mRNA_H-elongata_contig18404.4959.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: D7FRE2_ECTSI (Checkpoint protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE2_ECTSI) HSP 1 Score: 433 bits (1114), Expect = 5.910e-152 Identity = 222/263 (84.41%), Postives = 240/263 (91.25%), Query Frame = 1
Query: 1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPP-----EVQLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVMDAGDDLS 774
G+IGAIEKIG AC+VHL E +HLSV ESGS+GVDVYAEL Q MLFHEYRIESRAGN ILFEANASLLLQALNSG+T+PTCQIKLAKRAGQPCLS+ETRALEI VVHDIPVKVMPANEA YY PP +VQLELPRQRSLRTV+DRMKAIDKFL+VDADMGGQLVF RVEKADATIKTFY+NLTPRFE MD CRKN+SSVKVDVKKL+AV+SMYALRF+TAICC+IGGYSLVLHVIL+P IGNLTYYVPVMDAGDDL+
Sbjct: 17 GVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVVDRMKAIDKFLFVDADMGGQLVF-RVEKADATIKTFYSNLTPRFEEMDANTCRKNMSSVKVDVKKLAAVMSMYALRFDTAICCIIGGYSLVLHVILSPINIGNLTYYVPVMDAGDDLA 278
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A7S2SUZ2_9STRA (Checkpoint protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUZ2_9STRA) HSP 1 Score: 246 bits (627), Expect = 3.700e-77 Identity = 128/263 (48.67%), Postives = 180/263 (68.44%), Query Frame = 1
Query: 1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDV--YAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVMDAGDD 768
G+ +EKIG +VHL++ ++ L + G DV ++ L+Q LFH++RIES++GN IL + LL AL+S R AP CQ+KL KR GQ L +ETRALE++V+HDIPV VM A+E YY PP+V QLELP R+L+TVIDR+K I +++Y+ +M G L R E I+T+++NL PR +++DE C +N +VKVD KKL+ VLS Y+LRF++ I C+I GYSLV+HVIL+P+ G LT+Y+PVM D+
Sbjct: 60 GVAATLEKIGPLGVVHLSDTSIQLCIRNDSGQGDDVLAFSALEQKELFHDWRIESQSGNCILLQLTLQNLLDALHSARNAPQCQLKLTKRNGQAALCLETRALEVDVIHDIPVTVMRASEYQYYCPPDVPQPQVQLELPMSRNLKTVIDRLKNISRYIYLHGEMTGALTL-RAETDSLVIQTYFSNLRPRLDSLDES-CEENRGTVKVDTKKLATVLSSYSLRFDSIIMCLIEGYSLVVHVILSPSNCGTLTFYLPVMSINDE 320
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A7S1TZY9_9STRA (Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZY9_9STRA) HSP 1 Score: 224 bits (570), Expect = 3.230e-69 Identity = 122/260 (46.92%), Postives = 168/260 (64.62%), Query Frame = 1
Query: 1 GLIGAIEKIGEAC----IVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCR-KNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPV 750
G+I +EK ++HL+ L++ + ++ V+AEL LF EYRIES++ + IL EA + L +A SGR AP C +KL KR GQPCL +ETRALE++V HDIPVKV+ A E Y PPEV QLELP R LRTV+DR+K D+++ +D DM G L R + +A+IKTF+ NL+PRF+ D+E N+++V+VD +KL+ VL+ Y + E AI C + G S VLHV LAP G+G +TYY+PV
Sbjct: 17 GVIMCLEKATAGATPTVLLHLSPGGAKLALPTASTEEPQVFAELAADKLFAEYRIESQSDDCILLEAGLANLARAFRSGRAAPLCLLKLTKRRGQPCLCLETRALEVDVTHDIPVKVLKAAEIEAYAPPEVPAPSVQLELPASRQLRTVVDRLKPFDRYVSLDGDMHGSLTL-RAQSGEASIKTFFPNLSPRFDGFDDEAAAANNVATVRVDGRKLANVLAFYGVPCEAAIACFVEGVSFVLHVFLAPAGVGTVTYYLPV 275
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A7R9U1B3_9STRA (Checkpoint protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B3_9STRA) HSP 1 Score: 207 bits (528), Expect = 3.490e-64 Identity = 100/182 (54.95%), Postives = 132/182 (72.53%), Query Frame = 1
Query: 220 SGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPV 750
SGRTAP CQ+KL KR GQPCL +ETRALE++V HDIPVKV+ A+E Y PPEV QLEL + R LRT++DR+K DK+LY+D+ M G + RV+ + T+KTF+ NLTPRF+ MDE+ N +V+VD KKL++VL+ YAL E AI C + GY+ ++HV LAP +G LTYY+P+
