mRNA_H-elongata_contig18404.4959.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18404.4959.1
Unique NamemRNA_H-elongata_contig18404.4959.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: D7FRE2_ECTSI (Checkpoint protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE2_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 5.910e-152
Identity = 222/263 (84.41%), Postives = 240/263 (91.25%), Query Frame = 1
Query:    1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPP-----EVQLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVMDAGDDLS 774
            G+IGAIEKIG AC+VHL E  +HLSV ESGS+GVDVYAEL Q MLFHEYRIESRAGN ILFEANASLLLQALNSG+T+PTCQIKLAKRAGQPCLS+ETRALEI VVHDIPVKVMPANEA YY PP     +VQLELPRQRSLRTV+DRMKAIDKFL+VDADMGGQLVF RVEKADATIKTFY+NLTPRFE MD   CRKN+SSVKVDVKKL+AV+SMYALRF+TAICC+IGGYSLVLHVIL+P  IGNLTYYVPVMDAGDDL+
Sbjct:   17 GVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVVDRMKAIDKFLFVDADMGGQLVF-RVEKADATIKTFYSNLTPRFEEMDANTCRKNMSSVKVDVKKLAAVMSMYALRFDTAICCIIGGYSLVLHVILSPINIGNLTYYVPVMDAGDDLA 278          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A7S2SUZ2_9STRA (Checkpoint protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUZ2_9STRA)

HSP 1 Score: 246 bits (627), Expect = 3.700e-77
Identity = 128/263 (48.67%), Postives = 180/263 (68.44%), Query Frame = 1
Query:    1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDV--YAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVMDAGDD 768
            G+   +EKIG   +VHL++ ++ L +      G DV  ++ L+Q  LFH++RIES++GN IL +     LL AL+S R AP CQ+KL KR GQ  L +ETRALE++V+HDIPV VM A+E  YY PP+V     QLELP  R+L+TVIDR+K I +++Y+  +M G L   R E     I+T+++NL PR +++DE  C +N  +VKVD KKL+ VLS Y+LRF++ I C+I GYSLV+HVIL+P+  G LT+Y+PVM   D+
Sbjct:   60 GVAATLEKIGPLGVVHLSDTSIQLCIRNDSGQGDDVLAFSALEQKELFHDWRIESQSGNCILLQLTLQNLLDALHSARNAPQCQLKLTKRNGQAALCLETRALEVDVIHDIPVTVMRASEYQYYCPPDVPQPQVQLELPMSRNLKTVIDRLKNISRYIYLHGEMTGALTL-RAETDSLVIQTYFSNLRPRLDSLDES-CEENRGTVKVDTKKLATVLSSYSLRFDSIIMCLIEGYSLVVHVILSPSNCGTLTFYLPVMSINDE 320          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A7S1TZY9_9STRA (Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZY9_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.230e-69
Identity = 122/260 (46.92%), Postives = 168/260 (64.62%), Query Frame = 1
Query:    1 GLIGAIEKIGEAC----IVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCR-KNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPV 750
            G+I  +EK         ++HL+     L++  + ++   V+AEL    LF EYRIES++ + IL EA  + L +A  SGR AP C +KL KR GQPCL +ETRALE++V HDIPVKV+ A E   Y PPEV     QLELP  R LRTV+DR+K  D+++ +D DM G L   R +  +A+IKTF+ NL+PRF+  D+E     N+++V+VD +KL+ VL+ Y +  E AI C + G S VLHV LAP G+G +TYY+PV
Sbjct:   17 GVIMCLEKATAGATPTVLLHLSPGGAKLALPTASTEEPQVFAELAADKLFAEYRIESQSDDCILLEAGLANLARAFRSGRAAPLCLLKLTKRRGQPCLCLETRALEVDVTHDIPVKVLKAAEIEAYAPPEVPAPSVQLELPASRQLRTVVDRLKPFDRYVSLDGDMHGSLTL-RAQSGEASIKTFFPNLSPRFDGFDDEAAAANNVATVRVDGRKLANVLAFYGVPCEAAIACFVEGVSFVLHVFLAPAGVGTVTYYLPV 275          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A7R9U1B3_9STRA (Checkpoint protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B3_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.490e-64
