mRNA_H-elongata_contig18346.4934.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18346.4934.1
Unique NamemRNA_H-elongata_contig18346.4934.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: D7G6G8_ECTSI (Dynein 18 kDa light chain, flagellar outer arm n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6G8_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 7.880e-43
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLSTS 303
            DF SFLKIVA+QKS+RS   WSGDSGDLVDAF+ACGGNPDETGSAD  KI+KIVK DFGLDVDIE IIDTLDVDG G+L F+QFKEML+ S
Sbjct:   63 DFTSFLKIVASQKSVRS--IWSGDSGDLVDAFVACGGNPDETGSADVDKIVKIVKTDFGLDVDIEAIIDTLDVDGAGQLGFAQFKEMLTAS 151
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: A0A2P4YNF9_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNF9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.080e-21
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:    1 PDDSLTVPPSDFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLS 297
            P+++    P DF  FL+++ NQK    RA    D  D++DAF+ACGG PD++G      ++KI+K DFGL ++IE +I+ LDVDG+G ++F +FK +L+
Sbjct:   35 PEENSLQCPLDFAEFLQVIDNQKD---RAAMFEDDSDMIDAFVACGGKPDKSGFVRKETLVKIIKGDFGLTINIEEMINKLDVDGSGEIEFDEFKAILT 130
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: A0A7S2GY36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GY36_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.970e-20
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLS 297
            DF  FL ++ NQKS R+ +F   D  D++DAF+ACGG  D+TG      ++KI+K DFGL +DIE +I+ +D DG+G+++F +F  +LS
Sbjct:   63 DFAEFLLVIENQKS-RAESF--DDENDMIDAFVACGGKADKTGHVKRDTLVKIIKTDFGLTIDIEDLINKIDTDGSGKIEFDEFMTLLS 148
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: A0A835Z187_9STRA (EF hand-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z187_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.970e-20
Identity = 41/89 (46.07%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLS 297
            DF+ FLK++ NQK +R+ +F   D  D++DAF+ACGG  +++G      ++KI+K DFGL +DIE +I+ +DVDG+G ++F +FK +LS
Sbjct:   63 DFSEFLKVIENQK-MRAESF--DDETDMIDAFVACGGLANKSGHVKRDTLVKIIKQDFGLTIDIEDLINRIDVDGSGEIEFEEFKTLLS 148
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: A0A7S1XYK3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.090e-20
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLS 297
            DF  FLK++ NQK    RA    D  D++DAF+ACGG PD+ G+     ++KI+K DFGL +DIE +I+ +D DG+G ++F +F+ +LS
Sbjct:  110 DFAEFLKVIENQKD---RAENFDDETDMIDAFVACGGRPDKEGNVKRETLVKIIKQDFGLTIDIEELINKIDTDGSGEIEFEEFRTLLS 195
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: A0A6U3V7I8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3V7I8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.150e-20
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLST 300
            DF  FLK+V +QK    RA    D  D++DAF+ACGG PD +G      +IKI+K DFGL +DIE +I+ +D DG+G ++F +FK +LS+
Sbjct:   63 DFGEFLKVVESQKR---RAENFDDENDMIDAFVACGGMPDRSGHVKRETLIKIIKHDFGLMIDIEELINKIDTDGSGEIEFEEFKILLSS 149
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: A0A812ZLM1_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZLM1_SYMMI)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-19
Identity = 39/89 (43.82%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLS 297
            DF+ FLK++ NQK  R+ +F   D  D++DA++ACGG PD++G      +I+I+K DFGL ++IE +I+ +D DG+G ++F +FK +L+
Sbjct:   67 DFSEFLKVIENQKE-RAESF--DDESDMIDAYVACGGQPDKSGHVARDTLIRIIKQDFGLPINIEELINKVDTDGSGEIEFDEFKTLLT 152
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: D8LKX2_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.220e-19
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLS 297
            DF  FLK++ NQK+ R++ F   D  D++DAF+ACGG  D+TG      ++KI+K DFGL ++IE +I+ +D DG+G ++F +FK +LS
Sbjct:   91 DFPEFLKVIENQKT-RAQNF--DDETDMIDAFVACGGRMDKTGHVKRGALVKIIKVDFGLTINIEDLINKIDADGSGEIEFPEFKALLS 176
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: A0A7S4JWG6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JWG6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.570e-19
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLST 300
            DF  FLK+V  QK    RA    D  D++DAF+ACGG  D+ G      +IKI+K DFGL +DIE +I+ +D DG+G+++F +FK +LS+
Sbjct:   14 DFGEFLKVVEGQKQ---RAENVDDETDMIDAFVACGGQADKGGHVKRDTLIKIIKHDFGLTIDIEELINKIDTDGSGQIEFEEFKILLSS 100
[Close]
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Match: A0A812KW91_SYMMI (Calmodulin n=6 Tax=cellular organisms TaxID=131567 RepID=A0A812KW91_SYMMI)

