prot_H-elongata_contig18371.4942.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18371.4942.1
Unique Nameprot_H-elongata_contig18371.4942.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length147
Homology
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 3.320e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            ME IVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGA+FLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLR+TFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLV+LADSRYNRHDKR
Sbjct:  588 MEMIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAIFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 733          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A7S3Y1X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1X9_HETAK)

HSP 1 Score: 276 bits (705), Expect = 1.260e-89
Identity = 128/146 (87.67%), Postives = 142/146 (97.26%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            ME I++KWDE+GVL++VLEKKL+FIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFG+PFQYTLSHVLRARLEYLR T Q+REGDFLTFDA+RQCAQC+GRV+RSKTDYG+++ ADSRYNRHDKR
Sbjct:  163 MEKIIAKWDEIGVLRKVLEKKLVFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGIPFQYTLSHVLRARLEYLRATHQVREGDFLTFDALRQCAQCVGRVLRSKTDYGVMLFADSRYNRHDKR 308          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A7S0FJQ4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJQ4_9STRA)

HSP 1 Score: 251 bits (641), Expect = 8.160e-82
Identity = 117/146 (80.14%), Postives = 138/146 (94.52%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            ME+I+S+WD +G+L+++ + KL+FIETKDVVETTLALDN++RACD GRGAVFLSVARGKV+EGI+FDRHYGRAV+MFGVPFQYTLSHVLRARLEYL+T +QIRE DFL FDA+RQ +QC+GRVIRSKTDYGL+VLADSRYNRHDKR
Sbjct:   63 MENIISEWDGMGILRQLTKHKLVFIETKDVVETTLALDNYRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMVLADSRYNRHDKR 208          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A7S1YWT9_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1YWT9_TRICV)

HSP 1 Score: 249 bits (635), Expect = 1.770e-81
Identity = 116/146 (79.45%), Postives = 136/146 (93.15%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            ME I+S+WD +GVL+++ + KL+FIETKDVVETTLALDN++RACD GRGAVFLSVARGKV+EGI+FDRHYGRAV+MFGVPFQYTLSHVLRARLEYL+T +QIRE DFL FDA+RQ +QC+GRVIRSKTDYGL++ ADSRYNRHDKR
Sbjct:   19 MESIISEWDGMGVLRQLTKHKLVFIETKDVVETTLALDNYRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKR 164          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A7S2M061_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M061_9STRA)

HSP 1 Score: 248 bits (633), Expect = 2.570e-81
Identity = 114/146 (78.08%), Postives = 135/146 (92.47%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            ME I+S+WD +G+L+++ + KL+FIETKDVVETTLALDNF+RACD GRGAVFLSVARGKV+EGI+FDRHYGRAV+MFGVPFQYTLSH+LRARLEYL+T +QIRE DFL FDA+RQ +QC+GRVIRSK DYGL++ ADSRYNRHDKR
Sbjct:   25 MESIISEWDGMGILRQLTKSKLVFIETKDVVETTLALDNFRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHILRARLEYLQTNYQIREQDFLNFDALRQASQCVGRVIRSKIDYGLMIFADSRYNRHDKR 170          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A8J9X831_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X831_PHATR)

HSP 1 Score: 251 bits (641), Expect = 6.890e-80
Identity = 115/146 (78.77%), Postives = 135/146 (92.47%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            ME ++S+WD +G+L+ + + KL+FIETKDVVETTLALDN++RACDCGRGAVFLSVARGKV+EGI+FDRHYGRAV+MFGVPFQYTLSH LRARLEYL+T +QIRE DFL FDAIRQ +QC+GRVIRSKTDYGL++ ADSRYNRHDKR
Sbjct:  246 MESLISEWDAIGILRELTKSKLVFIETKDVVETTLALDNYRRACDCGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHTLRARLEYLQTHYQIREQDFLNFDAIRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKR 391          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.130e-79
Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            ME IV++W E GVL +V EKKLIF+ETKDVVETTLALDNFKRACD GRGA+F SVARGKVAEGIDFDRHYGR VVMFGVPFQYTLSHVLRARLEYLR TFQIRE DFL FDA+RQ AQC+GRVIRSKTDYGL+VLADSRYNRHDKR
Sbjct:  591 MERIVAQWQESGVLSKVYEKKLIFLETKDVVETTLALDNFKRACDSGRGAIFFSVARGKVAEGIDFDRHYGRCVVMFGVPFQYTLSHVLRARLEYLRATFQIREADFLNFDALRQAAQCVGRVIRSKTDYGLMVLADSRYNRHDKR 736          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A484DXY6_BRELC (DNA helicase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXY6_BRELC)

