mRNA_H-elongata_contig18371.4942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18371.4942.1
Unique NamemRNA_H-elongata_contig18371.4942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 3.320e-91
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            ME IVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGA+FLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLR+TFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLV+LADSRYNRHDKR
Sbjct:  588 MEMIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAIFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRSTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVILADSRYNRHDKR 733
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A7S3Y1X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1X9_HETAK)

HSP 1 Score: 276 bits (705), Expect = 1.260e-89
Identity = 128/146 (87.67%), Postives = 142/146 (97.26%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            ME I++KWDE+GVL++VLEKKL+FIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFG+PFQYTLSHVLRARLEYLR T Q+REGDFLTFDA+RQCAQC+GRV+RSKTDYG+++ ADSRYNRHDKR
Sbjct:  163 MEKIIAKWDEIGVLRKVLEKKLVFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGIPFQYTLSHVLRARLEYLRATHQVREGDFLTFDALRQCAQCVGRVLRSKTDYGVMLFADSRYNRHDKR 308
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A7S0FJQ4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJQ4_9STRA)

HSP 1 Score: 251 bits (641), Expect = 8.160e-82
Identity = 117/146 (80.14%), Postives = 138/146 (94.52%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            ME+I+S+WD +G+L+++ + KL+FIETKDVVETTLALDN++RACD GRGAVFLSVARGKV+EGI+FDRHYGRAV+MFGVPFQYTLSHVLRARLEYL+T +QIRE DFL FDA+RQ +QC+GRVIRSKTDYGL+VLADSRYNRHDKR
Sbjct:   63 MENIISEWDGMGILRQLTKHKLVFIETKDVVETTLALDNYRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMVLADSRYNRHDKR 208
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A7S1YWT9_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S1YWT9_TRICV)

HSP 1 Score: 249 bits (635), Expect = 1.770e-81
Identity = 116/146 (79.45%), Postives = 136/146 (93.15%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            ME I+S+WD +GVL+++ + KL+FIETKDVVETTLALDN++RACD GRGAVFLSVARGKV+EGI+FDRHYGRAV+MFGVPFQYTLSHVLRARLEYL+T +QIRE DFL FDA+RQ +QC+GRVIRSKTDYGL++ ADSRYNRHDKR
Sbjct:   19 MESIISEWDGMGVLRQLTKHKLVFIETKDVVETTLALDNYRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHVLRARLEYLQTHYQIREQDFLNFDALRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKR 164
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A7S2M061_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M061_9STRA)

HSP 1 Score: 248 bits (633), Expect = 2.570e-81
Identity = 114/146 (78.08%), Postives = 135/146 (92.47%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            ME I+S+WD +G+L+++ + KL+FIETKDVVETTLALDNF+RACD GRGAVFLSVARGKV+EGI+FDRHYGRAV+MFGVPFQYTLSH+LRARLEYL+T +QIRE DFL FDA+RQ +QC+GRVIRSK DYGL++ ADSRYNRHDKR
Sbjct:   25 MESIISEWDGMGILRQLTKSKLVFIETKDVVETTLALDNFRRACDSGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHILRARLEYLQTNYQIREQDFLNFDALRQASQCVGRVIRSKIDYGLMIFADSRYNRHDKR 170
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A8J9X831_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X831_PHATR)

HSP 1 Score: 251 bits (641), Expect = 6.890e-80
Identity = 115/146 (78.77%), Postives = 135/146 (92.47%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            ME ++S+WD +G+L+ + + KL+FIETKDVVETTLALDN++RACDCGRGAVFLSVARGKV+EGI+FDRHYGRAV+MFGVPFQYTLSH LRARLEYL+T +QIRE DFL FDAIRQ +QC+GRVIRSKTDYGL++ ADSRYNRHDKR
Sbjct:  246 MESLISEWDAIGILRELTKSKLVFIETKDVVETTLALDNYRRACDCGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHTLRARLEYLQTHYQIREQDFLNFDAIRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKR 391
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.130e-79
Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            ME IV++W E GVL +V EKKLIF+ETKDVVETTLALDNFKRACD GRGA+F SVARGKVAEGIDFDRHYGR VVMFGVPFQYTLSHVLRARLEYLR TFQIRE DFL FDA+RQ AQC+GRVIRSKTDYGL+VLADSRYNRHDKR
Sbjct:  591 MERIVAQWQESGVLSKVYEKKLIFLETKDVVETTLALDNFKRACDSGRGAIFFSVARGKVAEGIDFDRHYGRCVVMFGVPFQYTLSHVLRARLEYLRATFQIREADFLNFDALRQAAQCVGRVIRSKTDYGLMVLADSRYNRHDKR 736
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A484DXY6_BRELC (DNA helicase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXY6_BRELC)