Sbjct: 2 SGRTAPLCQLKLTKRGGQPCLCLETRALEVDVTHDIPVKVLKASEIEAYAPPEVPSPTVQLELMQSRQLRTIVDRLKVFDKYLYIDSSMAGNMTL-RVQSGEVTVKTFFPNLTPRFDGMDEDAAIDNEVTVRVDGKKLASVLAFYALSCECAIACFVEGYTFIIHVFLAPRSVGTLTYYLPI 182
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A4D9CSQ4_9STRA (Checkpoint protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSQ4_9STRA) HSP 1 Score: 203 bits (517), Expect = 2.570e-61 Identity = 112/264 (42.42%), Postives = 170/264 (64.39%), Query Frame = 1
Query: 1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRF-EAM---DEERCRKN-----ISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPV 750
G+ E+ G +C+++L+E ++ + + GSD V ++E+QQ +F EYRI S A N ILFE S L++A +S +TA +IKLAKRAGQPC+ +E RAL++ ++H++P++VM A + YY PP+V QLELP RS+RTV++R K +D+F +VD DM G L R++ ++TFY+NL PR+ E M DE+ R S+K+D +K + L +++++AICCMI LVLHV LA + +G LT Y+P+
Sbjct: 17 GVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRIKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLERFKIMDRFCFVDGDMSGALRL-RLQNDRCHVQTFYSNLIPRYVEGMTDGDEDMRRTEEGGSACCSIKLDSRKFLSALHFMTMKYDSAICCMIEESCLVLHVTLAGH-VGTLTLYLPM 278
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A7S3YAY1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAY1_HETAK) HSP 1 Score: 200 bits (508), Expect = 8.480e-61 Identity = 101/195 (51.79%), Postives = 141/195 (72.31%), Query Frame = 1
Query: 1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEE 570
GLI +EK+ + C+++L E+++ +S+ ES D + V++E+ Q LF +YRIES + N IL E + L +AL SGR AP CQ+KLAKR G+PCL+VETRALE+++ HD+PVK++ + ++ PEV QLELPR RS RTVIDR+K I++ +Y+DADM G + F RV+ +A IKTFY+NLTPRFE DEE
Sbjct: 18 GLISILEKVSQVCVIYLTESSMRISIKES-QDDIQVFSEISQERLFTDYRIESLSNNCILLEVGTANLGRALASGRRAPACQLKLAKRGGRPCLAVETRALEVDIAHDLPVKLLRPGDVRFHLAPEVPRPQVQLELPRGRSFRTVIDRVKGINQHVYIDADMSGTITF-RVQTDNAVIKTFYSNLTPRFETGDEE 210
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A836CCR8_9STRA (Checkpoint protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCR8_9STRA) HSP 1 Score: 161 bits (408), Expect = 3.880e-45 Identity = 110/277 (39.71%), Postives = 155/277 (55.96%), Query Frame = 1
Query: 4 LIGAIEKIGEA-CIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQ-PCLSVETR--ALEINVVHDIPVK-----VMPANEASYYRPP-----EVQLELPRQRSLRTVIDRMKA-----------IDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDE--ERCRKNISSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVM 753
L+ +EK+ + C++ L+++ + ++V +G D V +AELQ +F +Y + KLAKRAG P L VE+ +E+NV DIPVK +M A EA YY+ P +VQLE+P QRS+R V+DRMK IDK+LY+DA+M GQLV R+E ATIKTF+T L+PR+E M+ + R N +++KVD KKL+ VL +Y + FE AI C + SL+ HV LA + IG T+Y PVM
Sbjct: 18 LVATLEKVSSSNCVILLSKDLMRITVVATGPDDVQAFAELQPEHVFEDYNM--------------------------------KLAKRAGGVPHLVVESHMSTMEMNVAQDIPVKASGRFLMNAEEADYYKAPVVPVSQVQLEMPVQRSMRAVVDRMKGKCSPPGKRCRCIDKYLYLDANMRGQLVV-RLETDSATIKTFFTQLSPRYEGMERGPQHNRDNKATLKVDAKKLATVLQVYGMSFEGAILCFVENVSLITHVFLAAS-IGTATFYQPVM 260
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A6G0XB13_9STRA (Checkpoint protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XB13_9STRA) HSP 1 Score: 145 bits (365), Expect = 7.770e-39 Identity = 90/249 (36.14%), Postives = 139/249 (55.82%), Query Frame = 1
