mRNA_H-elongata_contig184089.4960.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184089.4960.1
Unique NamemRNA_H-elongata_contig184089.4960.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: D7G6J4_ECTSI (Pyrroline-5-carboxylate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6J4_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.890e-16
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   46 VLKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEMRNAKK 189
            VLKD VCSPGGTTI AVEALEK GFR+AAI AVVAATN+S+EMRN KK
Sbjct:  232 VLKDNVCSPGGTTICAVEALEKNGFRAAAISAVVAATNKSLEMRNTKK 279
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BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: D7FWF9_ECTSI (Pyrroline-5-carboxylate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.760e-13
Identity = 35/49 (71.43%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   43 AVLKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEMRNAKK 189
            AVLKD VCSPGG TIAA+E+LEK GFRSAA++AV+A  ++SIEMRNA++
Sbjct:  282 AVLKDNVCSPGGLTIAAIESLEKNGFRSAAMQAVIAVASKSIEMRNAEE 330
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BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: A0A6H5JW87_9PHAE (Pyrroline-5-carboxylate reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW87_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.660e-12
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   43 AVLKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEMRNAKK 189
            AVLKD VCSPGG TIAA+E+LEK GFRSAA++AV+   ++SIEMRN ++
Sbjct:  321 AVLKDNVCSPGGLTIAAIESLEKNGFRSAAMQAVITVASKSIEMRNTEE 369
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BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: A0A7S4IV28_9EUKA (Pyrroline-5-carboxylate reductase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IV28_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 2.950e-12
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   49 LKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEMR 177
            LKDQVCSPGGTTIA VEALEK GFR+AA+ AV AA+ RS+E+R
Sbjct:  121 LKDQVCSPGGTTIAGVEALEKNGFRAAAMAAVAAASGRSLELR 163
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BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: A0A318S7K6_9DEIO (Pyrroline-5-carboxylate reductase n=1 Tax=Deinococcus yavapaiensis KR-236 TaxID=694435 RepID=A0A318S7K6_9DEIO)

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-11
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 KLYIAPPRLLLARA--AVLKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEM 174
            K+ IA   LLLARA  A+L+D+V SPGGTTIA ++ALE G FRSA IEAVVAAT R  E+
Sbjct:  199 KVLIATGELLLARAHPAMLRDEVASPGGTTIAGLQALEAGAFRSAVIEAVVAATKRGSEL 258
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BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: A0A7S2LI78_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LI78_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.650e-11
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   49 LKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEMRNA 183
            LKDQV SPGGTTIA VEALEKGGFR+  I AV AAT RS+++  A
Sbjct:   44 LKDQVTSPGGTTIAGVEALEKGGFRATTISAVTAATKRSMQLGGA 88
[Close]
BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: A0A7S3BCN7_9EUKA (Pyrroline-5-carboxylate reductase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BCN7_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 5.820e-11
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   49 LKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEMRNA 183
            LKD VCSPGGTTIA VEALE  GFR+AAI AVVAAT RS E+R A
Sbjct:  225 LKDMVCSPGGTTIAGVEALEYRGFRAAAIAAVVAATTRSAELRAA 269
[Close]
BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: A0A1Z5JJW4_FISSO (Pyrroline-5-carboxylate reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJW4_FISSO)

HSP 1 Score: 65.1 bits (157), Expect = 6.080e-11
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   46 VLKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEM 174
            VLKDQVCSPGGTTIA  + LEKGGFRSA I+AV AAT RS+++
Sbjct:  227 VLKDQVCSPGGTTIAGCDELEKGGFRSATIQAVKAATKRSMQL 269
[Close]
BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: K9TWJ2_CHRTP (Pyrroline-5-carboxylate reductase n=6 Tax=Chroococcidiopsidaceae TaxID=1890528 RepID=K9TWJ2_CHRTP)