Identity = 100/182 (54.95%), Postives = 132/182 (72.53%), Query Frame = 1
Query:  220 SGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPV 750
            SGRTAP CQ+KL KR GQPCL +ETRALE++V HDIPVKV+ A+E   Y PPEV     QLEL + R LRT++DR+K  DK+LY+D+ M G +   RV+  + T+KTF+ NLTPRF+ MDE+    N  +V+VD KKL++VL+ YAL  E AI C + GY+ ++HV LAP  +G LTYY+P+
Sbjct:    2 SGRTAPLCQLKLTKRGGQPCLCLETRALEVDVTHDIPVKVLKASEIEAYAPPEVPSPTVQLELMQSRQLRTIVDRLKVFDKYLYIDSSMAGNMTL-RVQSGEVTVKTFFPNLTPRFDGMDEDAAIDNEVTVRVDGKKLASVLAFYALSCECAIACFVEGYTFIIHVFLAPRSVGTLTYYLPI 182          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A4D9CSQ4_9STRA (Checkpoint protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSQ4_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.570e-61
Identity = 112/264 (42.42%), Postives = 170/264 (64.39%), Query Frame = 1
Query:    1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRF-EAM---DEERCRKN-----ISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPV 750
            G+    E+ G +C+++L+E ++  +  + GSD V  ++E+QQ  +F EYRI S A N ILFE   S L++A +S +TA   +IKLAKRAGQPC+ +E RAL++ ++H++P++VM A +  YY PP+V     QLELP  RS+RTV++R K +D+F +VD DM G L   R++     ++TFY+NL PR+ E M   DE+  R         S+K+D +K  + L    +++++AICCMI    LVLHV LA + +G LT Y+P+
Sbjct:   17 GVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRIKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLERFKIMDRFCFVDGDMSGALRL-RLQNDRCHVQTFYSNLIPRYVEGMTDGDEDMRRTEEGGSACCSIKLDSRKFLSALHFMTMKYDSAICCMIEESCLVLHVTLAGH-VGTLTLYLPM 278          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A7S3YAY1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAY1_HETAK)

HSP 1 Score: 200 bits (508), Expect = 8.480e-61
Identity = 101/195 (51.79%), Postives = 141/195 (72.31%), Query Frame = 1
Query:    1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEE 570
            GLI  +EK+ + C+++L E+++ +S+ ES  D + V++E+ Q  LF +YRIES + N IL E   + L +AL SGR AP CQ+KLAKR G+PCL+VETRALE+++ HD+PVK++   +  ++  PEV     QLELPR RS RTVIDR+K I++ +Y+DADM G + F RV+  +A IKTFY+NLTPRFE  DEE
Sbjct:   18 GLISILEKVSQVCVIYLTESSMRISIKES-QDDIQVFSEISQERLFTDYRIESLSNNCILLEVGTANLGRALASGRRAPACQLKLAKRGGRPCLAVETRALEVDIAHDLPVKLLRPGDVRFHLAPEVPRPQVQLELPRGRSFRTVIDRVKGINQHVYIDADMSGTITF-RVQTDNAVIKTFYSNLTPRFETGDEE 210          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A836CCR8_9STRA (Checkpoint protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCR8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.880e-45
Identity = 110/277 (39.71%), Postives = 155/277 (55.96%), Query Frame = 1
Query:    4 LIGAIEKIGEA-CIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQ-PCLSVETR--ALEINVVHDIPVK-----VMPANEASYYRPP-----EVQLELPRQRSLRTVIDRMKA-----------IDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDE--ERCRKNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVM 753
