mRNA_H-elongata_contig184029.4958.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: D7FZ49_ECTSI (NAD-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.160e-40 Identity = 98/202 (48.51%), Postives = 126/202 (62.38%), Query Frame = 1
Query: 10 KKVVITGGLGLLGRRILRHLLPPS-GSVRPAGRAVDVLIIDKNPIDAT--------------DGKLSN----------TAFGC-----DSTTSTAVSTVQGELSSAETTAAIKEFLAGG------SDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGANVSDETKLLPQ 507
+K V++GGLGLLG+RIL+H++ G VR V+I+D P+ A D + N TA G D +++ AVS V+G+LSS++ AAIK F G ++ +S ++S+FHLASVMSGQGE DF EALRVN++GT SLL TCR+IGGRPRFVFASS AAFGGG V+DETKLLPQ
Sbjct: 2 QKFVLSGGLGLLGQRILQHIVSSGHGCVR-------VMIVDTAPLQAAKSGGPPTAAPGITGDPAVGNGAKCEVLGSSTARGAAAPIADDSSTGAVSVVRGDLSSSDVAAAIKSFAVGDDGGGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLLDTCRQIGGRPRFVFASSIAAFGGGEQVTDETKLLPQ 196
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: D5RJW7_9PROT (NAD dependent epimerase/dehydratase family protein n=2 Tax=Roseomonas TaxID=125216 RepID=D5RJW7_9PROT) HSP 1 Score: 90.1 bits (222), Expect = 1.830e-18 Identity = 61/167 (36.53%), Postives = 90/167 (53.89%), Query Frame = 1
Query: 13 KVVITGGLGLLGRRILRHLLPPSGSVRPAGRAVD-VLIIDKNPIDATDGKLSNTAFGCDSTTSTAVSTVQGELSSAETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGA--NVSDETKLLP 504
K+++TGG G LG R++R LL G +P A D +L +D P D + V+++ G++S + + G+D V ++HLA+V+SGQ E DF+ ++RVNV+GT +LL+ R G RPRFVFASS A FGG V + L+P
Sbjct: 2 KIIVTGGAGFLGSRVIRALLAGQGQ-KPGLPAFDSILSVDLAPCPVEDAR---------------VASLTGDISDPDFARQVI-----GADT-----VGVYHLAAVLSGQSEQDFDLSMRVNVDGTRALLEAARATGNRPRFVFASSLAVFGGEMPETVPESMALMP 142
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: A0A382WBF4_9ZZZZ (3Beta_HSD domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382WBF4_9ZZZZ) HSP 1 Score: 86.3 bits (212), Expect = 2.040e-18 Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 1
Query: 13 KVVITGGLGLLGRRILRHLLPP---SGSVRPAGRAVDVLIIDKNPID-ATDGKLSNTAFGCDSTTSTAVSTVQGELSSAETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGAN---VSDETK 495
KV+ITGG G LG ++ R LL +GS D+LI D+ + AT G + T F ++G++S+ ET + + +S+FHLASV+SG+GE +F+ A++VN+EG ++ + CR + PR VFASS A FGG VSD TK
Sbjct: 2 KVIITGGGGFLGNQLARALLKKEKLTGSSGENETIDDLLIFDRQISEQATKGLENRTTF------------IEGDISNRETVNGLFD----------RNDISVFHLASVVSGEGEQNFDLAMKVNLEGGLNVFRACRNLDSLPRVVFASSVAVFGGSRMPKVVSDNTK 147
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: A0A2E2UPJ2_9DEIN (NAD-dependent epimerase n=1 Tax=Trueperaceae bacterium TaxID=2026798 RepID=A0A2E2UPJ2_9DEIN) HSP 1 Score: 89.4 bits (220), Expect = 3.930e-18 Identity = 67/175 (38.29%), Postives = 89/175 (50.86%), Query Frame = 1
Query: 13 KVVITGGLGLLGRRILRHLLP------PSGSVRPAGRAVDVLIIDKN-PIDATDGKLSNTAFGCDSTTSTAVSTVQGELSSAETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGAN---VSDETKLLPQ 507
KVVITGG G +G R+ RHLL PSG+ P R +L+ D+ P DG + F + G++S ET ++ + + +S+FHLASV+SG GE DF+ A+RVN+ G + + R G PR VFASS A FGG VSD TK PQ