HSP 1 Score: 63.5 bits (153), Expect = 2.370e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   43 AVLKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEMRN 180
            A LKD+V SPGGTTIA V ALEK GFRSA IEAVVAAT RS E+ N
Sbjct:  247 AELKDRVTSPGGTTIAGVSALEKAGFRSALIEAVVAATRRSRELGN 292
[Close]
BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Match: A0A7S2VER5_9STRA (Pyrroline-5-carboxylate reductase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VER5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.150e-10
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   46 VLKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVAATNRSIEM 174
            +LKD+VCSPGGTTIA VE LEKGG R+AAI+AV AAT RS+++
Sbjct:  230 LLKDRVCSPGGTTIAGVEELEKGGVRAAAIQAVKAATRRSMQL 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184089.4960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6J4_ECTSI2.890e-1683.33Pyrroline-5-carboxylate reductase n=2 Tax=Ectocarp... [more]
D7FWF9_ECTSI1.760e-1371.43Pyrroline-5-carboxylate reductase n=1 Tax=Ectocarp... [more]
A0A6H5JW87_9PHAE2.660e-1267.35Pyrroline-5-carboxylate reductase n=1 Tax=Ectocarp... [more]
A0A7S4IV28_9EUKA2.950e-1276.74Pyrroline-5-carboxylate reductase n=1 Tax=Prymnesi... [more]
A0A318S7K6_9DEIO1.000e-1165.00Pyrroline-5-carboxylate reductase n=1 Tax=Deinococ... [more]
A0A7S2LI78_9STRA3.650e-1171.11Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3BCN7_9EUKA5.820e-1177.78Pyrroline-5-carboxylate reductase n=1 Tax=Haptolin... [more]
A0A1Z5JJW4_FISSO6.080e-1174.42Pyrroline-5-carboxylate reductase n=2 Tax=Fistulif... [more]
K9TWJ2_CHRTP2.370e-1076.09Pyrroline-5-carboxylate reductase n=6 Tax=Chroococ... [more]
A0A7S2VER5_9STRA3.150e-1072.09Pyrroline-5-carboxylate reductase n=1 Tax=Amphipro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184089contigH-elongata_contig184089:85..276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D7FWF9
Preferred nameP5CR
KEGG rclassRC00054,RC00083
KEGG koko:K00286
KEGG ReactionR01248,R01251,R03291,R03293
KEGG Pathwayko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230
KEGG ModuleM00015
EggNOG free text desc.pyrroline-5-carboxylate reductase activity
EggNOG OGsCOG0345@1,KOG3124@2759
Ec32 ortholog descriptiondelta-1-pyrroline-5-carboxylate reductase, partial
Ec32 orthologEc-07_007350.1
EC1.5.1.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.1462271-CDS-H-elongata_contig184089:84..2761622930056.1462271-CDS-H-elongata_contig184089:84..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184089 85..276 +
1691679263.6359708-CDS-H-elongata_contig184089:84..2761691679263.6359708-CDS-H-elongata_contig184089:84..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184089 85..276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184089.4960.1prot_H-elongata_contig184089.4960.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184089 85..276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184089.4960.1

>prot_H-elongata_contig184089.4960.1 ID=prot_H-elongata_contig184089.4960.1|Name=mRNA_H-elongata_contig184089.4960.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
KLYIAPPRLLLARAAVLKDQVCSPGGTTIAAVEALEKGGFRSAAIEAVVA
ATNRSIEMRNAKK*
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mRNA from alignment at H-elongata_contig184089:85..276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184089.4960.1 ID=mRNA_H-elongata_contig184089.4960.1|Name=mRNA_H-elongata_contig184089.4960.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig184089:85..276+ (Himanthalia elongata Himel1 dioecious)
AAACTGTATATTGCTCCTCCTCGACTCCTCCTTGCACGTGCAGCGGTTTT
GAAGGATCAGGTGTGTAGCCCAGGGGGGACGACAATCGCGGCGGTGGAGG
CTCTCGAGAAGGGCGGCTTTCGCTCGGCGGCGATCGAGGCAGTCGTCGCC
GCAACCAATCGATCGATCGAGATGCGAAACGCGAAAAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig184089:85..276+

>mRNA_H-elongata_contig184089.4960.1 ID=mRNA_H-elongata_contig184089.4960.1|Name=mRNA_H-elongata_contig184089.4960.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig184089:85..276+ (Himanthalia elongata Himel1 dioecious)
AAACTGTATATTGCTCCTCCTCGACTCCTCCTTGCACGTGCAGCGGTTTT
GAAGGATCAGGTGTGTAGCCCAGGGGGGACGACAATCGCGGCGGTGGAGG
CTCTCGAGAAGGGCGGCTTTCGCTCGGCGGCGATCGAGGCAGTCGTCGCC
GCAACCAATCGATCGATCGAGATGCGAAACGCGAAAAAATAGAAACTGTA
TATTGCTCCTCCTCGACTCCTCCTTGCACGTGCAGCGGTTTTGAAGGATC
AGGTGTGTAGCCCAGGGGGGACGACAATCGCGGCGGTGGAGGCTCTCGAG
AAGGGCGGCTTTCGCTCGGCGGCGATCGAGGCAGTCGTCGCCGCAACCAA
TCGATCGATCGAGATGCGAAACGCGAAAAAATAG
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