Query: 31 EACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYR-----PPEVQLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMDEERCRKNI---SSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVM 753
E C V L E + ++ SG D V Y L + LF + IESRA N I F + +AL SG+ A ++L KR G+ LS+ + ++++++ +IP++V+ A YR PP V LE+P RSLRT+ DR+K + K++ + A M G L RVE ++T YTNL R + +D+E +I S+V+VD K +S +LS+ + +CC++ +LV+H IL G+ T YVPV+
Sbjct: 8 EMCFVTLNEERMSFALKTSGED-VQTYVHLNVSKLFSDVVIESRANNHIAFALGIANFSRALQSGKEASGVLLRLLKREGRSFLSLRAKTVDLDIIQNIPIEVVSMTTAENYREPNVPPPTVALEMPSLRSLRTITDRLKVMQKYILLQAGMDGTLRL-RVESDAFALQTLYTNLRSRADLVDDENEDMDIPPTSTVRVDAKHISKMLSVDGNAVMSVLCCLVDTQALVMHAILMEQ-FGSFTCYVPVV 253
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: A0A024UMF7_9STRA (Checkpoint protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMF7_9STRA) HSP 1 Score: 136 bits (342), Expect = 4.590e-35 Identity = 92/261 (35.25%), Postives = 140/261 (53.64%), Query Frame = 1
Query: 31 EACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYR-----PPEVQLELPRQRSLRTVIDRMKAIDKFLYVDADMGGQLVFSRVEKADATIKTFYTNLTPRFEAMD-------EERCRKNI--------SSVKVDVKKLSAVLSMYALRFETAICCMIGGYSLVLHVILAPNGIGNLTYYVPVM 753
+ C V L E + ++ SG D V + L A +F + IESRA N I F + +AL SG+ A ++L KR G+ LS+ R ++++++ +IP++V+ A YR PP V LE+P R+LRT+ DR+KA+ KFL V A M G L RV+ ++T +TNL R + D EE N+ SSV+VD + S +LS+ T +CC++ +LV+H +L +G G+ T YVPV+
Sbjct: 29 DMCFVVLNEERMSFAMKTSGED-VQTFVHLNIAKVFGDVVIESRADNNIAFALGIANFSRALQSGKEASGIMLRLLKRDGRSFLSLRARTVDLDIIQNIPIEVVSMATAESYREPNIPPPTVALEMPPLRALRTITDRLKAMQKFLLVQAGMDGTLRL-RVQSDTIVLQTLHTNLRCRPDLADDPTSKDGEEADGYNVDETNNFAASSVRVDARHASKMLSVDGNAVLTVLCCLVDQQALVVHAVLV-DGFGSFTCYVPVV 286
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Match: W7TDG5_9STRA (Checkpoint protein hus1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDG5_9STRA) HSP 1 Score: 134 bits (336), Expect = 4.850e-35 Identity = 65/147 (44.22%), Postives = 101/147 (68.71%), Query Frame = 1
Query: 1 GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRIESRAGNEILFEANASLLLQALNSGRTAPTCQIKLAKRAGQPCLSVETRALEINVVHDIPVKVMPANEASYYRPPEV-----QLELPRQRSLRTVID 426
G+ E+ G +C+++L+E ++ + + GSD V ++E+QQ +F EYRI S A N ILFE S L++A +S +TA ++KLAKRAGQPC+ +E RAL++ ++H++P++VM A + YY PP+V QLELP RS+RTV++
Sbjct: 17 GVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18404.4959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18404.4959.1 >prot_H-elongata_contig18404.4959.1 ID=prot_H-elongata_contig18404.4959.1|Name=mRNA_H-elongata_contig18404.4959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp GLIGAIEKIGEACIVHLAENTLHLSVHESGSDGVDVYAELQQAMLFHEYRback to top mRNA from alignment at H-elongata_contig18404:834..4724+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18404.4959.1 ID=mRNA_H-elongata_contig18404.4959.1|Name=mRNA_H-elongata_contig18404.4959.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3891bp|location=Sequence derived from alignment at H-elongata_contig18404:834..4724+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18404:834..4724+ >mRNA_H-elongata_contig18404.4959.1 ID=mRNA_H-elongata_contig18404.4959.1|Name=mRNA_H-elongata_contig18404.4959.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at H-elongata_contig18404:834..4724+ (Himanthalia elongata Himel1 dioecious)back to top |