mRNA_H-elongata_contig18393.4955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18393.4955.1
Unique NamemRNA_H-elongata_contig18393.4955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18393.4955.1 vs. uniprot
Match: A0A6H5JQW8_9PHAE (DUF2470 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQW8_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 7.760e-60
Identity = 103/184 (55.98%), Postives = 139/184 (75.54%), Query Frame = 1 
Query:    4 DLVLLATKFGTMIESVDNIDNVHVAELDRDHMELEVVYCDQGESTCVAVAVPISFPRHCHDEECIIGVIHDLREKEDVQVNSSEVRLPKKKISAELMETIARICVVMNRDFQDELASFVQAFGNKGSDRPTGACEMSELTPDGFIVTSALFPEESVTIASPKECLSASDFQEQILALSEQAISI 555
            +LV +A K+ ++IESV+ +D + + ELD DHM+L+VVYCDQGE TCVAVAVP+ FP HC+D +C+IGVIH+L + E+V+   +   +P K +S EL+ TIARIC VMNRDFQDEL +FV+AFG   +D   G CEM  L+PDGF+V S   P++ V+IA  KEC SA DFQ+QIL +SE+A++I
Sbjct:  128 NLVRVAQKYDSLIESVEGVDAITIKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELEQAENVEPRPAMANVPPKYVSPELIGTIARICAVMNRDFQDELRNFVRAFGGPVADEMVGNCEMLSLSPDGFMVRSDANPDKPVSIAFSKECQSALDFQKQILLVSERAMAI 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18393.4955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQW8_9PHAE7.760e-6055.98DUF2470 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18393contigH-elongata_contig18393:1416..7071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF2470
Ec32 orthologEc-01_011130.1
Exons5
Model size2025
Cds size525
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.7344034-UTR-H-elongata_contig18393:1415..28791622930055.7344034-UTR-H-elongata_contig18393:1415..2879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18393 1416..2879 -
1691679263.4095771-UTR-H-elongata_contig18393:1415..28791691679263.4095771-UTR-H-elongata_contig18393:1415..2879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18393 1416..2879 -
1622930055.8137577-UTR-H-elongata_contig18393:7035..70711622930055.8137577-UTR-H-elongata_contig18393:7035..7071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18393 7036..7071 -
1691679263.4715207-UTR-H-elongata_contig18393:7035..70711691679263.4715207-UTR-H-elongata_contig18393:7035..7071Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18393 7036..7071 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.7497125-CDS-H-elongata_contig18393:2879..31011622930055.7497125-CDS-H-elongata_contig18393:2879..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 2880..3101 -
