mRNA_H-elongata_contig183952.4956.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183952.4956.1
Unique NamemRNA_H-elongata_contig183952.4956.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.460e-20
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   46 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 219
            +GS  KCYV +T K GCF+ LDGGVSGRV+LK L++RFVSDPA+EFPPG+LVAGKV++
Sbjct: 1800 VGSTAKCYVVATGKSGCFVILDGGVSGRVLLKHLSDRFVSDPAQEFPPGKLVAGKVLA 1857
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-18
Identity = 39/58 (67.24%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   46 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 219
            +GS  KCYV +T+K GCF+ L+GGVSGRV+LK L++RFVSDPA+EFP G+LVAGKV++
Sbjct: 1742 VGSTAKCYVVATSKSGCFVILNGGVSGRVLLKHLSDRFVSDPAQEFPAGKLVAGKVLA 1799
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A4S384_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S384_OSTLU)

HSP 1 Score: 70.9 bits (172), Expect = 1.280e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 SPLSPQLYVDYMALCIGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 219
            SP  P++  D   L  G R K YV +T+K GCF+ L  G+     L +LA+ F++DPAK FPPG+LV G+++S
Sbjct: 1293 SPTDPEI-TDISNLVPGQRVKGYVKATSKKGCFIALSRGIDAMCKLSNLADSFIADPAKTFPPGKLVEGRIVS 1364
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A2R6XEU3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XEU3_MARPO)

HSP 1 Score: 67.4 bits (163), Expect = 2.130e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   40 LCIGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 219
            L +G RT+ YV S +K GCF+ L   V GR+++K+L++ FV+DPA+ F PG +V G++IS
Sbjct: 1411 LSVGLRTQAYVKSASKKGCFVVLSRSVEGRILIKNLSDTFVADPAESFTPGMVVRGRIIS 1470
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A7S2H4N6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H4N6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.350e-11
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   37 ALCIGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVIS 219
            A  +G   + +V +TN  GCF+++  G++GRV LKDLA+RF+ +P  EFP G+LV GKV S
Sbjct:  259 APAVGDVVRGFVLATNGNGCFIQVTKGLTGRVQLKDLADRFIKNPEMEFPSGKLVMGKVKS 319
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A6G0XPZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPZ0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.900e-10
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   46 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKV 213
            +GS    YV +   GGCF+RL   V+ RV+L+DL++ FV +PA +FPPG LVAG+V
Sbjct: 1292 LGSIVTGYVATVGSGGCFVRLHRSVTARVLLRDLSDDFVKEPAAKFPPGTLVAGRV 1347
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: W7TCI2_9STRA (Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCI2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.600e-10
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   49 GSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKVI 216
            GS TK YV  T+  GCF+RL   V+ RV++KDLA+ F++ P + FP G+LVAG+V+
Sbjct: 1633 GSVTKGYVVGTSTKGCFVRLSKNVTARVLIKDLADGFITSPMEAFPVGKLVAGRVL 1688
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A7S4MZ58_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZ58_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.600e-10
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   61 KCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKV 213
            + YV  TNK GCF+RL   V GRVMLK++++ F+ DPA  FP GRLV G+V
Sbjct: 1605 QAYVIDTNKRGCFVRLSRNVEGRVMLKEMSDGFLPDPAAMFPQGRLVVGRV 1655
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BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A1W0AB06_9STRA (rRNA biogenesis protein rrp5 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AB06_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.540e-10
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   46 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKV 213
            +G   + YV S   GGCF+R+    + RV+L+DL++ +V +PAK+FPPG LVAG+V
Sbjct: 1281 VGDLVQGYVASVTSGGCFVRIHRSRTARVLLRDLSDDYVKEPAKQFPPGTLVAGRV 1336
[Close]
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Match: A0A485LII2_9STRA (Aste57867_21818 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LII2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.690e-9
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   46 IGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLANRFVSDPAKEFPPGRLVAGKV 213
            +G+    YV +   GGCF+RL    + RV+L+DL++ F+ DPA  FPPG LVAG+V
Sbjct: 1309 LGALVSGYVAAVTAGGCFVRLSRSQTARVLLRDLSDDFIKDPAAVFPPGTLVAGRV 1364
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183952.4956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LPP1_9PHAE2.460e-2070.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRR9_ECTSI1.030e-1867.24rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A4S384_OSTLU1.280e-1245.21Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
A0A2R6XEU3_MARPO2.130e-1148.33Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A7S2H4N6_9STRA5.350e-1149.18Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6G0XPZ0_9STRA1.900e-1051.79Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W7TCI2_9STRA2.600e-1051.79Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidace... [more]
A0A7S4MZ58_9STRA2.600e-1056.86Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1W0AB06_9STRA3.540e-1048.21rRNA biogenesis protein rrp5 n=1 Tax=Thraustotheca... [more]
A0A485LII2_9STRA1.690e-948.21Aste57867_21818 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183952contigH-elongata_contig183952:46..264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog2880.D7FRR9
Preferred nameRRP5
KEGG koko:K14792,ko:K20353
GOsGO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG0539@1,KOG1070@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.8449547-CDS-H-elongata_contig183952:45..2641622930055.8449547-CDS-H-elongata_contig183952:45..264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183952 46..264 -
1691679263.490499-CDS-H-elongata_contig183952:45..2641691679263.490499-CDS-H-elongata_contig183952:45..264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183952 46..264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183952.4956.1prot_H-elongata_contig183952.4956.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183952 46..264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183952.4956.1