            L+  +EK+  + C++ L+++ + ++V  +G D V  +AELQ   +F +Y +                                KLAKRAG  P L VE+    +E+NV  DIPVK     +M A EA YY+ P     +VQLE+P QRS+R V+DRMK            IDK+LY+DA+M GQLV  R+E   ATIKTF+T L+PR+E M+   +  R N +++KVD KKL+ VL +Y + FE AI C +   SL+ HV LA + IG  T+Y PVM
Sbjct:   18 LVATLEKVSSSNCVILLSKDLMRITVVATGPDDVQAFAELQPEHVFEDYNM--------------------------------KLAKRAGGVPHLVVESHMSTMEMNVAQDIPVKASGRFLMNAEEADYYKAPVVPVSQVQLEMPVQRSMRAVVDRMKGKCSPPGKRCRCIDKYLYLDANMRGQLVV-RLETDSATIKTFFTQLSPRYEGMERGPQHNRDNKATLKVDAKKLATVLQVYGMSFEGAILCFVENVSLITHVFLAAS-IGTATFYQPVM 260          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A6G0XB13_9STRA (Checkpoint protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XB13_9STRA)

HSP 1 Score: 145 bits (365), Expect = 7.770e-39
Identity = 90/249 (36.14%), Postives = 139/249 (55.82%), Query Frame = 1
Query:   31 EACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYR-----PPEVQLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNI---SSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVM 753
            E C V L E  +  ++  SG D V  Y  L  + LF +  IESRA N I F    +   +AL SG+ A    ++L KR G+  LS+  + ++++++ +IP++V+    A  YR     PP V LE+P  RSLRT+ DR+K + K++ + A M G L   RVE     ++T YTNL  R + +D+E    +I   S+V+VD K +S +LS+      + +CC++   +LV+H IL     G+ T YVPV+
Sbjct:    8 EMCFVTLNEERMSFALKTSGED-VQTYVHLNVSKLFSDVVIESRANNHIAFALGIANFSRALQSGKEASGVLLRLLKREGRSFLSLRAKTVDLDIIQNIPIEVVSMTTAENYREPNVPPPTVALEMPSLRSLRTITDRLKVMQKYILLQAGMDGTLRL-RVESDAFALQTLYTNLRSRADLVDDENEDMDIPPTSTVRVDAKHISKMLSVDGNAVMSVLCCLVDTQALVMHAILMEQ-FGSFTCYVPVV 253          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A024UMF7_9STRA (Checkpoint protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMF7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.590e-35
Identity = 92/261 (35.25%), Postives = 140/261 (53.64%), Query Frame = 1
Query:   31 EACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYR-----PPEVQLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMD-------EERCRKNI--------SSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVM 753
            + C V L E  +  ++  SG D V  +  L  A +F +  IESRA N I F    +   +AL SG+ A    ++L KR G+  LS+  R ++++++ +IP++V+    A  YR     PP V LE+P  R+LRT+ DR+KA+ KFL V A M G L   RV+     ++T +TNL  R +  D       EE    N+        SSV+VD +  S +LS+      T +CC++   +LV+H +L  +G G+ T YVPV+
Sbjct:   29 DMCFVVLNEERMSFAMKTSGED-VQTFVHLNIAKVFGDVVIESRADNNIAFALGIANFSRALQSGKEASGIMLRLLKRDGRSFLSLRARTVDLDIIQNIPIEVVSMATAESYREPNIPPPTVALEMPPLRALRTITDRLKAMQKFLLVQAGMDGTLRL-RVQSDTIVLQTLHTNLRCRPDLADDPTSKDGEEADGYNVDETNNFAASSVRVDARHASKMLSVDGNAVLTVLCCLVDQQALVVHAVLV-DGFGSFTCYVPVV 286          
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: W7TDG5_9STRA (Checkpoint protein hus1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDG5_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.850e-35
Identity = 65/147 (44.22%), Postives = 101/147 (68.71%), Query Frame = 1
Query:    1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVID 426
            G+    E+ G +C+++L+E ++  +  + GSD V  ++E+QQ  +F EYRI S A N ILFE   S L++A +S +TA   ++KLAKRAGQPC+ +E RAL++ ++H++P++VM A +  YY PP+V     QLELP  RS+RTV++
