mRNA_H-elongata_contig183863.4950.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183863.4950.1
Unique NamemRNA_H-elongata_contig183863.4950.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183863.4950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183863contigH-elongata_contig183863:163..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionERV/ALR sulfhydryl oxidase domain
Ec32 orthologEc-14_006970.1
Hectar predicted targeting categorysignal peptide
Exons1
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.0024378-CDS-H-elongata_contig183863:162..3871622930055.0024378-CDS-H-elongata_contig183863:162..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183863 163..387 -
1691679263.006781-CDS-H-elongata_contig183863:162..3871691679263.006781-CDS-H-elongata_contig183863:162..387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183863 163..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183863.4950.1prot_H-elongata_contig183863.4950.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183863 163..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183863.4950.1

>prot_H-elongata_contig183863.4950.1 ID=prot_H-elongata_contig183863.4950.1|Name=mRNA_H-elongata_contig183863.4950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MATLIRGFSLFFLLTPPITTVGRSNKSLFESSEHVHELNPDSFGLIADSA
EYWVINCYSSSCPHCTRFSPTVSEF
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mRNA from alignment at H-elongata_contig183863:163..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183863.4950.1 ID=mRNA_H-elongata_contig183863.4950.1|Name=mRNA_H-elongata_contig183863.4950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig183863:163..387- (Himanthalia elongata Himel1 dioecious)
ATGGCTACATTAATTCGAGGTTTTTCGCTGTTCTTCCTCCTCACTCCACC
TATTACTACTGTCGGGAGAAGCAACAAATCTCTCTTTGAGTCGAGTGAAC
ATGTCCACGAGCTAAATCCAGACTCCTTCGGGTTGATAGCAGATTCGGCA
GAGTATTGGGTCATCAACTGCTATTCTTCTAGCTGCCCGCATTGCACTCG
GTTTTCTCCTACGGTGAGTGAATTT
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Coding sequence (CDS) from alignment at H-elongata_contig183863:163..387-

>mRNA_H-elongata_contig183863.4950.1 ID=mRNA_H-elongata_contig183863.4950.1|Name=mRNA_H-elongata_contig183863.4950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig183863:163..387- (Himanthalia elongata Himel1 dioecious)
ATGGCTACATTAATTCGAGGTTTTTCGCTGTTCTTCCTCCTCACTCCACC
TATTACTACTGTCGGGAGAAGCAACAAATCTCTCTTTGAGTCGAGTGAAC
ATGTCCACGAGCTAAATCCAGACTCCTTCGGGTTGATAGCAGATTCGGCA
GAGTATTGGGTCATCAACTGCTATTCTTCTAGCTGCCCGCATTGCACTCG
GTTTTCTCCTACGGTGAGTGAATTTATGGCTACATTAATTCGAGGTTTTT
CGCTGTTCTTCCTCCTCACTCCACCTATTACTACTGTCGGGAGAAGCAAC
AAATCTCTCTTTGAGTCGAGTGAACATGTCCACGAGCTAAATCCAGACTC
CTTCGGGTTGATAGCAGATTCGGCAGAGTATTGGGTCATCAACTGCTATT
CTTCTAGCTGCCCGCATTGCACTCGGTTTTCTCCTACGGTGAGTGAATTT
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