1691679263.4197416-CDS-H-elongata_contig18393:2879..31011691679263.4197416-CDS-H-elongata_contig18393:2879..3101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 2880..3101 -
1622930055.762195-CDS-H-elongata_contig18393:3341..34101622930055.762195-CDS-H-elongata_contig18393:3341..3410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 3342..3410 -
1691679263.4324992-CDS-H-elongata_contig18393:3341..34101691679263.4324992-CDS-H-elongata_contig18393:3341..3410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 3342..3410 -
1622930055.7763135-CDS-H-elongata_contig18393:3669..37521622930055.7763135-CDS-H-elongata_contig18393:3669..3752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 3670..3752 -
1691679263.4426334-CDS-H-elongata_contig18393:3669..37521691679263.4426334-CDS-H-elongata_contig18393:3669..3752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 3670..3752 -
1622930055.7877653-CDS-H-elongata_contig18393:5114..52121622930055.7877653-CDS-H-elongata_contig18393:5114..5212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 5115..5212 -
1691679263.4522386-CDS-H-elongata_contig18393:5114..52121691679263.4522386-CDS-H-elongata_contig18393:5114..5212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 5115..5212 -
1622930055.8032992-CDS-H-elongata_contig18393:6982..70351622930055.8032992-CDS-H-elongata_contig18393:6982..7035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 6983..7035 -
1691679263.461951-CDS-H-elongata_contig18393:6982..70351691679263.461951-CDS-H-elongata_contig18393:6982..7035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18393 6983..7035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18393.4955.1prot_H-elongata_contig18393.4955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18393 2880..7035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18393.4955.1

>prot_H-elongata_contig18393.4955.1 ID=prot_H-elongata_contig18393.4955.1|Name=mRNA_H-elongata_contig18393.4955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MIESVDNIDNVHVAELDRDHMELEVVYCDQGESTCVAVAVPISFPRHCHD
EECIIGVIHDLREKEDVQVNSSEVRLPKKKISAELMETIARICVVMNRDF
QDELASFVQAFGNKGSDRPTGACEMSELTPDGFIVTSALFPEESVTIASP
KECLSASDFQEQILALSEQAISIT*
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mRNA from alignment at H-elongata_contig18393:1416..7071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18393.4955.1 ID=mRNA_H-elongata_contig18393.4955.1|Name=mRNA_H-elongata_contig18393.4955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5656bp|location=Sequence derived from alignment at H-elongata_contig18393:1416..7071- (Himanthalia elongata Himel1 dioecious)