Sbjct: 2 KVVITGGAGFVGLRLARHLLNRGTLIGPSGNQEPIER---LLLFDQTVPEFRPDGLDNRVEF------------ISGDISDRETVF----------NLINQKDISVFHLASVVSGGGEKDFDLAIRVNLHGALHIFEALRAQEGSPRLVFASSIAVFGGDTMPSIVSDNTKQTPQ 151
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: A0A1Z8WE37_9BACT (Epimerase domain-containing protein n=4 Tax=Verrucomicrobia TaxID=74201 RepID=A0A1Z8WE37_9BACT) HSP 1 Score: 89.0 bits (219), Expect = 5.340e-18 Identity = 59/172 (34.30%), Postives = 91/172 (52.91%), Query Frame = 1
Query: 13 KVVITGGLGLLGRRILRHLLPPSGSVRPAGRAVDV---LIIDKN-PIDATDGKLSNTAFGCDSTTSTAVSTVQGELSSAETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGAN---VSDETKLLPQ 507
KV+ITGG G LG ++ HLL +G+ ++ ++ DKN P+ +D ++ G++S I E +S+SIFHLAS++SG+ E+ +++A+RVN++G ++ + R I GRPR VFASS A+FGG A +SD K PQ
Sbjct: 2 KVIITGGGGFLGSQLANHLLQKETLTGRSGKQEEIKQIILFDKNFPVSNSDNRIRE---------------FSGDISDLNPIKLINE---------KSESISIFHLASMVSGECEVQYDDAIRVNLDGGRNIFEMARTINGRPRVVFASSIASFGGAAMPAPISDIAKQTPQ 149
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: A0A350R0H5_9BACT (NAD-dependent epimerase n=2 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A350R0H5_9BACT) HSP 1 Score: 89.0 bits (219), Expect = 5.910e-18 Identity = 67/175 (38.29%), Postives = 91/175 (52.00%), Query Frame = 1
Query: 13 KVVITGGLGLLGRRILRHL-------LPPSGSVRPAGRAVDVLIIDKNPIDATDGKLSNTAFGCDSTTSTAVSTVQGELSSAETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGAN---VSDETKLLPQ 507
KVV+TG G +G +++R L L PSG V+ + L I P ++ G S +F V+G+LS+ E +I + ++ +FHLA+++SG GE DF+ +RVN+EGT LL CR GR R VFASS A FGG A V DETK LPQ
Sbjct: 2 KVVVTGAGGFIGTQLVRELCQRGTLALHPSGEVKISSIVAADLRI---PEESRKGLPSWVSF------------VEGDLSTDEAVDSI---------IPQEEDFLLFHLAAIVSGDGERDFDLCIRVNLEGTVKLLDACRNSRGRARIVFASSLAVFGGEACPPVVGDETKPLPQ 152
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: A0A2C6XZJ6_9PROT (NAD-dependent epimerase n=2 Tax=Roseomonas TaxID=125216 RepID=A0A2C6XZJ6_9PROT) HSP 1 Score: 88.6 bits (218), Expect = 6.820e-18 Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 1
Query: 13 KVVITGGLGLLGRRILRHLLPPSGSVRPAGRAVDVLIIDKNPIDATDGKLSNTAFGCDSTTSTAVSTVQGELSS-AETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGAN--VSDETKLLPQ 507
K+++TGG G LG R+++ LL +G V ++ +D P D + VS+V G +S A AA+ + +V+++H+A+V+SGQ E DF+ + VN++GT +LL+ CR +G PRFVFASS A FGG V ++ LLPQ
Sbjct: 2 KIIVTGGAGFLGTRLIKALLARAGQVEGLPAFESIVSVDLAPCAVDDPR---------------VSSVTGNVSDPAFIRAAV-----------TPDTVAVYHMAAVVSGQAEADFDLGMSVNLDGTRALLEACRALGTTPRFVFASSLAVFGGPMPEVVPEDLALLPQ 143
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: UPI0018E0174B (SDR family oxidoreductase n=1 Tax=Roseomonas sp. KE0001 TaxID=2479201 RepID=UPI0018E0174B) HSP 1 Score: 87.8 bits (216), Expect = 1.300e-17 Identity = 62/164 (37.80%), Postives = 86/164 (52.44%), Query Frame = 1
Query: 13 KVVITGGLGLLGRRILRHLLPPSGSVRPAGRAVDVLIIDKNPIDATDGKLSNTAFGCDSTTSTAVSTVQGELSSAETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGA-NVSDETKLL 501
