VRIL HFLSQA+ LA +S
Sbjct:    1 MLESTVLHQSRTGPRGQPNDVVGINWKAPTRSHPSPSLVVTCAHQVVVYK--PGEERRTHQWSFKPSAATVLSHPAVFLPSRSRYVGVQQGSTLVSWRESEQDVKHPLSSQAAGPIQAVHACPRLGDYFVAVLASGGVVLYQGGLQRAAHCDAXXXXXXXXXXXXXXSAGDARAKAVWSGVLGDRVLVLENTGAATDRVTTFSLSAGGVGSSSVRRDDACAAAADVPASVTLVSSHILTKPXXXXXXXXXXXXXXT-------SAAFLGRDSGGSGEGRS--VISVAWRTSSGPVWTKAVVGAGGVTEEFARHAGGEVVAGSRRATEHNGNGVVSVSS-SNGHGTPKAKSKK--PA-----GNQSSVGEGSGAAWACVPAIAAADGGRLLIHSGSGGDASPRLAVWDSSYGVLLEDGVAPEFSSDGGGGGSASRSSGRAVGLKVSGDGAHLAIAAAGKVLVCPLPAQAAGTLASLLRRKRPSPSAIGGSTVIPAGRGSSFPSIDLSRSVPASTLLGKTGAVEAGKWEAAVVVPFREAEAGVIRSLREAARRKDIGAFEHVLREHLGAGSRSSDGRGEDG---RKKRQRGDGGGFSSAVVASAVELCLANPDAKLWGGLGVLVRSGGVSARHHRGLVAEIVEHASPELLEEVMLHVPDLPEVDAVRILRHFLSQAATLAEAS 659

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig18413.4961.1 vs. uniprot

BLAST of mRNA_H-elongata_contig18413.4961.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LCY0_ECTSI	1.110e-180	50.95	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15633:SF2	NUCLEOLAR PROTEIN 11	coord: 360..621
None	No IPR available	PANTHER	PTHR15633	UNCHARACTERIZED	coord: 33..164
None	No IPR available	PANTHER	PTHR15633:SF2	NUCLEOLAR PROTEIN 11	coord: 33..164
None	No IPR available	PANTHER	PTHR15633	UNCHARACTERIZED	coord: 360..621

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig18413	contig	H-elongata_contig18413:3909..6955 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig18413.4961.1	mRNA_H-elongata_contig18413.4961.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig18413 3909..6955 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig18413.4961.1 ID=prot_H-elongata_contig18413.4961.1|Name=mRNA_H-elongata_contig18413.4961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=630bp
MLYSTVLHHSRGAGGDVVGISWKAPTKLHPSPSLVVTCSHQVVVYKASPA
EEQRTHQWSFKPSAATVLSHPAVYIPVASRYVGVQQGSILVSWKETEQSV
KRPLSTQANGAVQAVHTCPQLGDYFVTVLTSGGVSLFKGGLQCVAQISDT
KDISKVVWSGVLGVTLVVVAKVGAKERLSTFALSLGSSSRPASPGAAFVT
LISSHVLPKPPRPTDAGESIPADVLCEEASACSAAFLGGGGSWSRSGGVM
AVAWWTPHGPAWTKIVIDASGIREEFVRSVVTRVTTGTALVALNGTEEAT
SPAALTNGKKSRLRKGKNLIPAKTVIVGESSSAGRSSSVPVLAAADGGRL
LVHSGDACPRLSMWDATYGVLLENEGAPETTDSRADAAITKRVASMMVSG
NGTHLALAVAGKVLVCPVPVREAGTLSSLLKRRRISSVTASSTSGLERMY
PAVDLLRSASAAGLLDNTGAVEPERWDASVVSPFRDAEANMIRLLEDATR
RKDSDLFQCVVQKYVQQHWEEAGGIGDDGEDWRRKRPRGGGDSILGVVTA
AAVELCLANPNAALWGALAMLIKSGGVSARQHRGLVEGVIEYAPKLLEEV
MIHVPDLPEADTVRILGHFLSQASILASSS