HSP 1 Score: 253 bits (647), Expect = 2.200e-79
Identity = 119/146 (81.51%), Postives = 133/146 (91.10%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            ME I+ +WD LGVLKRVL  KL+FIETKD+VETTLALDN+K+ACDCGRGA+F SVARGKVAEGIDFDRHYGRAV++FG+PFQYTLS+ LRARLEYLR T QIREGDFLTFDA+RQ AQC GRV+RSKTDYGLV+ ADSRYNR DKR
Sbjct:  348 MEKIIGQWDSLGVLKRVLSSKLLFIETKDIVETTLALDNYKKACDCGRGALFFSVARGKVAEGIDFDRHYGRAVILFGIPFQYTLSNTLRARLEYLRYTHQIREGDFLTFDALRQAAQCAGRVLRSKTDYGLVIFADSRYNRADKR 493
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BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A2U1MI62_ARTAN (RAD3-like DNA-binding helicase protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MI62_ARTAN)

HSP 1 Score: 244 bits (622), Expect = 3.000e-79
Identity = 110/145 (75.86%), Postives = 131/145 (90.34%), Query Frame = 1 
Query:    4 EHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            + IV+ W+E G+LK ++++KL+FIET+DVVETTLALDN+++ACDCGRGAVF SVARGKVAEGIDFDRHYGR V+MFGVPFQYTLS +L ARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG+++ AD RY RHDKR
Sbjct:   54 DAIVNSWNETGILKEIMQRKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYTRHDKR 198
[Close]
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Match: A0A452XYN9_AEGTS (HELICc2 domain-containing protein n=4 Tax=Poaceae TaxID=4479 RepID=A0A452XYN9_AEGTS)

HSP 1 Score: 245 bits (626), Expect = 2.440e-78
Identity = 111/146 (76.03%), Postives = 133/146 (91.10%), Query Frame = 1 
Query:    1 MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTFQIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR 438
            M+ IV+ W+E+G+L+ +++ KL+FIET DVVETTLALDN+++ACDCGRGAVF SVARGKVAEGIDFDRHYGR V+MFGVPFQYTLS +LRARLEYLR TFQI+EGDFLTFDA+RQ AQC+GRVIRSK DYG+++ AD RY+RHDKR
Sbjct:  193 MDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILRARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKR 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18371.4942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI3.320e-9197.26General transcription and DNA repair factor IIH he... [more]
A0A7S3Y1X9_HETAK1.260e-8987.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0FJQ4_9STRA8.160e-8280.14Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1YWT9_TRICV1.770e-8179.45Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A7S2M061_9STRA2.570e-8178.08Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A8J9X831_PHATR6.890e-8078.77Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A836CJZ4_9STRA1.130e-7986.30General transcription and DNA repair factor IIH he... [more]
A0A484DXY6_BRELC2.200e-7981.51DNA helicase n=1 Tax=Bremia lactucae TaxID=4779 Re... [more]
A0A2U1MI62_ARTAN3.000e-7975.86RAD3-like DNA-binding helicase protein n=1 Tax=Art... [more]
A0A452XYN9_AEGTS2.440e-7876.03HELICc2 domain-containing protein n=4 Tax=Poaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18371contigH-elongata_contig18371:277..1826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score291.6
Seed ortholog evalue2.1e-76
Seed eggNOG ortholog2880.D8LDN2
Preferred nameERCC2
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001503,GO:0001701,GO:0001942,GO:0002244,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007272,GO:0007275,GO:0007346,GO:0007348,GO:0007399,GO:0007417,GO:0007568,GO:0008022,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008366,GO:0008544,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010001,GO:0010389,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010948,GO:0010972,GO:0012501,GO:0014003,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0021700,GO:0021782,GO:0022008,GO:0022010,GO:0022402,GO:0022404,GO:0022405,GO:0022607,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030198,GO:0030218,GO:0030282,GO:0030554,GO:0030855,GO:0030880,GO:0031214,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032288,GO:0032289,GO:0032291,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0033683,GO:0034101,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0040007,GO:0040016,GO:0042063,GO:0042303,GO:0042552,GO:0042592,GO:0042623,GO:0042633,GO:0043009,GO:0043062,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043249,GO:0043254,GO:0043388,GO:0043412,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045786,GO:0045893,GO:0045911,GO:0045930,GO:0045935,GO:0045944,GO:0045951,GO:0045995,GO:0046483,GO:0047485,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048646,GO:0048699,GO:0048709,GO:0048731,GO:0048820,GO:0048821,GO:0048856,GO:0048863,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0055029,GO:0060218,GO:0060255,GO:0060429,GO:0061515,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070816,GO:0070911,GO:0071103,GO:0071695,GO:0071704,GO:0071817,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098773,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902750,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1131@2759
Ec32 ortholog descriptionATP-dependent helicase, C-terminal
Ec32 orthologEc-19_001310.1
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size441
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18371.4942.1prot_H-elongata_contig18371.4942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18371 277..1826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.8169181-CDS-H-elongata_contig18371:276..4141622930053.8169181-CDS-H-elongata_contig18371:276..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18371 277..414 -
1691679262.7741318-CDS-H-elongata_contig18371:276..4141691679262.7741318-CDS-H-elongata_contig18371:276..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18371 277..414 -
1622930053.8345478-CDS-H-elongata_contig18371:690..8161622930053.8345478-CDS-H-elongata_contig18371:690..816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18371 691..816 -
1691679262.7887905-CDS-H-elongata_contig18371:690..8161691679262.7887905-CDS-H-elongata_contig18371:690..816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18371 691..816 -
1622930053.8603077-CDS-H-elongata_contig18371:1222..13151622930053.8603077-CDS-H-elongata_contig18371:1222..1315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18371 1223..1315 -
1691679262.7990956-CDS-H-elongata_contig18371:1222..13151691679262.7990956-CDS-H-elongata_contig18371:1222..1315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18371 1223..1315 -
1622930053.8754544-CDS-H-elongata_contig18371:1742..18261622930053.8754544-CDS-H-elongata_contig18371:1742..1826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18371 1743..1826 -
1691679262.8098316-CDS-H-elongata_contig18371:1742..18261691679262.8098316-CDS-H-elongata_contig18371:1742..1826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18371 1743..1826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18371.4942.1