GCAGACCTCGTTCTTTTGGCGACGAAATTCGGCACGATGATCGAATCGGT
CGACAACATCGATAACGTACACGTGGCCGAGCTGGATAGGTAAGTAAGCG
AACGCAGTTGACACCAAAGCCTTATTTGAATGGTCTCAACATGTCGTATA
TATGACATTAAGATGTCGGATCATTGCATCTCACCCACCAGCAGAAGATT
CAGAATCCCACCGCTTGCATCTGCATCATCAGCGCCTCCATGATTAATTC
CCCAACTTTTTCCTCTCGCACTACGGGGACAGGGGAAAATTATTTTCCCT
GTTCAGCTGATCACGAGCAGAAGGCGACGAAATCCGGTTGATCATTCTGC
TAAAAGTGAGACCAACAACAACAACAACAACAACAACAACTAGGGAACGA
GAACTTGTTGCACGCTCGTTCGTCGGCATACGCGCCAAGTCATGTACTGT
ATATAGTATATAGAGTATCGTTTTATTACTACCTACAACAATATAAATCC
AGTCGTCATCTCGACTCTTAAGATATTATTTTTATTGTCGTTTCCGGAAA
TCAAACCGCCTATAACAAAGCACACAGCAGGCTCTATTAGAGCAGTCAGC
ACCATCGGCAATACTTTCGTGTGGCGTTTTTGTCCTGACAGACAGTTTAT
CCACCACTCAAACATGACGACGCGTGGTCCCCCGTGTTGATTTCCACCCA
ACCAAGCCGATGTGAAAAAGGTGCGGATGGTCAGAGAGATTGAGTGAGTT
CAGGACTTTCGAGAAAAGGCTTTGCCATTGGTGTGCCTTTGCCTCTTTTT
TTCCAATATCACTTTCTGCCGATGAGGTCCCTTCAACGTCCTATTCTATC
ATTATTAGAGGTTGCCAATACCACCTACCGGGATAGTATTTGTATTTACA
GTACCGTATTATTATTAAAAACATATGAACCAATGCAAACCGTCCGAACA
TCCACGCCTTCTTAGCACTATGAGAGGTGCAGTCCAGGGGATCAATTATC
GTCATGTTTTAGTGTGTGCAGTAGATCTAGCACTACAACCCTGCTCATCC
CACCTGTGGGGGGGCTAAGGGGGGTTGGGTTTTATTTCCCCTCTGTCCCC
CGTTCACGCCTACGGTGCCATTTTTCTCGCTACAGTGTCAGAGTAGACTA
TGGAAGTTCAATCCAATGGTGGTACTAATAGTGTTGTTGCTATGCTTTCT
CGCATTGTCATGATTTCCGATACTGTACATAACACATATGTTGCACCGAG
ATCCGAACTCAAGACTGTTTTCAACTTGTACTATTAATACACTAATATAT
ATCCTAGACTGTACGGCACTACCGGTATAATATACTGTACTATAATGCAC
TATAATATCGCGATCTATACTATATATACTATACTTTAGTATCATGCAAT
TACAATTATTTGCCAATTGAACCACCGGGGCGGGGTGTTTTTGAAGTCTG
GGAATATTGCCACTATACTGCTAAACTAATATAATTCCAAAGTAGTTAAT
TAGACCAATCAGCAAAGCGCCGCGTCAATCAATGGGGTTACATTATTTGG
AGTCGGAAAGAAACCATCTAGACCAATCCGCATTGACTTATCTAGGCGGT
TCATTCCTGGCCTCCACAGTACTAGGTTACCTCTGTGTGCACAAGGAAAA
GGTAAATGTATTTCATTTGGAAGCACATTAATCATGGTACCTCGTAGGTA
AGACGTATGTTATCCTATACTTCGTACAGAGGTACTATACATGATCTTCT
TTCTCCCTTCAATGTAAGGCAATATGCTCAGAAGGGGAAAGTGCCCCCGC
CTCCTTCGACTCTGCCGGCATTCGAACTCCCCGCCTCCCTCTACCGTCGC
CGAGAACAGAGACCACATGGAGCTCGAGGTAGTGTACTGCGATCAAGGGG
AGTCTACGTGCGTGGCGGTAGCGGTTCCCATCAGTTTCCCTCGTCACTGC
CACGACGGTGAGGATCAGGGTCCCCCCCCCATCTCCCATGTTCACTATGA
AGGAAGTGGTGCCCCTGCTCGTTACCGAGGTAATTTACACGTACACAGGA
ACTAGTGCTCATCCTGTTATGTGCTTAGGACTCTCTTTATGTGCAGGTTT
TTTGTTTTGTTTTTTTCTCTGTTTGGAGTGCCTGGCGCGATCGTCACCCC
TACTGACCCGTCTGATTTTCAACGTAGGTCCAGTACCCGATAAATTTGGT
GCATAACTTGCGAAGTTCCAGAGCTATATTTTCATCCACACAGCCGATCG
ATCGTCGACCCGGGATACAGTCCCCAAACTAACGACATCGAATGACGTCA
