mRNA_H-elongata_contig183632.4940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183632.4940.1
Unique NamemRNA_H-elongata_contig183632.4940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183632.4940.1 vs. uniprot
Match: D7FVU2_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU2_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.100e-15
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 VSKVMEVVDWLSTQGDASYDFSVFLGGWFLGTPASELRRDNVVVFLAWAMYAKESADLSKSE 186
            + KV+E VDWLS Q DA   F  FL GWFLG   SEL+R N+VVFLAW +YAK+   LSK+E
Sbjct:   11 IHKVLETVDWLSEQEDADTTFESFLSGWFLGADCSELKRGNLVVFLAWTLYAKDVDMLSKAE 72
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BLAST of mRNA_H-elongata_contig183632.4940.1 vs. uniprot
Match: A0A7S2CLR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLR6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.480e-8
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 VSKVMEVVDWLSTQGDASYDFSVFLGGWFLGTPASELRRDNVVVFLAWAMYAKE 162
            ++KV+++V  +       YD   F+ GWFLG P SE+++DN+V F+ WAMY K+
Sbjct:   73 ITKVLDMVKMVP-----GYDMETFISGWFLGAPFSEVKKDNLVEFICWAMYNKD 121
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BLAST of mRNA_H-elongata_contig183632.4940.1 vs. uniprot
Match: A0A7S2RF55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF55_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.330e-5
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 VSKVMEVVDWLSTQGDASYDFSVFLGGWFLGTPASELRRDNVVVFLAWAMYAKESADLSKSE 186
            V +++E +D +      +Y    FL GWFLG    +++R+N + FLAWAM+ KE   LS  E
Sbjct:   56 VHRILETLDKIP-----AYGIHTFLQGWFLGARTEDVKRENAMEFLAWAMFNKEPETLSVGE 112
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BLAST of mRNA_H-elongata_contig183632.4940.1 vs. uniprot
Match: A0A7S1MID4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MID4_ALECA)

HSP 1 Score: 49.3 bits (116), Expect = 3.190e-5
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   10 VMEVVDWLSTQGDASYDFSVFLGGWFLGTPASELRRDNVVVFLAWAMYAKESADLSKSE 186
            V EV  W + +G        +L GWFLG+  SE+RR N+V F+AWA + +  A+L +SE
Sbjct:  135 VEEVKSWSAPEGPGRTPRE-WLEGWFLGSALSEIRRGNMVEFVAWAFWTRYEAELDESE 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183632.4940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVU2_ECTSI2.100e-1559.68AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A7S2CLR6_9STRA6.480e-842.59Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2RF55_9STRA2.330e-538.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1MID4_ALECA3.190e-542.37Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183632contigH-elongata_contig183632:531..716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue7.1e-12
Seed eggNOG ortholog2880.D7FVU2
EggNOG OGs28PIM@1,2QW6Q@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size186
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.7172532-UTR-H-elongata_contig183632:530..5421622930053.7172532-UTR-H-elongata_contig183632:530..542Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183632 531..542 +
1691679262.7270055-UTR-H-elongata_contig183632:530..5421691679262.7270055-UTR-H-elongata_contig183632:530..542Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig183632 531..542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.7307026-CDS-H-elongata_contig183632:542..7161622930053.7307026-CDS-H-elongata_contig183632:542..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183632 543..716 +
1691679262.7384486-CDS-H-elongata_contig183632:542..7161691679262.7384486-CDS-H-elongata_contig183632:542..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183632 543..716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183632.4940.1prot_H-elongata_contig183632.4940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183632 543..716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183632.4940.1

>prot_H-elongata_contig183632.4940.1 ID=prot_H-elongata_contig183632.4940.1|Name=mRNA_H-elongata_contig183632.4940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MEVVDWLSTQGDASYDFSVFLGGWFLGTPASELRRDNVVVFLAWAMYAKE
SADLSKSE
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mRNA from alignment at H-elongata_contig183632:531..716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183632.4940.1 ID=mRNA_H-elongata_contig183632.4940.1|Name=mRNA_H-elongata_contig183632.4940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig183632:531..716+ (Himanthalia elongata Himel1 dioecious)
GTGTCGAAGGTAATGGAAGTTGTGGACTGGCTGTCGACGCAGGGCGATGC
CTCGTACGACTTCTCGGTCTTCCTCGGAGGCTGGTTCCTTGGCACGCCCG
CCTCCGAGCTGCGACGGGACAATGTGGTTGTATTCCTGGCGTGGGCGATG
TATGCCAAGGAATCGGCGGACTTGTCCAAATCAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig183632:531..716+

>mRNA_H-elongata_contig183632.4940.1 ID=mRNA_H-elongata_contig183632.4940.1|Name=mRNA_H-elongata_contig183632.4940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig183632:531..716+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGTTGTGGACTGGCTGTCGACGCAGGGCGATGCCTCGTACGACTT
CTCGGTCTTCCTCGGAGGCTGGTTCCTTGGCACGCCCGCCTCCGAGCTGC
GACGGGACAATGTGGTTGTATTCCTGGCGTGGGCGATGTATGCCAAGGAA
TCGGCGGACTTGTCCAAATCAGAGATGGAAGTTGTGGACTGGCTGTCGAC
GCAGGGCGATGCCTCGTACGACTTCTCGGTCTTCCTCGGAGGCTGGTTCC
TTGGCACGCCCGCCTCCGAGCTGCGACGGGACAATGTGGTTGTATTCCTG
GCGTGGGCGATGTATGCCAAGGAATCGGCGGACTTGTCCAAATCAGAG
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