>prot_H-elongata_contig18371.4942.1 ID=prot_H-elongata_contig18371.4942.1|Name=mRNA_H-elongata_contig18371.4942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
MEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGA
VFLSVARGKVAEGIDFDRHYGRAVVMFGVPFQYTLSHVLRARLEYLRTTF
QIREGDFLTFDAIRQCAQCIGRVIRSKTDYGLVVLADSRYNRHDKR*
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mRNA from alignment at H-elongata_contig18371:277..1826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18371.4942.1 ID=mRNA_H-elongata_contig18371.4942.1|Name=mRNA_H-elongata_contig18371.4942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1550bp|location=Sequence derived from alignment at H-elongata_contig18371:277..1826- (Himanthalia elongata Himel1 dioecious)
ATGGAGCACATCGTTTCCAAGTGGGACGAGCTGGGAGTTCTGAAGAGGGT
GCTCGAGAAGAAGCTAATTTTTATCGAGACCAAGGTGCTTTGATCGAACG
CCTTCAGACTGACTTACCCCTGACAGTGTGTGGGGGGGGGGGGGGGGGGT
ATTTTGTTTTGTACAGGGAAGAATAATGCACGTTGATGGTGTAGGTTGTG
CATGTTATGTTTTACCCCCCCCTGTCGACGACGCTCGGGTAGAGAGCGGA
TGCTCGATGCATGTCGATCAGGTTAATCGCTCCGGTATCGATCCTGTCCT
GTCGTTCAATCGTCAACCGACGCGGTCACCGCGGCACGATCGTCGTCAGC
GCGCGCCCTCACGATGCAACACGATTGATCAAAACCACGGAAAAGCTCGG
GAACTTTCCGTGATATATTTTTGGACCTAAAAACACTTTACCATGGAACC
GTATACCGCCTCCTATCCAACCTCACCGGTTTATATATATATATATATAT
ATAAATGTCAGGACGTGGTGGAGACCACCCTCGCTCTGGACAACTTCAAG
CGTGCTTGCGATTGCGGAAGAGGGGCGGTATTTCTCTCCGTTGCCAGGGG
AAAGGTGAGAGTAAATATGACCTTGGGATAGGAATTTGTAAAGATGAAAT
ACCTTATTACAGGGGGGGGGTGGGAGTTTGTAAAGATGAAATGCTTTATT
AGAGGGGGTGGGAGTTTGTAAAGATGAAATGCCTTATTAGAAGAGGGTGG
GAGTTTCTAAAGATGAAATTCCTTATTGGAGGGGGGGGGGCAAGGGCGGA
GGATATGGTGAATGTCGAGAGTCAGTCAGCAGGCCTTGCCTTGGTTCGAA
TAAGAGTCTCCATCCCGTACGAAAGCACCATCGTTGAAAGTCGCGTGGAT
CACATGGTAACCCTGTCAGCCGATTCAGAGGATTGAAATATGCAGTTATT
ATTCAATCCGTCAGAATCAACCGATGAATTGACTGATAAGTCGAGTGCTC
CGTCGGTCAGGTGGCGGAAGGCATCGACTTCGATCGCCACTACGGCAGAG
CTGTGGTAATGTTCGGCGTGCCGTTTCAGTACACCCTGAGCCACGTTCTC
AGAGCGAGGCTGGAATACCTGCGGACCACGTTTCAGGTAAAAGACTACTC
CCTCCGTCCTCTCCGCGCTTGTTTGTTTAAGAAAAACTGGATTGACTATT
GAAGCTCTTACCTTTTCACAGAATTAGGAAATATATACTGTACGGTATTG
TCTTTGAGTGCTTGTGCGTACTGGCATTCATGTTGAGTCTTTGTTGTGCC
CCCTTTTGTGCCCCTGGAAGGTTTAATGTTATGAAAATAATCCCCGTCGT
TTGGGTGGTTGATGGTTGTTGTCCGGGATGTTTTTGGTTGTGGGTTGGGG
GGGGGGGAGAAGATTCGTGAAGGTGATTTCCTCACGTTCGACGCGATTAG
ACAGTGCGCCCAGTGCATCGGGCGTGTCATCCGCAGCAAGACTGACTACG
GGCTCGTGGTGCTGGCCGACTCGCGTTACAACCGACACGACAAGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig18371:277..1826-