TGCCACCGATATCAAGGCAGCATGTATTTTTAAGGCATAATGACATCCGA
GAACCGTAATCGAGACCTTAAAATAAAAGTGGTGCCTGCTGCATGCCGTG
TTCGTTCTGTATTACTAAAAATATAGAATTATAGAGCCAATGGCTTCCTA
AATTAATTTTCCCTGTCCCTGTTTGCACCTGAGAATGTGGTCTCGCGAGA
CGAGCTCGGCCGTCCCCTCCTGTGTCAGTATTCTATTTGCAGTTGTTACT
GCTATCCTCGTGGAATCAAGTGATGAATTATGAATAATAAATAATGAATG
ACAAATTATGAATCAATAATAATGAATAACAAATTATGAACAATTAATAA
TTAATAATTAATAATCAATCACAAATTATGAATACAATAATGAAAAACAA
ATTATGAATAATAAATAATGAATGACAAATTATGAATCAATAATAATGAA
TAATGAAGAGTTATGGGTAGCAAGGGGGCTAGTGAAGTGATATCTTGGGG
TGTCAGAGCCCCCTACGGGAAACAGTACTGCATCGGGGGCTACTACTCGA
CCACCTAGAGCTATTATAGAGCTATTATAGAGGTTGTGGAGTTGTGAAGA
ACGAACAAAGAAAATAAAAGGCCGTGCAGGATGAAGCATGTCCAGCTGAG
AAAGTGTTTTTGCGTCTGTCGACATGTTCCGGCGCTGACCTTTGAGCGAC
CCTTTTAACGCGATCCGTTGTTACGAGCTTTAACGTAGTGGGTGACGTTA
ATTAGATATCTCCATCGCCAAAAACACGAGACACAAAAAAAATAACCCGA
CGACCCCCACAAGGTGTATGCTGCGCGTGCTGTAAACCATTGAGTGACGC
CGATGCTAACACCGATGCCGCCTTTGGCAAGATAACTTTGAGGAGATTTT
ATCGCGTTGTGGTGCGTATGTGACATTGAACCACGAACGGCTTAAAATAC
ACACCGCCCTATTCCTTGGGCCTGCCGGTGATGCTGGTGATGCTGCTGCT
GCTGCTGTTGCTGCGATAGAGGAATGCATCATCGGCGTCATCCATGACCT
GAGGGAAAAGGAAGATGTACAAGTCAACAGCAGCGAAGTCCGACTCCCGA
AGGTGAGGTTCTTGCTGCCTCCCCGCTACTGATTGTCCAGGTATCCGTCG
CTCTGCTCACTTTGTGTGGCGAGCACTCTGGCAAGCGTCCATAACGGGAC
GCGTTTGGCGAAGCTCGCCCCCGTCCCCCCACCCCCTCCATGTGAGAGCA
ACGCTCCGTCCCCCCGAGGAAACATGGTCAATGGTAAAAGCTAAGCCACA
AAAACCTTGGGTACGCCCCCTCCAACCCCCCCCCCCCCTCCCCCTTACCT
CCGGCACACAGAAAAAAATCTCTGCGGAGCTTATGGAGACCATAGCTAGG
ATATGCGTGGTGATGAACCGCGACTTTCAGGTGAGCTCTGTCGATGCGTT
TAGCTGTACCTGGTCGGCGTTATTGTGCCAGTCGAGGGACAGTTACAGGG
CAACAGAAGGGAAACTGCTGTAGGAATGTGTCAAAAAAAAATATGCACCC
ACCGTGACTCCCCTTAGCACAGCGTGGCACGATATATGTCCCCCCGTAGC
GTTCATGTTTTCGTTGCCCGGTAACTCCCCCCCTTCACTTATCATACCCA
AAACCCTCCATCCCTTCAAGGATGAGCTCGCCAGCTTCGTGCAAGCATTC
GGGAACAAGGGCTCGGACCGACCGACCGGAGCCTGCGAGATGTCGGAGCT
GACGCCTGACGGATTCATAGTGACATCGGCGCTGTTCCCCGAGGAGTCCG
TGACGATCGCGTCCCCGAAGGAATGCCTCAGCGCCTCGGACTTCCAGGAG
CAGATCCTGGCCCTGTCCGAGCAGGCGATTTCGATCACCTAAGGATGGCG
TAGAGAGAGGGGGCACGTGAAGATGAGATGAGATGACCCGCCCCCTCTAG
CATACGCGACTTGACTGTATCAGCCGTAGAAGAAAACAATTGACGTCCAC
TAAAGCTACTCCCGTCGATAGCGCATCACCCAGTTGTCACAGGAGCGGGC
GTGGTAGGCGTCTCAGCTTTTGGTCATCCCGCTTCCTTCCCTGCAACCTT
TGGAACTCCTTTCTGTGTGTAGAGACCTGTAAAGACCATGATGAGGGGGA
GTCGAGGGAGGGAGGCGTTCCTTAGGTCTTAGACTAGCTCTTAGACCATT
GGCCTCGAGAAGGCGGAGAATGTCTATCGCCGATGGTCAAGGAGGAGCCA
TTACTGCGAGCACCGCTTAGCTGGATTTGGAGAGTAGGGGAAATGCGTTT
CCGGGAACACTCATGTGTCTAGCACGGGAGAGGGAGGGGCTAACGGAAGA
AGAGAGCGATAGAGTGACGAGAGAGGTCAATTAGAGTGCATTTGGCCCGT