>prot_H-elongata_contig183952.4956.1 ID=prot_H-elongata_contig183952.4956.1|Name=mRNA_H-elongata_contig183952.4956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
SPLSPQLYVDYMALCIGSRTKCYVTSTNKGGCFLRLDGGVSGRVMLKDLA
NRFVSDPAKEFPPGRLVAGKVIS
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mRNA from alignment at H-elongata_contig183952:46..264-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183952.4956.1 ID=mRNA_H-elongata_contig183952.4956.1|Name=mRNA_H-elongata_contig183952.4956.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig183952:46..264- (Himanthalia elongata Himel1 dioecious)
TCTCCCCTTTCTCCCCAATTATATGTCGACTACATGGCTTTGTGTATCGG
CTCGCGGACAAAGTGCTACGTGACGAGCACGAACAAGGGTGGTTGCTTTC
TGCGGCTCGACGGAGGAGTGTCTGGCCGGGTGATGCTCAAGGACCTGGCC
AATCGGTTCGTCTCGGACCCCGCAAAAGAGTTTCCCCCAGGGAGGCTTGT
TGCTGGCAAGGTCATCTCT
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Coding sequence (CDS) from alignment at H-elongata_contig183952:46..264-

>mRNA_H-elongata_contig183952.4956.1 ID=mRNA_H-elongata_contig183952.4956.1|Name=mRNA_H-elongata_contig183952.4956.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig183952:46..264- (Himanthalia elongata Himel1 dioecious)
TCTCCCCTTTCTCCCCAATTATATGTCGACTACATGGCTTTGTGTATCGG
CTCGCGGACAAAGTGCTACGTGACGAGCACGAACAAGGGTGGTTGCTTTC
TGCGGCTCGACGGAGGAGTGTCTGGCCGGGTGATGCTCAAGGACCTGGCC
AATCGGTTCGTCTCGGACCCCGCAAAAGAGTTTCCCCCAGGGAGGCTTGT
TGCTGGCAAGGTCATCTCTTCTCCCCTTTCTCCCCAATTATATGTCGACT
ACATGGCTTTGTGTATCGGCTCGCGGACAAAGTGCTACGTGACGAGCACG
AACAAGGGTGGTTGCTTTCTGCGGCTCGACGGAGGAGTGTCTGGCCGGGT
GATGCTCAAGGACCTGGCCAATCGGTTCGTCTCGGACCCCGCAAAAGAGT
TTCCCCCAGGGAGGCTTGTTGCTGGCAAGGTCATCTCT
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