>mRNA_H-elongata_contig18371.4942.1 ID=mRNA_H-elongata_contig18371.4942.1|Name=mRNA_H-elongata_contig18371.4942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig18371:277..1826- (Himanthalia elongata Himel1 dioecious)
ATGGAGCACATCGTTTCCAAGTGGGACGAGCTGGGAGTTCTGAAGAGGGT
GCTCGAGAAGAAGCTAATTTTTATCGAGACCAAGATGGAGCACATCGTTT
CCAAGTGGGACGAGCTGGGAGTTCTGAAGAGGGTGCTCGAGAAGAAGCTA
ATTTTTATCGAGACCAAGGACGTGGTGGAGACCACCCTCGCTCTGGACAA
CTTCAAGCGTGCTTGCGATTGCGGAAGAGGGGCGGTATTTCTCTCCGTTG
CCAGGGGAAAGGACGTGGTGGAGACCACCCTCGCTCTGGACAACTTCAAG
CGTGCTTGCGATTGCGGAAGAGGGGCGGTATTTCTCTCCGTTGCCAGGGG
AAAGGTGGCGGAAGGCATCGACTTCGATCGCCACTACGGCAGAGCTGTGG
TAATGTTCGGCGTGCCGTTTCAGTACACCCTGAGCCACGTTCTCAGAGCG
AGGCTGGAATACCTGCGGACCACGTTTCAGGTGGCGGAAGGCATCGACTT
CGATCGCCACTACGGCAGAGCTGTGGTAATGTTCGGCGTGCCGTTTCAGT
ACACCCTGAGCCACGTTCTCAGAGCGAGGCTGGAATACCTGCGGACCACG
TTTCAGATTCGTGAAGGTGATTTCCTCACGTTCGACGCGATTAGACAGTG
CGCCCAGTGCATCGGGCGTGTCATCCGCAGCAAGACTGACTACGGGCTCG
TGGTGCTGGCCGACTCGCGTTACAACCGACACGACAAGAGGTGAATTCGT
GAAGGTGATTTCCTCACGTTCGACGCGATTAGACAGTGCGCCCAGTGCAT
CGGGCGTGTCATCCGCAGCAAGACTGACTACGGGCTCGTGGTGCTGGCCG
ACTCGCGTTACAACCGACACGACAAGAGGTGA
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