Sbjct:   17 GVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE2_ECTSI5.910e-15284.41Checkpoint protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S2SUZ2_9STRA3.700e-7748.67Checkpoint protein n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1TZY9_9STRA3.230e-6946.92Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=... [more]
A0A7R9U1B3_9STRA3.490e-6454.95Checkpoint protein n=1 Tax=Pinguiococcus pyrenoido... [more]
A0A4D9CSQ4_9STRA2.570e-6142.42Checkpoint protein n=1 Tax=Nannochloropsis salina ... [more]
A0A7S3YAY1_HETAK8.480e-6151.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CCR8_9STRA3.880e-4539.71Checkpoint protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6G0XB13_9STRA7.770e-3936.14Checkpoint protein n=1 Tax=Aphanomyces euteiches T... [more]
A0A024UMF7_9STRA4.590e-3535.25Checkpoint protein n=1 Tax=Aphanomyces invadans Ta... [more]
W7TDG5_9STRA4.850e-3544.22Checkpoint protein hus1 n=1 Tax=Nannochloropsis ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18404contigH-elongata_contig18404:834..4724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.9
Seed ortholog evalue2.7e-119
Seed eggNOG ortholog2880.D7FRE2
Preferred nameHUS1
KEGG koko:K02870,ko:K10903,ko:K10996
KEGG Pathwayko03010,ko04218,map03010,map04218
KEGG ModuleM00177
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0001932,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0007049,GO:0007093,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007338,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0009314,GO:0009411,GO:0009416,GO:0009566,GO:0009628,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010212,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010972,GO:0016043,GO:0016310,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030717,GO:0030720,GO:0030896,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0035038,GO:0035861,GO:0036211,GO:0040020,GO:0042325,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044778,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070193,GO:0070194,GO:0070925,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0104004,GO:1901360,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2000241,GO:2000242
EggNOG free text desc.meiotic DNA integrity checkpoint
EggNOG OGsKOG3999@1,KOG3999@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400
Hectar predicted targeting categoryother localisation
Exons8
Model size774
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18404.4959.1prot_H-elongata_contig18404.4959.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18404 834..4724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.9825613-CDS-H-elongata_contig18404:833..9591622930055.9825613-CDS-H-elongata_contig18404:833..959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 834..959 +
1691679263.5441227-CDS-H-elongata_contig18404:833..9591691679263.5441227-CDS-H-elongata_contig18404:833..959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 834..959 +
1622930055.9947793-CDS-H-elongata_contig18404:1257..14281622930055.9947793-CDS-H-elongata_contig18404:1257..1428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 1258..1428 +