CGGCAAGCCTGGGTGGGGGGATCCTTATATATTTTTGAGAATCACAGGGT
ATAAAAAGAACTGTGTTACAGTATTGTAGTTGACCCGAGGAGAGTAGCGT
GCTCTTGTGTGTGGTCTAATCGAAACATGAGGGTATCGTGTGTGCCGACC
GGTGTGTCACAGAGAGATGGGACACAAATAATAGGCGAAGACCAGTGCCT
CTGGCCTGTGCAGCGAACTCGATGCGGTATCTATTTTTTTGCGACCGAGT
CGCGGGAAGGATGTCTGCCGTGGTCAAGCAGTTTTCCGCATCCGCCGAGA
GGCGACGACAAGTTGGAACAGTACATCGCGGTGCAGAGCTTGAAGTTTGG
TCTATGAAAAAAATGAGAGCGCGCTGGGCAGCGTTCACCGAATAAAAAAA
TGACAGGGCGGTGTAGCCGTCAGGTGTGTGGCTTGAGTCTCGCCGTGTGG
GCTCTTGATTGGCGAGTGCCAATCTATGCTCGTTGTATATACTTACTTGT
TAATTATAAAGTACGAAGAAAGCTCATTGGAGACGGACTCGGTTTCACAC
CCTACGCGTTCCTTGTATTTTTATTATTTCCAAAATTCAAAAGTCACCTA
GAAATATTAAGGCGTGTTTTTGGTTGTGACTGGCGATTACAGAGAGCGGC
GGCTAGTGTATACCCCATCGTCACATGGGGAGTATATGGAACAATGTACA
GCAGATGCGTCGGATCCGTGGACGCGGCAGGCTGTTGAGTTCTCTTGATC
GACTCAAGCGAGGGTATTAATGTGGTGGATCTTGCTGAGGTGGATAGGAA
GTTGAGTAGCATGTCGTCGCGCGTGACCTGGCCACGCGGTAAAGTTTCTC
GAGGGAATGGAGAAGTCCATTTTTATATTAAAAAATAGGTCCATATATAA
ACATATTTGGAGGAGAAATATATAGCGTTGAAGTATATATTTAGACTAAT
AAATAT
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Coding sequence (CDS) from alignment at H-elongata_contig18393:1416..7071-

>mRNA_H-elongata_contig18393.4955.1 ID=mRNA_H-elongata_contig18393.4955.1|Name=mRNA_H-elongata_contig18393.4955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig18393:1416..7071- (Himanthalia elongata Himel1 dioecious)
ATGATCGAATCGGTCGACAACATCGATAACGTACACGTGGCCGAGCTGGA
TAGATGATCGAATCGGTCGACAACATCGATAACGTACACGTGGCCGAGCT
GGATAGAGACCACATGGAGCTCGAGGTAGTGTACTGCGATCAAGGGGAGT
CTACGTGCGTGGCGGTAGCGGTTCCCATCAGTTTCCCTCGTCACTGCCAC
GACGAGACCACATGGAGCTCGAGGTAGTGTACTGCGATCAAGGGGAGTCT
ACGTGCGTGGCGGTAGCGGTTCCCATCAGTTTCCCTCGTCACTGCCACGA
CGAGGAATGCATCATCGGCGTCATCCATGACCTGAGGGAAAAGGAAGATG
TACAAGTCAACAGCAGCGAAGTCCGACTCCCGAAGAGGAATGCATCATCG
GCGTCATCCATGACCTGAGGGAAAAGGAAGATGTACAAGTCAACAGCAGC
GAAGTCCGACTCCCGAAGAAAAAAATCTCTGCGGAGCTTATGGAGACCAT
AGCTAGGATATGCGTGGTGATGAACCGCGACTTTCAGAAAAAAATCTCTG
CGGAGCTTATGGAGACCATAGCTAGGATATGCGTGGTGATGAACCGCGAC
TTTCAGGATGAGCTCGCCAGCTTCGTGCAAGCATTCGGGAACAAGGGCTC
GGACCGACCGACCGGAGCCTGCGAGATGTCGGAGCTGACGCCTGACGGAT
TCATAGTGACATCGGCGCTGTTCCCCGAGGAGTCCGTGACGATCGCGTCC
CCGAAGGAATGCCTCAGCGCCTCGGACTTCCAGGAGCAGATCCTGGCCCT
GTCCGAGCAGGCGATTTCGATCACCTAAGATGAGCTCGCCAGCTTCGTGC
AAGCATTCGGGAACAAGGGCTCGGACCGACCGACCGGAGCCTGCGAGATG
TCGGAGCTGACGCCTGACGGATTCATAGTGACATCGGCGCTGTTCCCCGA
GGAGTCCGTGACGATCGCGTCCCCGAAGGAATGCCTCAGCGCCTCGGACT
TCCAGGAGCAGATCCTGGCCCTGTCCGAGCAGGCGATTTCGATCACCTAA
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