HSP 1 Score: 253 bits (647), Expect = 2.200e-79
Identity = 119/146 (81.51%), Postives = 133/146 (91.10%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            ME I+ +WD LGVLKRVL  KL+FIETKD+VETTLALDN+K+ACDCGRGA+F SVARGKVAEGIDFDRHYGRAV++FG+PFQYTLS+ LRARLEYLR T QIREGDFLTFDA+RQ AQC GRV+RSKTDYGLV+ ADSRYNR DKR
Sbjct:  348 MEKIIGQWDSLGVLKRVLSSKLLFIETKDIVETTLALDNYKKACDCGRGALFFSVARGKVAEGIDFDRHYGRAVILFGIPFQYTLSNTLRARLEYLRYTHQIREGDFLTFDALRQAAQCAGRVLRSKTDYGLVIFADSRYNRADKR 493          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A2U1MI62_ARTAN (RAD3-like DNA-binding helicase protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MI62_ARTAN)

HSP 1 Score: 244 bits (622), Expect = 3.000e-79
Identity = 110/145 (75.86%), Postives = 131/145 (90.34%), Query Frame = 0
Query:    2 EHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            + IV+ W+E G+LK ++++KL+FIET+DVVETTLALDN+++ACDCGRGAVF SVARGKVAEGIDFDRHYGR V+MFGVPFQYTLS +L ARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG+++ AD RY RHDKR
Sbjct:   54 DAIVNSWNETGILKEIMQRKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYTRHDKR 198          
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A452XYN9_AEGTS (HELICc2 domain-containing protein n=4 Tax=Poaceae TaxID=4479 RepID=A0A452XYN9_AEGTS)

HSP 1 Score: 245 bits (626), Expect = 2.440e-78
Identity = 111/146 (76.03%), Postives = 133/146 (91.10%), Query Frame = 0
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 146
            M+ IV+ W+E+G+L+ +++ KL+FIET DVVETTLALDN+++ACDCGRGAVF SVARGKVAEGIDFDRHYGR V+MFGVPFQYTLS +LRARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG+++ AD RY+RHDKR
Sbjct:  193 MDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILRARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKR 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI3.320e-9197.26General transcription and DNA repair factor IIH he... [more]
A0A7S3Y1X9_HETAK1.260e-8987.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0FJQ4_9STRA8.160e-8280.14Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1YWT9_TRICV1.770e-8179.45Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A7S2M061_9STRA2.570e-8178.08Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A8J9X831_PHATR6.890e-8078.77Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A836CJZ4_9STRA1.130e-7986.30General transcription and DNA repair factor IIH he... [more]
A0A484DXY6_BRELC2.200e-7981.51DNA helicase n=1 Tax=Bremia lactucae TaxID=4779 Re... [more]
A0A2U1MI62_ARTAN3.000e-7975.86RAD3-like DNA-binding helicase protein n=1 Tax=Art... [more]
A0A452XYN9_AEGTS2.440e-7876.03HELICc2 domain-containing protein n=4 Tax=Poaceae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006555ATP-dependent helicase, C-terminalSMARTSM00491Cxpdneu3coord: 1..142
e-value: 6.4E-63
score: 225.0
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 1..143
e-value: 1.9E-32
score: 112.8
NoneNo IPR availableGENE3D3.40.50.300coord: 1..146
e-value: 1.3E-31
score: 111.5
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 1..146
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 1..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18371contigH-elongata_contig18371:277..1826 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18371.4942.1mRNA_H-elongata_contig18371.4942.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18371 277..1826 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18371.4942.1 ID=prot_H-elongata_contig18371.4942.1|Name=mRNA_H-elongata_contig18371.4942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGA
VFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTF
QIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006555ATP-dep_Helicase_C
IPR001945RAD3/XPD