1691679263.5564303-CDS-H-elongata_contig18404:1257..14281691679263.5564303-CDS-H-elongata_contig18404:1257..1428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 1258..1428 +
1622930056.018325-CDS-H-elongata_contig18404:1819..19001622930056.018325-CDS-H-elongata_contig18404:1819..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 1820..1900 +
1691679263.5691793-CDS-H-elongata_contig18404:1819..19001691679263.5691793-CDS-H-elongata_contig18404:1819..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 1820..1900 +
1622930056.0384536-CDS-H-elongata_contig18404:2703..28161622930056.0384536-CDS-H-elongata_contig18404:2703..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 2704..2816 +
1691679263.5869114-CDS-H-elongata_contig18404:2703..28161691679263.5869114-CDS-H-elongata_contig18404:2703..2816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 2704..2816 +
1622930056.050205-CDS-H-elongata_contig18404:3038..31001622930056.050205-CDS-H-elongata_contig18404:3038..3100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 3039..3100 +
1691679263.6037228-CDS-H-elongata_contig18404:3038..31001691679263.6037228-CDS-H-elongata_contig18404:3038..3100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 3039..3100 +
1622930056.0655134-CDS-H-elongata_contig18404:3610..36571622930056.0655134-CDS-H-elongata_contig18404:3610..3657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 3611..3657 +
1691679263.611438-CDS-H-elongata_contig18404:3610..36571691679263.611438-CDS-H-elongata_contig18404:3610..3657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 3611..3657 +
1622930056.0820398-CDS-H-elongata_contig18404:4015..40951622930056.0820398-CDS-H-elongata_contig18404:4015..4095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 4016..4095 +
1691679263.618891-CDS-H-elongata_contig18404:4015..40951691679263.618891-CDS-H-elongata_contig18404:4015..4095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 4016..4095 +
1622930056.0990205-CDS-H-elongata_contig18404:4630..47241622930056.0990205-CDS-H-elongata_contig18404:4630..4724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 4631..4724 +
1691679263.6265526-CDS-H-elongata_contig18404:4630..47241691679263.6265526-CDS-H-elongata_contig18404:4630..4724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18404 4631..4724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18404.4959.1

>prot_H-elongata_contig18404.4959.1 ID=prot_H-elongata_contig18404.4959.1|Name=mRNA_H-elongata_contig18404.4959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp
GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYR
IESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRA
LEINVVHDIPVKVMPANEASYYRPPEVQLELPRQRSLRTVIDRMKAIDKF
LYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNISSVK
VDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPV
MDAGDDLS
