mRNA_H-elongata_contig1838.4948.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1838.4948.1
Unique NamemRNA_H-elongata_contig1838.4948.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1838.4948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1838contigH-elongata_contig1838:13990..14385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930054.352625-CDS-H-elongata_contig1838:13989..142321622930054.352625-CDS-H-elongata_contig1838:13989..14232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1838 13990..14232 -
1691679262.9592416-CDS-H-elongata_contig1838:13989..142321691679262.9592416-CDS-H-elongata_contig1838:13989..14232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1838 13990..14232 -
1622930054.367291-CDS-H-elongata_contig1838:14334..143851622930054.367291-CDS-H-elongata_contig1838:14334..14385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1838 14335..14385 -
1691679262.9751363-CDS-H-elongata_contig1838:14334..143851691679262.9751363-CDS-H-elongata_contig1838:14334..14385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1838 14335..14385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1838.4948.1prot_H-elongata_contig1838.4948.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1838 13990..14385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1838.4948.1

>prot_H-elongata_contig1838.4948.1 ID=prot_H-elongata_contig1838.4948.1|Name=mRNA_H-elongata_contig1838.4948.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
CYNCHLRGHIQPECNIEPPVPTVHASGFMTEEVDTRAPTGVEQGLAFQVG
DGTETWYFDTGASGHMSPSSERMTNFRQCTKVLRVANGVNLPIEGKGN
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mRNA from alignment at H-elongata_contig1838:13990..14385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1838.4948.1 ID=mRNA_H-elongata_contig1838.4948.1|Name=mRNA_H-elongata_contig1838.4948.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig1838:13990..14385- (Himanthalia elongata Himel1 dioecious)
TGTTATAATTGCCACCTAAGAGGTCACATACAACCCGAATGCAATATTGA
GGTGAGAAAGAAATGTGGCGGTAGAGGACACGACGAGAGTAAGTGCTCCA
CCACAGCTGACGTGGAAACCGTTATGGCGGTAGAGGTTGACTCGGATTCG
GAGCCTCCGGTCCCTACCGTGCATGCATCCGGATTTATGACTGAAGAGGT
TGATACTCGCGCACCTACCGGGGTTGAACAAGGTTTGGCTTTCCAAGTCG
GAGACGGCACGGAAACCTGGTATTTCGATACTGGTGCGTCTGGCCACATG
TCACCTAGCTCAGAAAGGATGACTAACTTTCGACAGTGCACCAAAGTGCT
GCGTGTGGCAAACGGAGTAAATCTGCCGATCGAAGGTAAGGGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig1838:13990..14385-

>mRNA_H-elongata_contig1838.4948.1 ID=mRNA_H-elongata_contig1838.4948.1|Name=mRNA_H-elongata_contig1838.4948.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig1838:13990..14385- (Himanthalia elongata Himel1 dioecious)
TGTTATAATTGCCACCTAAGAGGTCACATACAACCCGAATGCAATATTGA
GTGTTATAATTGCCACCTAAGAGGTCACATACAACCCGAATGCAATATTG
AGCCTCCGGTCCCTACCGTGCATGCATCCGGATTTATGACTGAAGAGGTT
GATACTCGCGCACCTACCGGGGTTGAACAAGGTTTGGCTTTCCAAGTCGG
AGACGGCACGGAAACCTGGTATTTCGATACTGGTGCGTCTGGCCACATGT
CACCTAGCTCAGAAAGGATGACTAACTTTCGACAGTGCACCAAAGTGCTG
CGTGTGGCAAACGGAGTAAATCTGCCGATCGAAGGTAAGGGCAACCCTCC
GGTCCCTACCGTGCATGCATCCGGATTTATGACTGAAGAGGTTGATACTC
GCGCACCTACCGGGGTTGAACAAGGTTTGGCTTTCCAAGTCGGAGACGGC
ACGGAAACCTGGTATTTCGATACTGGTGCGTCTGGCCACATGTCACCTAG
CTCAGAAAGGATGACTAACTTTCGACAGTGCACCAAAGTGCTGCGTGTGG
CAAACGGAGTAAATCTGCCGATCGAAGGTAAGGGCAAC
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