K+++TGG G LG R++R LL G+ R ++ +D P D + V +V G++ A F+ D ++V I+HLA+V+SGQ E DF+ +LRVNV+GT +LL+ R G RPRFVFASS A FGG V ET L
Sbjct: 2 KIIVTGGAGFLGSRVIRALLS-DGAARGVPAFDSIVSVDLAPCPVEDAR---------------VRSVTGDI-------ADPAFIRSLVDA---ETVGIYHLAAVLSGQSEEDFDLSLRVNVDGTRALLEAARATGRRPRFVFASSLAVFGGAMPEVVPETMAL 139
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: UPI0018DEFF46 (SDR family oxidoreductase n=2 Tax=Roseomonas TaxID=125216 RepID=UPI0018DEFF46) HSP 1 Score: 87.4 bits (215), Expect = 1.830e-17 Identity = 61/163 (37.42%), Postives = 83/163 (50.92%), Query Frame = 1
Query: 16 VVITGGLGLLGRRILRHLLPPSGSVRPAGRAVDVLIIDKNPIDATDGKLSNTAFGCDSTTSTAVSTVQGELSSAETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGANVSDETKLLP 504
+V+TGG G LG R++R LL GS VL +D P D + VS+V G+++ LAG V ++V +FHLA+V+SGQ E +F+ +RVN++GT +LL+ R G PRFVFASS A FGG V L P
Sbjct: 3 IVVTGGAGFLGSRVIRALLAARGSKDGLPDFEGVLSVDLAPCPVEDAR---------------VSSVVGDIADPA--------LAGR--VIDAETVGVFHLAAVLSGQSEAEFDVGMRVNLDGTRALLEAARATGHAPRFVFASSVAVFGGEMPVVVPESLAP 140
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Match: A0A2D5MTZ2_9BACT (NAD-dependent epimerase (Fragment) n=4 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MTZ2_9BACT) HSP 1 Score: 86.7 bits (213), Expect = 2.210e-17 Identity = 60/172 (34.88%), Postives = 92/172 (53.49%), Query Frame = 1
Query: 13 KVVITGGLGLLGRRILRHLLPPSGSVRPAG---RAVDVLIIDKN-PIDATDGKLSNTAFGCDSTTSTAVSTVQGELSSAETTAAIKEFLAGGSDVSSDQSVSIFHLASVMSGQGEMDFEEALRVNVEGTASLLQTCREIGGRPRFVFASSTAAFGGGAN---VSDETKLLPQ 507
K++ITGG G LG ++ LL +G + ++ +IDKN P+ D ++ + G++S +T IK + S+SIFHLAS++SG+ E +++AL+VN++G ++ + REI GRPR VFASS A+FGG A V+D K PQ
Sbjct: 2 KIIITGGGGFLGSQLASRLLQKGTLTGQSGEQEKIEEICLIDKNFPVSNLDNRVKE---------------ISGDISDRDT---IKF------SIEKSDSISIFHLASMVSGECEEQYDDALQVNLDGGRNIFEIAREIKGRPRVVFASSIASFGGAAMRTPVTDSAKQTPQ 149 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184029.4958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig184029.4958.1 >prot_H-elongata_contig184029.4958.1 ID=prot_H-elongata_contig184029.4958.1|Name=mRNA_H-elongata_contig184029.4958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp MSEKKVVITGGLGLLGRRILRHLLPPSGSVRPAGRAVDVLIIDKNPIDATback to top mRNA from alignment at H-elongata_contig184029:281..1011+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig184029.4958.1 ID=mRNA_H-elongata_contig184029.4958.1|Name=mRNA_H-elongata_contig184029.4958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=731bp|location=Sequence derived from alignment at H-elongata_contig184029:281..1011+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig184029:281..1011+ >mRNA_H-elongata_contig184029.4958.1 ID=mRNA_H-elongata_contig184029.4958.1|Name=mRNA_H-elongata_contig184029.4958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig184029:281..1011+ (Himanthalia elongata Himel1 dioecious)back to top |