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mRNA from alignment at H-elongata_contig18404:834..4724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18404.4959.1 ID=mRNA_H-elongata_contig18404.4959.1|Name=mRNA_H-elongata_contig18404.4959.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3891bp|location=Sequence derived from alignment at H-elongata_contig18404:834..4724+ (Himanthalia elongata Himel1 dioecious)
GGTCTCATTGGGGCCATCGAAAAAATAGGGGAGGCGTGCATCGTGCACCT GGCCGAGAACACTCTCCATCTCTCCGTTCACGAGAGTGGATCCGATGGGG TTGATGTCTACGCCGAGTTGCAGCAGGTTCAAACGACACGGGGTTGGGCG AGTGTGTGTGGGGGTGAGGGGCGATGATGCACGTGCAATGATATAGAGCT TGAGCTCAAAATCGACCCACTGTACCCAGAGTACTCACGCTGCTGCCGTG CGATAGACGCCGCGATCGTTGTCGACGCACCGACCCTTTGCGTTCGGCAA GCGCGCATCCATTTTTACGTCTGGCTTCCGATCACGATTGTCTTTTTAAG TGTTGGCTTGACCACCTCAAAAGGCAAGAGCGTTCGCTAACTCCACGAAC GCTGATCCCTGTTGCGCGTAACAGGCTATGCTGTTCCACGAGTACCGAAT AGAGAGCCGAGCGGGCAACGAGATCCTCTTCGAGGCGAACGCTTCCCTTC TCCTGCAAGCGCTCAACTCCGGCCGCACGGCGCCGACGTGCCAGATCAAG CTGGCGAAACGGGCGGGCCAACCGTGCCTCTCGGTAGAGACGCGGGTGAG GCTTGAGAGGAGGTGGGACGGGGAAGGTGGGCGGCGAACGTGTGAAATGC TAAGTGTTGAGGTACGTGACGGCTTCTGTAGAATGGTTCCTGGCGTTGCA TGTTGCGACCTCTTGTGTATTTCAAAGCAGCGTATATCTATGTTCGTGGT GTGTTTAGATTCCAGCAGTCTAGCAAAAGGCAGCGACGGCGTGGCGAGCT TCGGTCTTTCCGCGCAAATGCCATTTTTTTTGCATTTGGAAATTTGGTGC TGTTTCTTCTCCCTCCCGTGGTGTCTTGCCGATACATCCCGTTTTCAGCA CAATCCCTTGTTTTCCTTCCCCCCCTCGACCCCAATCATACGCCTCGGTC GTCCTTAAACTCCTTCAAAAATGGCGTGGGAAAAAGGCGTTGGAAATCAA TGTGGTGCACGACATCCCCGTTAAGGTCATGCCGGCCAATGAGGCGTCTT ACTATCGACCACCGGAGGTCCAAATGCCCCAGGCAGGTGCCCCCTTGACC CCAATGAAATCTTTTTCAACCCGTGTCCCGAGTGGTGGCCGTTGGGATTC GCGCAAAAGCGTATCGTGTGATCTTGCGCCTCGCGGACCTTGGGGAAGCG ATCAAAGAGTTGCCGTCTCGCGATACCAAATTATCACGTGCGAACTGGGG CAGGGAAAAATCCAGGTGTATTCGGTACGGTAGGCACCGGTACCCCTTTT TTCTAAAACTGGATACCGGTAACGGCAGTACCAGAATCCATATCGTACCG AACTTAACGAAATGTCCAATACCGGTATGGATGTTGTACCGAGCTTACCA AAGTATCCGGTACTGGTATTAATAAACCGAACTTAGCGAAGTGTCTGGTA CCGGTAATACCGGCCTGTATACCTCGGTACGTACCATACCGAACACATCC TTGAAAAAATAATTTTCCCTGTTCAGCTGAACAGAAACAGGAGGAGGCAA CCAAATCCGGTTGATCCTTACTCTGTTATATGTGATGACGTCATGACAAT ACATATTACTTTTGTAGTCGCAACGCAAGACCGTTACACACACGGTACTC TTCAAGCGTCTCCGGAGCGGGGAACGCGGCCGAGACACGGTTCTGACCAC GTACCGCCTTGGGACCACAGGTGCCCTTTATTTTCTCTCTCTTTTCTTCC TCTCCTGTTGAAAAAATCAGCCTAAAAAGTCGTGATTTATCATTATCTAC TTCAGTATAATATTTTTATCACGTCCTCTTTCCTGGTGTGTCGTTTCCGT GTTTCCCTCTCGACCCGAAGGTCCAGTTGGAGCTGCCGCGTCAGCGCTCT CTGCGCACGGTAATCGATCGCATGAAAGCAATCGACAAGTTTCTCTACGT GGACGCTGACATGGGAGGACAACTCGTCTTCAGGTGGGCGACAATTGGAA TGCCTTTGGTATGTGTCAGTCCAGCCGACCTACCTATCTACTCACCTACC GCCAAAAGCATCTACCTCCGCGAGGAACAAACTAGCTGGGGGAAACTTTT AAAATTGTGTCCGTTCCATACAGAGTTTCTTAGATGGGATGTAAGGCATT GCGACCTAGGGGCCCTCCACATTCGCCCCCTCCCCCCTCTCCCGGCCCTG TTGAGCAGGGTCGAGAAGGCGGACGCAACGATCAAGACGTTCTATACCAA CCTCACACCACGCTTCGGTAAGCCTTGATTGAGCTATTATAATTTTTATC TTGTACCCTGGCAATTGTAACAGATTAGCCCGTGTGTGTATTGTCCTATA TACTCTTTAATTAACTTATGCTCCTCCAGGATGATTTTTAAACTAGAGCT ACACTAAGTATATGTGTGTTTGTTTTTTGTGTGTATATATATATTCCTTC GTTTGTTACCCATTTTAACAGCGAGAGCCACGAGAGAAGCGATAAACAAT ACTGCTGCTGCTGTGTGGTGATACTCGTGCGGCAGTATCGTAGTTGCTTC TTGACGCTATGGAGACATGCCATCGGTTAGATATATAACTGGAGGTAGAT ATTGCTGCAATCACAACGCTTTTCTGTCAAACCCAGCGCCTGCAATCATC ACGATCATAACATTCCACCGTATACCGGCAATCGAAGGGCTCTCATCATT TATCATTTTTTATACCTCTAATATTTTAGCTCTGTCATATCTCATCTTGA CGTGTCGTGCTTGGCTCGTTTCCCTAGAGGCGATGGACGAGGAGCGATGT