HSP 1 Score: 85.1 bits (209), Expect = 6.380e-19
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   31 DFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPDETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLS 297
            DF  FLK++ NQK    RA    D  D++DAF+ACGG  D++G      +++I+K DFGL +DIE +I+ +D DG+G ++F +FK +LS
Sbjct:   63 DFAEFLKVIENQKE---RAENFDDESDMIDAFVACGGLQDKSGHVKRETLVRIIKHDFGLTIDIEELINKIDTDGSGEIEFEEFKTLLS 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18346.4934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6G8_ECTSI7.880e-4380.22Dynein 18 kDa light chain, flagellar outer arm n=2... [more]
A0A2P4YNF9_9STRA3.080e-2143.43EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
A0A7S2GY36_9STRA3.970e-2046.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z187_9STRA3.970e-2046.07EF hand-containing protein n=1 Tax=Tribonema minus... [more]
A0A7S1XYK3_9STRA6.090e-2046.07Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6U3V7I8_9STRA8.150e-2047.78Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A812ZLM1_SYMMI1.240e-1943.82Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]
D8LKX2_ECTSI2.220e-1946.07Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S4JWG6_9STRA2.570e-1946.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A812KW91_SYMMI6.380e-1944.94Calmodulin n=6 Tax=cellular organisms TaxID=131567... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18346contigH-elongata_contig18346:417..1146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.5e-33
Seed eggNOG ortholog2880.D7G6G8
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein 18 kDa light chain, flagellar outer arm
Ec32 orthologEc-05_006150.1
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.3874154-CDS-H-elongata_contig18346:416..5311622930053.3874154-CDS-H-elongata_contig18346:416..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18346 417..531 +
1691679262.5902832-CDS-H-elongata_contig18346:416..5311691679262.5902832-CDS-H-elongata_contig18346:416..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18346 417..531 +
1622930053.399813-CDS-H-elongata_contig18346:955..11461622930053.399813-CDS-H-elongata_contig18346:955..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18346 956..1146 +
1691679262.603435-CDS-H-elongata_contig18346:955..11461691679262.603435-CDS-H-elongata_contig18346:955..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18346 956..1146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18346.4934.1prot_H-elongata_contig18346.4934.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18346 417..1146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18346.4934.1

>prot_H-elongata_contig18346.4934.1 ID=prot_H-elongata_contig18346.4934.1|Name=mRNA_H-elongata_contig18346.4934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
PDDSLTVPPSDFNSFLKIVANQKSIRSRAFWSGDSGDLVDAFIACGGNPD
ETGSADASKIIKIVKADFGLDVDIEGIIDTLDVDGTGRLDFSQFKEMLST
S*
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mRNA from alignment at H-elongata_contig18346:417..1146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18346.4934.1 ID=mRNA_H-elongata_contig18346.4934.1|Name=mRNA_H-elongata_contig18346.4934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=730bp|location=Sequence derived from alignment at H-elongata_contig18346:417..1146+ (Himanthalia elongata Himel1 dioecious)
CCCGACGATTCTCTCACGGTGCCGCCTTCAGACTTTAACTCTTTCCTCAA
GATTGTAGCGAACCAAAAGAGCATTCGGAGTCGAGCCTTTTGGAGCGGTG
ATAGCGGGGACCTGGGTAAGGACCAGCGCAACGAGCGCATGATATGCGCT
CGCTGAGGGAGAGGCAAAATTACAAAACGAGTTTTTAGTTTACCAATAGA
ATTTACAGTGTTGCCAAAAATTGACACTTGAAGTTTTTGTCAATGTATTT
TGCTGTGTAGGGTTGGCGTTTCTCGTTGTGCCGAATCTGCGGGAATCACT
ATTACAAGGAGAGTATATTTTTGACGAAGTGGTTGAATCGGTTTGCCAAG
TTGCATATGTTCTAACGGCCTAGAGCAACGTTCACCCGCCCCGCGAACAG
GAATAGAGAGTACGCGCTGCACGTCTCACCATATGCTCAGAGGTATATTT
TGTTTTGTAGTGATCGTGCTACTCTGTTCTGCACATTTTTAGAGCTAATT
ATTGTCCTCATTCCCCCTCCCTGAATCTTTCAAACGTAGTTGACGCCTTC
ATAGCTTGCGGTGGAAACCCGGACGAGACGGGTTCGGCGGACGCGAGCAA
GATAATCAAGATCGTTAAGGCAGATTTTGGGCTCGACGTCGATATTGAGG
GCATCATCGACACACTCGATGTCGATGGAACCGGCCGGCTAGATTTCTCT
CAATTCAAGGAGATGCTGTCAACTTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig18346:417..1146+

>mRNA_H-elongata_contig18346.4934.1 ID=mRNA_H-elongata_contig18346.4934.1|Name=mRNA_H-elongata_contig18346.4934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig18346:417..1146+ (Himanthalia elongata Himel1 dioecious)
CCCGACGATTCTCTCACGGTGCCGCCTTCAGACTTTAACTCTTTCCTCAA
GATTGTAGCGAACCAAAAGAGCATTCGGAGTCGAGCCTTTTGGAGCGGTG
ATAGCGGGGACCTGGCCCGACGATTCTCTCACGGTGCCGCCTTCAGACTT
TAACTCTTTCCTCAAGATTGTAGCGAACCAAAAGAGCATTCGGAGTCGAG
CCTTTTGGAGCGGTGATAGCGGGGACCTGGTTGACGCCTTCATAGCTTGC
GGTGGAAACCCGGACGAGACGGGTTCGGCGGACGCGAGCAAGATAATCAA
GATCGTTAAGGCAGATTTTGGGCTCGACGTCGATATTGAGGGCATCATCG
ACACACTCGATGTCGATGGAACCGGCCGGCTAGATTTCTCTCAATTCAAG
GAGATGCTGTCAACTTCGTGATTGACGCCTTCATAGCTTGCGGTGGAAAC
CCGGACGAGACGGGTTCGGCGGACGCGAGCAAGATAATCAAGATCGTTAA
GGCAGATTTTGGGCTCGACGTCGATATTGAGGGCATCATCGACACACTCG
ATGTCGATGGAACCGGCCGGCTAGATTTCTCTCAATTCAAGGAGATGCTG
TCAACTTCGTGA
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