AGGAAAAACATATCCAGCGTGAAGGTGCGTTGATCCGAGCTCCTGGTAGC CCTCACGATAAAGCGCGAGCGCCGACATGGCGCGAAGCTGTGCCGTGGAA CTTATTTATTTCATTTTTCTTAACTCTCTCTGAAGAGATCGACGCATCTG ATCCTGCTCTCAGCGATCTCCACAAGGAATCAGATTGTCACACGGGGATA ACAACTTCCGACTCTCCACGAAAACAAAGCGTTCCGGTACTTTTAAGGAG TAGATCGTGTCGACTGAAGCAATATTAACAAATACATCCAATGCGCACGT ATTTAATTCGAATGTTGCGAGAATCGCTTCGAAAAAAGCCTCCTCGCGGT TTATGACGGTTACAACTCGATAACGTCGGCAGGTGGACGTGAAGAAGCTC TCCGCGGTTCTCTCCATGTACGCCCTTCGCTTCGAGACAGCGATATGCTG CATGATCGGCGGGTAGGTGAAGAGGGTACACAGCAGCAGCAGCTGTAATT CCCCTTTTGCAGCATACCTAGTCGCGTCTCCCTTGGCGCTCTTCCCTCCC CTAACACCACGCCTCGCTGGATTTTTATGCCCTAGAGCAGGAAAATAGCG CTCGCAACGTGCGCATCGAGGCCAGCGGCCTTTTTTATAAGCGTCTTCCG CTCTCAAGAAATACGCTGTCCGGCGATACCATGCTATTTGCGTCCCCGCC GTGTACGTGGTTCAACTATATTAGACCCATTGGTAGTATCTGTTTAAAGT TACAAAGTCATAACGCGCAAATGAAGAGACATCCCAGCATAAATTTACCA CCACGCCTTCGTCCCCCCCCCCCCCCCCCCCCCCCCCCTTTCTCTCCCCC CTTCTCTCCCCCACTCTCTCCCCCCCCCCCCAAGTCNNNNNNNNNNTCTT TAAAGTTACAAAGTCATAACCCCCAAATAAAGAGACACCCCACCAAAATT TTACCCCCCCCCCTTCGCCCCCCCCCCCCCCCCTCCCTCGTCTTTAGGTA CTCCCTGGTGCTCCACGTGATCCTCGCGCCAAACGGAATTGGAAACTTGA CGTATTACGTGCCCGTGATGGACGCTGGTGATGACCTTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig18404:834..4724+

>mRNA_H-elongata_contig18404.4959.1 ID=mRNA_H-elongata_contig18404.4959.1|Name=mRNA_H-elongata_contig18404.4959.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at H-elongata_contig18404:834..4724+ (Himanthalia elongata Himel1 dioecious)
GGTCTCATTGGGGCCATCGAAAAAATAGGGGAGGCGTGCATCGTGCACCT
GGCCGAGAACACTCTCCATCTCTCCGTTCACGAGAGTGGATCCGATGGGG
TTGATGTCTACGCCGAGTTGCAGCAGGGTCTCATTGGGGCCATCGAAAAA
ATAGGGGAGGCGTGCATCGTGCACCTGGCCGAGAACACTCTCCATCTCTC
CGTTCACGAGAGTGGATCCGATGGGGTTGATGTCTACGCCGAGTTGCAGC
AGGCTATGCTGTTCCACGAGTACCGAATAGAGAGCCGAGCGGGCAACGAG
ATCCTCTTCGAGGCGAACGCTTCCCTTCTCCTGCAAGCGCTCAACTCCGG
CCGCACGGCGCCGACGTGCCAGATCAAGCTGGCGAAACGGGCGGGCCAAC
CGTGCCTCTCGGTAGAGACGCGGGCTATGCTGTTCCACGAGTACCGAATA
GAGAGCCGAGCGGGCAACGAGATCCTCTTCGAGGCGAACGCTTCCCTTCT
CCTGCAAGCGCTCAACTCCGGCCGCACGGCGCCGACGTGCCAGATCAAGC
TGGCGAAACGGGCGGGCCAACCGTGCCTCTCGGTAGAGACGCGGGCGTTG
GAAATCAATGTGGTGCACGACATCCCCGTTAAGGTCATGCCGGCCAATGA
GGCGTCTTACTATCGACCACCGGAGGCGTTGGAAATCAATGTGGTGCACG
ACATCCCCGTTAAGGTCATGCCGGCCAATGAGGCGTCTTACTATCGACCA
CCGGAGGTCCAGTTGGAGCTGCCGCGTCAGCGCTCTCTGCGCACGGTAAT
CGATCGCATGAAAGCAATCGACAAGTTTCTCTACGTGGACGCTGACATGG
GAGGACAACTCGTCTTCAGGTCCAGTTGGAGCTGCCGCGTCAGCGCTCTC
TGCGCACGGTAATCGATCGCATGAAAGCAATCGACAAGTTTCTCTACGTG
GACGCTGACATGGGAGGACAACTCGTCTTCAGCAGGGTCGAGAAGGCGGA
CGCAACGATCAAGACGTTCTATACCAACCTCACACCACGCTTCGCAGGGT
CGAGAAGGCGGACGCAACGATCAAGACGTTCTATACCAACCTCACACCAC
GCTTCGAGGCGATGGACGAGGAGCGATGTAGGAAAAACATATCCAGCGTG
AAGAGGCGATGGACGAGGAGCGATGTAGGAAAAACATATCCAGCGTGAAG
GTGGACGTGAAGAAGCTCTCCGCGGTTCTCTCCATGTACGCCCTTCGCTT
CGAGACAGCGATATGCTGCATGATCGGCGGGTGGACGTGAAGAAGCTCTC
CGCGGTTCTCTCCATGTACGCCCTTCGCTTCGAGACAGCGATATGCTGCA
TGATCGGCGGGTACTCCCTGGTGCTCCACGTGATCCTCGCGCCAAACGGA
ATTGGAAACTTGACGTATTACGTGCCCGTGATGGACGCTGGTGATGACCT
TTCGGTACTCCCTGGTGCTCCACGTGATCCTCGCGCCAAACGGAATTGGA
AACTTGACGTATTACGTGCCCGTGATGGACGCTGGTGATGACCTTTCG
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